Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015500

Physical Location & Seq

Genomic Coordinates Reverse (-)

24164238 .. 24166137

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTGGAAAAGAAGAAGAAGAAGAACAGCAGCGACGAAGACGAGGACGAAACCTTCTATTACCGATACACCTCAGCCCCGGAGACTCGAAAACCCGCAACCAAGCAGAGCGGGTCGGGCTCAGGAACCCTAGCTCCATCAAAATCCACCCTTTACGTCTCAAACCTCGACTATTCTCTCACCAACTCGGACCTCCACACCCTCTTCTCCCACTTCGGCAAGATCGCCCGAGTCACGGTCCTCAAAAACCGCGAGACCCGCCAGAGCCGCGGCGTCGCCTTCGTCCAGTTCGTCTCGCGCACCGACGCGGTCTCGGCGGCGGGTGAGATGCACGGGAAGATTCTCAACGGCCGGAAGCTCTCCGCCTCCATCGCCTCCGACAACGGCCGAGCCGCTGAGTTCATTAAGAAGAGGGAGTACAAGGACAAGAGCCGGTGCTACGAGTGCGGTGAAGAAGGGCATTTGTCGTACGAGTGTCCGAAGAACCAGCTGGGACCCAGGGAGCGGCCGCCGCCGAAGCGAGTAAGGAGAGGTGGCGGCGGTGGTGGTGGAAGTGCGGCGGCGCGTGTGGAAGAGGCCGAGGGGGACAGTGGAGGTGAGAGGTTTGAGGATGATAATTGGGCGTCGGTGGTGGATAGTGGAGCCGACCAGAGGTTGCTGGTGGGGGAGGAGATGGAGGAGAAGAAGAGGAAGAAGGGTGTGAAGAAATCTAGTTACTTTAGTGATGAGAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051302 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

246

Amino Acids

27.04

Weight (kDa)

