Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015500

Physical Location & Seq

Genomic Coordinates Reverse (-)

21493860 .. 21498329

Gene Structure 4470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1102800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGCCCAAATGTAACGAGATTCCACAGTTCAAGGGCGTTGGTAAAGGATTTCACAAAAGAAAAAACAAAAGGTCTGACTGAAAATGGGGGAGAGTTCAGATCGGAGAACTGTGGGAGAGAAAGGAGAAGAAACAGCAGCGACGAAGACGAAGACGACACCTTCTACTACCGCTACGCCTCCTCCGCCCCACAAACCCAAAAACCCAAAAACCAAAAACCGGTAAGTACGTCCGGCTCAGGAAGCCTAGCACCATCGAAATCGACCCTCTACGTCTCCAACCTCGACTACTCCCTCACCAATTCGGACCTCCACACCCTCTTCTCCCACTTCGGCAAGATCGCCAGAGTCACCGTCCTCAAGAATCGCGAGACCCGCCAGAGCCGCGGCGTCGCCTTCGTCCAATTCGTGTCCCGCACCGATGCTTCCACGGCGGCGAGTGAGATGCACGGGAAGATACTTAACGGGAGAAAGTTATCCGCCTCCATCGCCGCTGACAATGGCCGGGCCACCGAGTTCATTCGGAAGAGGGAGTACAAGGACAAGAGCCGATGCTATGAGTGCGGCGAGGAGGGGCACTTGTCGTACGAGTGCCCGAAGAACCAGCTGGGGCCCAGGGAGCGGCCGCCGCCGAAGCGGGTGAAGAGAGGTGGCGGTGGTAGCGGTAATGGCGGCAGGGCGGCACCTGTGGACGAGGAGGAGTATGATAGTGGTGGTGAGAAGTTTGAGGATGATAATTGGGCGTCGGTGGTGGATGATGGGGCTGATCTGAGGTTGCGGTTGGCGGCGGAGGAGGCGGAGGAGAAGAAGAGTAAAAAGGTTGCAAAGAAACCTGGTTACTTTAGTGATGAGAGTGACAACGATGATGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051302 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

292

Amino Acids

32.32

Weight (kDa)

