Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015500

Physical Location & Seq

Genomic Coordinates Reverse (-)

54807966 .. 54808763

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G027320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGCCAAAGAAGAAGAGGAGCAACGACGACGACGACGAAGACGAATTGGAATCCCTCTGCAACCGCTACCCCTCAGCCCCGCAGGCCCAAAAGCCCACCACCAAGCCCACCGGGTCGGGTTCGGGTTCGGGTTCCGGAACCCTAGCCCCGTCGAAATCCACCCTCTACGTCTCCAACCTCGACTACTCCCTCACCAACTCCGACCTCCACACCCTCTTCTCCCGCTTCGGCAAGATCGCCCGCGTCACCTTCGTCACGCGCGACGACGCCTTAAAGTCGGCGCGTGAGATGCACGGGAAGATTCTGAACGGCCGGAAGCTCTCGGCGTCGATCGCGGAGGATAACGGACGCGCCGCCGAGTTTATAAAGAAGAGGGAGTACAAAGACAAGAGCCGGTGCTACGAGTGCGGCGCCGAGGGGCACTTGAGTTATGAGTGCCCCAAGAACCAGCTGGGGCCGAGGGAGCGGCCGCCGCAGAAGAAAGCAAGGAGAGGCGGCGGCGGCGGAGGAGGAGGAGGTGGAGGTAGAGGGGGTGAGGCGCGTGGGGAGGACGAGGGGGAGTGGGAGAGTGGGGGCGAGAGGTTTGAGGATGATAATTGGGCGTCTGTGGTGGATGGTGGGGCCGGGCAGAGGTTGCTGTTGAGTGAGGAGATGGAGGAGGAGGAGGTGGAGAAGAAGAGGAAGAAGAAGATTAAGAAAGCTGGGTATTTTAGTGATGAGAGTGATCATGATGATGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051302 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

248

Amino Acids

27.1

Weight (kDa)