8.93

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10400
fragaria_vesca	FvH4_7g18730 FvH4_7g18730
malus_domestica	MD01G1102800.v1.1
prunus_persica	Prupe.2G208400_v2.0.a1
pyrus_communis	pycom01g12930 pycom07g16330
rosa_chinensis	RchiOBHm_Chr1g0362501
rosa_laevigata	RLG00000027641
rosa_roxburghii	Rroxscaffold_4G00294090
rosa_rugosa	Rorug01G0298500
rosa_samantha	Rh1AG307900 Rh1BG271000 Rh1CG288700 Rh1DG301200
rosa_wichuraiana	Rw1G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	111, 505
AccII	CGCG	5 cut(s)	252, 270, 298, 308, 565
AcoI	YGGCCR	3 cut(s)	349, 385, 506
AcyI	GRCGYC	2 cut(s)	273, 623
AfaI	GTAC	2 cut(s)	419, 470
AfiI	CCNNNNNNNGG	3 cut(s)	235, 504, 651
AjnI	CCWGG	1 cut(s)	497
AloI	GAACNNNNNNTCC	2 cut(s)	118, 150
AluBI	AGCT	3 cut(s)	134, 358, 490
AluI	AGCT	3 cut(s)	134, 358, 490
Alw26I	GTCTC	5 cut(s)	77, 163, 248, 298, 316
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	4 cut(s)	349, 385, 506, 576
ApeKI	GCWGC	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	300, 565
AspS9I	GGNCC	3 cut(s)	190, 238, 494
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	4 cut(s)	172, 335, 461, 608
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	3 cut(s)	190, 238, 494
BanII	GRGCYC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	401, 433
BbsI	GAAGAC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	3 cut(s)	145, 377, 667
BceAI	ACGGC	2 cut(s)	364, 400
BciT130I	CCWGG	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	5 cut(s)	77, 163, 248, 298, 316
BfaI	CTAG	2 cut(s)	131, 711
Bme1390I	CCNGG	2 cut(s)	80, 499
Bme18I	GGWCC	3 cut(s)	190, 238, 494
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	3 cut(s)	190, 238, 494
BmiI	GGNNCC	4 cut(s)	127, 495, 496, 643
BmrFI	CCNGG	2 cut(s)	80, 499
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	45
Bpu10I	CCTNAGC	2 cut(s)	73, 121
BpuMI	CCSGG	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	273, 623
BsaI	GGTCTC	2 cut(s)	248, 316
BsaJI	CCNNGG	5 cut(s)	78, 268, 497, 498, 579
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 504, 651
Bse118I	RCCGGY	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	499
BseDI	CCNNGG	5 cut(s)	78, 268, 497, 498, 579
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	3 cut(s)	235, 504, 651
BseMII	CTCAG	3 cut(s)	87, 135, 387
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	2 cut(s)	683, 692
BseX3I	CGGCCG	3 cut(s)	349, 385, 506
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	490
Bsh1236I	CGCG	5 cut(s)	252, 270, 298, 308, 565
Bsh1285I	CGRYCG	3 cut(s)	352, 388, 509
BshFI	GGCC	4 cut(s)	351, 387, 508, 578
BsiEI	CGRYCG	3 cut(s)	352, 388, 509
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	80, 352, 433
BsiWI	CGTACG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	507, 599
BslI	CCNNNNNNNGG	3 cut(s)	235, 504, 651
BsmAI	GTCTC	5 cut(s)	77, 163, 248, 298, 316
BsmBI	CGTCTC	2 cut(s)	163, 298
BsmFI	GGGAC	2 cut(s)	507, 599
BsnI	GGCC	4 cut(s)	351, 387, 508, 578
Bso31I	GGTCTC	2 cut(s)	248, 316
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	222
BspANI	GGCC	4 cut(s)	351, 387, 508, 578
BspCNI	CTCAG	3 cut(s)	86, 134, 388
BspFNI	CGCG	5 cut(s)	252, 270, 298, 308, 565
BspLI	GGNNCC	4 cut(s)	127, 495, 496, 643
BspTNI	GGTCTC	2 cut(s)	248, 316
BsrBI	CCGCTC	2 cut(s)	111, 505
BsrFI	RCCGGY	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	432
BssECI	CCNNGG	5 cut(s)	78, 268, 497, 498, 579
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	2 cut(s)	273, 623
Bst2UI	CCWGG	1 cut(s)	499
Bst4CI	ACNGT	2 cut(s)	238, 590
Bst6I	CTCTTC	4 cut(s)	209, 404, 567, 680
BstACI	GRCGYC	2 cut(s)	273, 623
BstDEI	CTNAG	3 cut(s)	73, 121, 396
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	5 cut(s)	252, 270, 298, 308, 565
BstHHI	GCGC	2 cut(s)	300, 565
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	5 cut(s)	77, 163, 248, 298, 316
BstMBI	GATC	1 cut(s)	222
BstMCI	CGRYCG	3 cut(s)	352, 388, 509
BstMWI	GCNNNNNNNGC	8 cut(s)	117, 258, 267, 314, 371, 444, 511, 517
BstNI	CCWGG	1 cut(s)	499
BstSCI	CCNGG	2 cut(s)	78, 497
BstUI	CGCG	5 cut(s)	252, 270, 298, 308, 565