7.64

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_5	PF13893	66 - 164	2.4e-07	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	90 - 159	1.4e-20	RNA recognition motif
zf-CCHC	PF00098	184 - 200	5.9e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10400
fragaria_vesca	FvH4_7g18730 FvH4_7g18730
malus_domestica	MD01G1102800.v1.1
prunus_persica	Prupe.2G208400_v2.0.a1
pyrus_communis	pycom01g12930 pycom07g16330
rosa_chinensis	RchiOBHm_Chr1g0362501
rosa_laevigata	RLG00000027641
rosa_roxburghii	Rroxscaffold_4G00294090
rosa_rugosa	Rorug01G0298500
rosa_samantha	Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200
rosa_wichuraiana	Rw1G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	682
AccBSI	CCGCTC	1 cut(s)	622
AccII	CGCG	2 cut(s)	369, 387
AcoI	YGGCCR	2 cut(s)	502, 623
AcyI	GRCGYC	2 cut(s)	390, 743
AfaI	GTAC	3 cut(s)	229, 536, 587
AfiI	CCNNNNNNNGG	2 cut(s)	220, 621
AgeI	ACCGGT	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	33
AjnI	CCWGG	2 cut(s)	614, 832
AluBI	AGCT	1 cut(s)	607
AluI	AGCT	1 cut(s)	607
Alw26I	GTCTC	2 cut(s)	280, 365
AoxI	GGCC	5 cut(s)	4, 502, 507, 611, 623
ApaI	GGGCCC	2 cut(s)	8, 615
ApeKI	GCWGC	1 cut(s)	138
AsiGI	ACCGGT	1 cut(s)	220
AspS9I	GGNCC	6 cut(s)	4, 5, 307, 507, 611, 612
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	4 cut(s)	289, 343, 652, 728
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	4 cut(s)	8, 579, 596, 615
BanI	GGYRCC	1 cut(s)	682
BanII	GRGCYC	2 cut(s)	8, 615
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
BbsI	GAAGAC	2 cut(s)	153, 159
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	3 cut(s)	262, 494, 752
BceAI	ACGGC	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciT130I	CCWGG	2 cut(s)	616, 834
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	2 cut(s)	280, 365
BfaI	CTAG	1 cut(s)	248
Bme1390I	CCNGG	3 cut(s)	506, 616, 834
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	6 cut(s)	4, 5, 307, 507, 611, 612
BmiI	GGNNCC	4 cut(s)	6, 612, 613, 684
BmrFI	CCNGG	3 cut(s)	506, 616, 834
BmsI	GCATC	3 cut(s)	412, 435, 542
BpiI	GAAGAC	2 cut(s)	153, 159
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	506
BsaHI	GRCGYC	2 cut(s)	390, 743
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	385, 429, 614, 615
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 621
Bse118I	RCCGGY	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	616, 834
BseDI	CCNNGG	4 cut(s)	385, 429, 614, 615
BseGI	GGATG	2 cut(s)	736, 760
BseLI	CCNNNNNNNGG	2 cut(s)	220, 621
BseMII	CTCAG	2 cut(s)	252, 761
BseRI	GAGGAG	6 cut(s)	172, 584, 710, 713, 806, 815
BseSI	GKGCMC	4 cut(s)	8, 579, 596, 615
BseX3I	CGGCCG	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	150
BseYI	CCCAGC	1 cut(s)	607
Bsh1236I	CGCG	2 cut(s)	369, 387
Bsh1285I	CGRYCG	1 cut(s)	626
BshFI	GGCC	5 cut(s)	6, 504, 509, 613, 625
BshNI	GGYRCC	1 cut(s)	682
BshTI	ACCGGT	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	626
BsiSI	CCGG	3 cut(s)	221, 234, 505
BsiWI	CGTACG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	220, 621
BsmAI	GTCTC	2 cut(s)	280, 365
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	5 cut(s)	6, 504, 509, 613, 625
Bso31I	GGTCTC	1 cut(s)	365
Bsp120I	GGGCCC	2 cut(s)	4, 611
Bsp1286I	GDGCHC	4 cut(s)	8, 579, 596, 615
Bsp143I	GATC	3 cut(s)	101, 339, 766
Bsp68I	TCGCGA	1 cut(s)	369
BspANI	GGCC	5 cut(s)	6, 504, 509, 613, 625
BspCNI	CTCAG	2 cut(s)	251, 762
BspFNI	CGCG	2 cut(s)	369, 387
BspLI	GGNNCC	4 cut(s)	6, 612, 613, 684
BspT107I	GGYRCC	1 cut(s)	682
BspTNI	GGTCTC	1 cut(s)	365
BsrBI	CCGCTC	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	4 cut(s)	385, 429, 614, 615
BssMI	GATC	3 cut(s)	101, 339, 766
BssNI	GRCGYC	2 cut(s)	390, 743
Bst2UI	CCWGG	2 cut(s)	616, 834
Bst4CI	ACNGT	3 cut(s)	29, 113, 355
Bst6I	CTCTTC	4 cut(s)	326, 521, 638, 803
BstACI	GRCGYC	2 cut(s)	390, 743
BstDEI	CTNAG	2 cut(s)	238, 770
BstDSI	CCRYGG	2 cut(s)	385, 429
BstF5I	GGATG	2 cut(s)	736, 760
BstFNI	CGCG	2 cut(s)	369, 387
BstKTI	GATC	3 cut(s)	104, 342, 769
BstMAI	GTCTC	2 cut(s)	280, 365
BstMBI	GATC	3 cut(s)	101, 339, 766
BstMCI	CGRYCG	1 cut(s)	626
BstNI	CCWGG	2 cut(s)	616, 834
BstSCI	CCNGG	3 cut(s)	504, 614, 832
BstSLI	GKGCMC	4 cut(s)	8, 579, 596, 615
BstUI	CGCG	2 cut(s)	369, 387
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	2 cut(s)	153, 159
BstZI	CGGCCG	1 cut(s)	623