5.78

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	56 - 108	1.4e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10400
fragaria_vesca	FvH4_7g18730 FvH4_7g18730
malus_domestica	MD01G1102800.v1.1
prunus_persica	Prupe.2G208400_v2.0.a1
pyrus_communis	pycom01g12930 pycom07g16330
rosa_chinensis	RchiOBHm_Chr1g0362501
rosa_laevigata	RLG00000027641
rosa_roxburghii	Rroxscaffold_4G00294090
rosa_rugosa	Rorug01G0298500
rosa_samantha	Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200
rosa_wichuraiana	Rw1G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccB1I	GGYRCC	2 cut(s)	4, 413
AccBSI	CCGCTC	1 cut(s)	469
AccII	CGCG	7 cut(s)	246, 262, 264, 286, 338, 354, 544
AccIII	TCCGGA	1 cut(s)	137
AcoI	YGGCCR	2 cut(s)	313, 470
AcyI	GRCGYC	5 cut(s)	5, 270, 329, 414, 605
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	633
AluBI	AGCT	3 cut(s)	322, 454, 704
AluI	AGCT	3 cut(s)	322, 454, 704
Alw26I	GTCTC	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	5 cut(s)	87, 313, 458, 470, 624
AspLEI	GCGC	6 cut(s)	7, 264, 286, 356, 416, 544
AspS9I	GGNCC	3 cut(s)	88, 458, 624
AsuC2I	CCSGG	2 cut(s)	115, 628
AsuHPI	GGTGA	3 cut(s)	187, 241, 548
BaeGI	GKGCMC	2 cut(s)	426, 443
BanI	GGYRCC	2 cut(s)	4, 413
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BbsI	GAAGAC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	611, 649
BceAI	ACGGC	1 cut(s)	328
BclI	TGATCA	1 cut(s)	727
BcnI	CCSGG	2 cut(s)	115, 628
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	146
BfoI	RGCGCY	2 cut(s)	8, 417
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	8 cut(s)	357, 412, 470, 473, 476, 499, 502, 505
BlsI	GCNGC	8 cut(s)	358, 413, 471, 474, 477, 500, 503, 506
Bme1390I	CCNGG	2 cut(s)	115, 628
BmgT120I	GGNCC	3 cut(s)	88, 458, 624
BmiI	GGNNCC	6 cut(s)	6, 136, 142, 415, 459, 625
BmrFI	CCNGG	2 cut(s)	115, 628
BmsI	GCATC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	448
BpuMI	CCSGG	2 cut(s)	115, 628
BsaHI	GRCGYC	5 cut(s)	5, 270, 329, 414, 605
BsaJI	CCNNGG	2 cut(s)	417, 461
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	633
Bse118I	RCCGGY	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	417, 461
BseGI	GGATG	2 cut(s)	598, 622
BseLI	CCNNNNNNNGG	1 cut(s)	633
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	8 cut(s)	34, 525, 528, 531, 665, 674, 677, 680
BseSI	GKGCMC	2 cut(s)	426, 443
BseX3I	CGGCCG	2 cut(s)	313, 470
BseYI	CCCAGC	2 cut(s)	454, 704
Bsh1236I	CGCG	7 cut(s)	246, 262, 264, 286, 338, 354, 544
Bsh1285I	CGRYCG	3 cut(s)	316, 336, 473
BshFI	GGCC	5 cut(s)	89, 315, 460, 472, 626
BshNI	GGYRCC	2 cut(s)	4, 413
BsiEI	CGRYCG	3 cut(s)	316, 336, 473
BsiSI	CCGG	5 cut(s)	114, 138, 316, 397, 627
BslI	CCNNNNNNNGG	1 cut(s)	633
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	5 cut(s)	89, 315, 460, 472, 626
Bsp1286I	GDGCHC	2 cut(s)	426, 443
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	237, 333, 727
BspANI	GGCC	5 cut(s)	89, 315, 460, 472, 626
BspCNI	CTCAG	1 cut(s)	89
BspEI	TCCGGA	1 cut(s)	137
BspFNI	CGCG	7 cut(s)	246, 262, 264, 286, 338, 354, 544
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	6 cut(s)	6, 136, 142, 415, 459, 625
BspT107I	GGYRCC	2 cut(s)	4, 413
BsrBI	CCGCTC	1 cut(s)	469
BsrFI	RCCGGY	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	417, 461
BssMI	GATC	3 cut(s)	237, 333, 727
BssNI	GRCGYC	5 cut(s)	5, 270, 329, 414, 605
Bst6I	CTCTTC	4 cut(s)	11, 224, 368, 674
BstACI	GRCGYC	5 cut(s)	5, 270, 329, 414, 605
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstC8I	GCNNGC	2 cut(s)	87, 244
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	598, 622
BstFNI	CGCG	7 cut(s)	246, 262, 264, 286, 338, 354, 544
BstH2I	RGCGCY	2 cut(s)	8, 417
BstHHI	GCGC	6 cut(s)	7, 264, 286, 356, 416, 544
BstKTI	GATC	3 cut(s)	240, 336, 730
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	3 cut(s)	237, 333, 727
BstMCI	CGRYCG	3 cut(s)	316, 336, 473
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 292, 335, 408, 466, 475, 504, 637
BstSCI	CCNGG	2 cut(s)	113, 626
BstSLI	GKGCMC	2 cut(s)	426, 443
BstUI	CGCG	7 cut(s)	246, 262, 264, 286, 338, 354, 544
BstV2I	GAAGAC	1 cut(s)	48
BstZI	CGGCCG	2 cut(s)	313, 470
BsuRI	GGCC	5 cut(s)	89, 315, 460, 472, 626
BtsCI	GGATG	2 cut(s)	598, 622
Cac8I	GCNNGC	2 cut(s)	87, 244
CciI	TCATGA	1 cut(s)	730
CciNI	GCGGCCGC	1 cut(s)	470
CfoI	GCGC	6 cut(s)	7, 264, 286, 356, 416, 544
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	88, 458, 624