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	45
BstZI	CGGCCG	3 cut(s)	349, 385, 506
BsuRI	GGCC	4 cut(s)	351, 387, 508, 578
BtgI	CCRYGG	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	595
CciNI	GCGGCCGC	1 cut(s)	506
CfoI	GCGC	2 cut(s)	300, 565
Cfr10I	RCCGGY	1 cut(s)	432
Cfr13I	GGNCC	3 cut(s)	190, 238, 494
Cfr42I	CCGCGG	1 cut(s)	271
CseI	GACGC	3 cut(s)	262, 314, 612
Csp6I	GTAC	2 cut(s)	418, 469
CviQI	GTAC	2 cut(s)	418, 469
DdeI	CTNAG	3 cut(s)	73, 121, 396
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EaeI	YGGCCR	3 cut(s)	349, 385, 506
EagI	CGGCCG	3 cut(s)	349, 385, 506
Eam1104I	CTCTTC	4 cut(s)	209, 404, 567, 680
EarI	CTCTTC	4 cut(s)	209, 404, 567, 680
EciI	GGCGGA	1 cut(s)	352
EclXI	CGGCCG	3 cut(s)	349, 385, 506
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	2 cut(s)	248, 316
Eco47I	GGWCC	3 cut(s)	190, 238, 494
Eco52I	CGGCCG	3 cut(s)	349, 385, 506
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	122
Esp3I	CGTCTC	2 cut(s)	163, 298
FaqI	GGGAC	2 cut(s)	507, 599
FauI	CCCGC	4 cut(s)	103, 104, 266, 313
FokI	GGATG	1 cut(s)	623
FriOI	GRGCYC	1 cut(s)	122
FspBI	CTAG	2 cut(s)	131, 711
GlaI	GCGC	2 cut(s)	299, 564
GsaI	CCCAGC	1 cut(s)	494
HaeIII	GGCC	4 cut(s)	351, 387, 508, 578
HapII	CCGG	3 cut(s)	80, 352, 433
HgaI	GACGC	3 cut(s)	262, 314, 612
HhaI	GCGC	2 cut(s)	300, 565
Hin1I	GRCGYC	2 cut(s)	273, 623
Hin6I	GCGC	2 cut(s)	298, 563
HinP1I	GCGC	2 cut(s)	298, 563
HinfI	GANTC	3 cut(s)	85, 231, 340
HpaII	CCGG	3 cut(s)	80, 352, 433
HphI	GGTGA	4 cut(s)	172, 335, 461, 608
Hpy188I	TCNGA	3 cut(s)	190, 379, 480
Hpy188III	TCNNGA	1 cut(s)	123
Hpy99I	CGWCG	4 cut(s)	38, 278, 308, 628
HpyAV	CCTTC	4 cut(s)	64, 289, 449, 688
HpyCH4III	ACNGT	2 cut(s)	238, 590
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	8 cut(s)	117, 258, 267, 314, 371, 444, 511, 517
HpyF3I	CTNAG	3 cut(s)	73, 121, 396
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	2 cut(s)	273, 623
HspAI	GCGC	2 cut(s)	298, 563
KflI	GGGWCCC	1 cut(s)	494
KspI	CCGCGG	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	139, 502, 641
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	131, 711
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	232, 713
MalI	GATC	1 cut(s)	224
MbiI	CCGCTC	2 cut(s)	111, 505
MboI	GATC	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	1 cut(s)	616
MlyI	GAGTC	2 cut(s)	79, 240
MmeI	TCCRAC	1 cut(s)	402
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	3 cut(s)	270, 395, 490
MspI	CCGG	3 cut(s)	80, 352, 433
MspR9I	CCNGG	2 cut(s)	80, 499
MvaI	CCWGG	1 cut(s)	499
MvnI	CGCG	5 cut(s)	252, 270, 298, 308, 565
MwoI	GCNNNNNNNGC	8 cut(s)	117, 258, 267, 314, 371, 444, 511, 517
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	222
NlaIV	GGNNCC	4 cut(s)	127, 495, 496, 643
NmeAIII	GCCGAG	3 cut(s)	293, 413, 604
NmuCI	GTSAC	1 cut(s)	232
NotI	GCGGCCGC	1 cut(s)	506
PasI	CCCWGGG	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	340
Pfl23II	CGTACG	1 cut(s)	468
PflFI	GACNNNGTC	1 cut(s)	308
PleI	GAGTC	2 cut(s)	79, 239
PpsI	GAGTC	2 cut(s)	79, 239
PpuMI	RGGWCCY	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	497
PspLI	CGTACG	1 cut(s)	468
PspN4I	GGNNCC	4 cut(s)	127, 495, 496, 643
PspPI	GGNCC	3 cut(s)	190, 238, 494
PspPPI	RGGWCCY	1 cut(s)	494
PsyI	GACNNNGTC	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	2 cut(s)	419, 470
RsaNI	GTAC	2 cut(s)	418, 469
SacII	CCGCGG	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	405
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	3 cut(s)	190, 238, 494
SchI	GAGTC	2 cut(s)	79, 240
ScrFI	CCNGG	2 cut(s)	80, 499
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	1 cut(s)	318
Sfr303I	CCGCGG	1 cut(s)	271
SgrBI	CCGCGG	1 cut(s)	271
SinI	GGWCC	3 cut(s)	190, 238, 494
Sse9I	AATT	1 cut(s)	616
SspMI	CTAG	2 cut(s)	131, 711
StyD4I	CCNGG	2 cut(s)	78, 497
TaaI	ACNGT	2 cut(s)	238, 590
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	88, 168
TasI	AATT	1 cut(s)	616
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	1 cut(s)	308
VpaK11BI	GGWCC	3 cut(s)	190, 238, 494
XspI	CTAG	2 cut(s)	131, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.