BsuRI	GGCC	5 cut(s)	6, 504, 509, 613, 625
BtgI	CCRYGG	2 cut(s)	385, 429
BtgZI	GCGATG	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	736, 760
BtuMI	TCGCGA	1 cut(s)	369
CciNI	GCGGCCGC	1 cut(s)	623
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	6 cut(s)	4, 5, 307, 507, 611, 612
Cfr42I	CCGCGG	1 cut(s)	388
CseI	GACGC	2 cut(s)	379, 732
CsiI	ACCWGGT	1 cut(s)	832
Csp6I	GTAC	3 cut(s)	228, 535, 586
CspAI	ACCGGT	1 cut(s)	220
CviQI	GTAC	3 cut(s)	228, 535, 586
DdeI	CTNAG	2 cut(s)	238, 770
DpnI	GATC	3 cut(s)	103, 341, 768
DpnII	GATC	3 cut(s)	101, 339, 766
EaeI	YGGCCR	2 cut(s)	502, 623
EagI	CGGCCG	1 cut(s)	623
Eam1104I	CTCTTC	4 cut(s)	326, 521, 638, 803
EarI	CTCTTC	4 cut(s)	326, 521, 638, 803
EciI	GGCGGA	4 cut(s)	175, 469, 803, 812
EclXI	CGGCCG	1 cut(s)	623
Eco24I	GRGCYC	2 cut(s)	8, 615
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	307
Eco52I	CGGCCG	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	614, 832
EcoT38I	GRGCYC	2 cut(s)	8, 615
Esp3I	CGTCTC	1 cut(s)	280
FaiI	YATR	2 cut(s)	558, 705
FaqI	GGGAC	1 cut(s)	397
FauI	CCCGC	3 cut(s)	383, 422, 630
FokI	GGATG	2 cut(s)	743, 767
FriOI	GRGCYC	2 cut(s)	8, 615
FspBI	CTAG	1 cut(s)	248
GsaI	CCCAGC	1 cut(s)	611
HaeIII	GGCC	5 cut(s)	6, 504, 509, 613, 625
HapII	CCGG	3 cut(s)	221, 234, 505
HgaI	GACGC	2 cut(s)	379, 732
Hin1I	GRCGYC	2 cut(s)	390, 743
HinfI	GANTC	3 cut(s)	21, 348, 364
HpaII	CCGG	3 cut(s)	221, 234, 505
HphI	GGTGA	4 cut(s)	289, 343, 652, 728
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	6 cut(s)	78, 101, 106, 307, 525, 771
Hpy188III	TCNNGA	3 cut(s)	240, 361, 368
Hpy8I	GTNNAC	1 cut(s)	691
Hpy99I	CGWCG	3 cut(s)	146, 395, 748
HpyAV	CCTTC	2 cut(s)	172, 406
HpyCH4III	ACNGT	3 cut(s)	29, 113, 355
HpyCH4IV	ACGT	2 cut(s)	230, 273
HpyCH4V	TGCA	2 cut(s)	448, 824
HpyF3I	CTNAG	2 cut(s)	238, 770
HpySE526I	ACGT	2 cut(s)	230, 273
Hsp92I	GRCGYC	2 cut(s)	390, 743
KspI	CCGCGG	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	101, 339, 766
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	3 cut(s)	412, 435, 542
MabI	ACCWGGT	1 cut(s)	832
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	230, 273
MaeIII	GTNAC	4 cut(s)	13, 349, 836, 854
MalI	GATC	3 cut(s)	103, 341, 768
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	3 cut(s)	101, 339, 766
MhlI	GDGCHC	4 cut(s)	8, 579, 596, 615
MluCI	AATT	3 cut(s)	301, 404, 736
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	303
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	3 cut(s)	387, 494, 607
MspI	CCGG	3 cut(s)	221, 234, 505
MspR9I	CCNGG	3 cut(s)	506, 616, 834
MvaI	CCWGG	2 cut(s)	616, 834
MvnI	CGCG	2 cut(s)	369, 387
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	3 cut(s)	101, 339, 766
NlaIV	GGNNCC	4 cut(s)	6, 612, 613, 684
NmuCI	GTSAC	2 cut(s)	349, 854
NotI	GCGGCCGC	1 cut(s)	623
NruI	TCGCGA	1 cut(s)	369
PasI	CCCWGGG	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	21, 364
Pfl23II	CGTACG	1 cut(s)	585
PinAI	ACCGGT	1 cut(s)	220
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	614, 832
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	2 cut(s)	614, 832
PspLI	CGTACG	1 cut(s)	585
PspN4I	GGNNCC	4 cut(s)	6, 612, 613, 684
PspOMI	GGGCCC	2 cut(s)	4, 611
PspPI	GGNCC	6 cut(s)	4, 5, 307, 507, 611, 612
PvuII	CAGCTG	1 cut(s)	607
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	3 cut(s)	229, 536, 587
RsaNI	GTAC	3 cut(s)	228, 535, 586
SacII	CCGCGG	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	462
Sau3AI	GATC	3 cut(s)	101, 339, 766
Sau96I	GGNCC	6 cut(s)	4, 5, 307, 507, 611, 612
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	3 cut(s)	506, 616, 834
SduI	GDGCHC	4 cut(s)	8, 579, 596, 615
SexAI	ACCWGGT	1 cut(s)	832
SfaNI	GCATC	3 cut(s)	412, 435, 542
Sfr303I	CCGCGG	1 cut(s)	388
SgrBI	CCGCGG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	301, 404, 736
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	3 cut(s)	504, 614, 832
TaaI	ACNGT	3 cut(s)	29, 113, 355
TaiI	ACGT	2 cut(s)	233, 276
TaqI	TCGA	3 cut(s)	257, 263, 285
TasI	AATT	3 cut(s)	301, 404, 736
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	2 cut(s)	21, 364
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	349, 854
TseI	GCWGC	1 cut(s)	138
Tsp45I	GTSAC	2 cut(s)	349, 854
TspDTI	ATGAA	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	307
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.