CseI	GACGC	5 cut(s)	235, 278, 318, 360, 594
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	1 cut(s)	731
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	76
DinI	GGCGCC	2 cut(s)	6, 415
DpnI	GATC	3 cut(s)	239, 335, 729
DpnII	GATC	3 cut(s)	237, 333, 727
EaeI	YGGCCR	2 cut(s)	313, 470
EagI	CGGCCG	2 cut(s)	313, 470
Eam1104I	CTCTTC	4 cut(s)	11, 224, 368, 674
EarI	CTCTTC	4 cut(s)	11, 224, 368, 674
EciI	GGCGGA	1 cut(s)	522
EclXI	CGGCCG	2 cut(s)	313, 470
Eco52I	CGGCCG	2 cut(s)	313, 470
EgeI	GGCGCC	2 cut(s)	6, 415
EheI	GGCGCC	2 cut(s)	6, 415
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	734
FaiI	YATR	3 cut(s)	368, 435, 732
FatI	CATG	1 cut(s)	730
FauI	CCCGC	3 cut(s)	90, 233, 251
FbaI	TGATCA	1 cut(s)	727
Fnu4HI	GCNGC	8 cut(s)	357, 412, 470, 473, 476, 499, 502, 505
FokI	GGATG	2 cut(s)	605, 629
Fsp4HI	GCNGC	8 cut(s)	357, 412, 470, 473, 476, 499, 502, 505
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	6 cut(s)	6, 263, 285, 355, 415, 543
GluI	GCNGC	8 cut(s)	357, 412, 470, 473, 476, 499, 502, 505
GsaI	CCCAGC	2 cut(s)	458, 708
HaeII	RGCGCY	2 cut(s)	8, 417
HaeIII	GGCC	5 cut(s)	89, 315, 460, 472, 626
HapII	CCGG	5 cut(s)	114, 138, 316, 397, 627
HgaI	GACGC	5 cut(s)	235, 278, 318, 360, 594
HhaI	GCGC	6 cut(s)	7, 264, 286, 356, 416, 544
Hin1I	GRCGYC	5 cut(s)	5, 270, 329, 414, 605
Hin1II	CATG	1 cut(s)	734
Hin6I	GCGC	6 cut(s)	5, 262, 284, 354, 414, 542
HinP1I	GCGC	6 cut(s)	5, 262, 284, 354, 414, 542
HinfI	GANTC	2 cut(s)	53, 304
HpaII	CCGG	5 cut(s)	114, 138, 316, 397, 627
HphI	GGTGA	3 cut(s)	187, 241, 548
Hpy188I	TCNGA	2 cut(s)	205, 309
Hpy188III	TCNNGA	2 cut(s)	138, 731
Hpy99I	CGWCG	8 cut(s)	32, 35, 38, 41, 157, 269, 272, 334
HpyAV	CCTTC	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	63, 295
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 292, 335, 408, 466, 475, 504, 637
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	5 cut(s)	5, 270, 329, 414, 605
Hsp92II	CATG	1 cut(s)	734
HspAI	GCGC	6 cut(s)	5, 262, 284, 354, 414, 542
KasI	GGCGCC	2 cut(s)	4, 413
Kpn2I	TCCGGA	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	3 cut(s)	237, 333, 727
LmnI	GCTCC	2 cut(s)	21, 466
LpnPI	CCDG	9 cut(s)	71, 127, 151, 329, 410, 440, 464, 640, 690
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	247, 256
MalI	GATC	3 cut(s)	239, 335, 729
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	3 cut(s)	237, 333, 727
MhlI	GDGCHC	2 cut(s)	426, 443
MluCI	AATT	2 cut(s)	47, 598
Mly113I	GGCGCC	2 cut(s)	5, 414
MmeI	TCCRAC	2 cut(s)	201, 228
MroI	TCCGGA	1 cut(s)	137
MseI	TTAA	2 cut(s)	275, 696
MslI	CAYNNNNRTG	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	5 cut(s)	114, 138, 316, 397, 627
MspR9I	CCNGG	2 cut(s)	115, 628
MvnI	CGCG	7 cut(s)	246, 262, 264, 286, 338, 354, 544
MwoI	GCNNNNNNNGC	8 cut(s)	86, 292, 335, 408, 466, 475, 504, 637
NarI	GGCGCC	2 cut(s)	5, 414
NciI	CCSGG	2 cut(s)	115, 628
NdeII	GATC	3 cut(s)	237, 333, 727
NlaIII	CATG	1 cut(s)	734
NlaIV	GGNNCC	6 cut(s)	6, 136, 142, 415, 459, 625
NmeAIII	GCCGAG	4 cut(s)	305, 385, 442, 486
NmuCI	GTSAC	2 cut(s)	247, 256
NotI	GCGGCCGC	1 cut(s)	470
PagI	TCATGA	1 cut(s)	730
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 36, 42, 261
PfeI	GAWTC	2 cut(s)	53, 304
PkrI	GCNGC	8 cut(s)	358, 413, 471, 474, 477, 500, 503, 506
Ple19I	CGATCG	1 cut(s)	336
PluTI	GGCGCC	2 cut(s)	8, 417
PsiI	TTATAA	1 cut(s)	368
PspFI	CCCAGC	2 cut(s)	454, 704
PspN4I	GGNNCC	6 cut(s)	6, 136, 142, 415, 459, 625
PspPI	GGNCC	3 cut(s)	88, 458, 624
PvuI	CGATCG	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	275, 696
SatI	GCNGC	8 cut(s)	357, 412, 470, 473, 476, 499, 502, 505
Sau3AI	GATC	3 cut(s)	237, 333, 727
Sau96I	GGNCC	3 cut(s)	88, 458, 624
ScrFI	CCNGG	2 cut(s)	115, 628
SduI	GDGCHC	2 cut(s)	426, 443
SfaNI	GCATC	1 cut(s)	282
SfoI	GGCGCC	2 cut(s)	6, 415
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	2 cut(s)	47, 598
SspDI	GGCGCC	2 cut(s)	4, 413
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	113, 626
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	155, 183, 332
TasI	AATT	2 cut(s)	47, 598
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	8 cut(s)	359, 414, 472, 475, 478, 501, 504, 507
TfiI	GAWTC	2 cut(s)	53, 304
Tru1I	TTAA	2 cut(s)	275, 696
Tru9I	TTAA	2 cut(s)	275, 696
TseFI	GTSAC	2 cut(s)	247, 256
Tsp45I	GTSAC	2 cut(s)	247, 256
TspGWI	ACGGA	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.