AT3G10405

Domain of unknown function (DUF3783)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010336
Physical Location & Seq
Reverse (-)
3232457 .. 3235289
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10405.1

Sequence Viewer

Length: 639 bp
ATGTCGATTTCTTCGTTGGGGTCTGCAATCTCAAAGCCAACTTCTTCATCATCTTCATATACGTACTTAGGAAGCTCTTCTCGCATCTTTGGGCTAGTTACGTCTTCTTTGTTATGGACAAAGAGTAAATCTCACCACACAAACACAAAGCTCAAGAAGCAAAAGCTATGTGTTAGAAATTCAGCTCAAGAGATTCCAAAGACACTTGAGGAAGATTCCAAGTTTGTACCTTTAGATCCTCAAGATCCTCGATTCGGCCCTCCAGTTTTGCTGTTGCTTGGCCTTCAACTTCATGAAGCACAAAAGATACAAGAACTTCTCAAGGAACTCGATGGCGAATTCATGGAGATTGTGTTCTGTACAGACGATATGATCAAGCGTTCGTTATGGGAAGCAGTTACCACAAAACAGCCTGACCTGAAGAGAGTGAAAATCGCGGAATCACTGCCTCGGATCTGCTTCTTATCTGGTTTGACAGGAGAGGAGATGATGATGTTCATTGATGCATTCCCAGAAACTGGGCTGGAACCAGTTGTGTTTGCAGCTATGGTTCCGAACAGTGCTGATAAACCTATCTTTGAGTTAACTGAAGAAATCATGGGAGATCATGAGTTACTGACCGGGAGCAGTTCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3783

Protein Analysis

212

Amino Acids

23.5

Weight (kDa)

5.31

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3783 PF12646 151 - 205 2.7e-15 Domain of unknown function (DUF3783)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 518
AccII CGCG 1 cut(s) 437
AciI CCGC 1 cut(s) 437
AclWI GGATC 3 cut(s) 230, 239, 461
AcsI RAATTY 2 cut(s) 178, 338
AcuI CTGAAG 2 cut(s) 440, 609
AfaI GTAC 3 cut(s) 65, 228, 361
AfiI CCNNNNNNNGG 2 cut(s) 254, 518
AgsI TTSAA 1 cut(s) 287
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
AluBI AGCT 6 cut(s) 75, 151, 166, 185, 545, 636
AluI AGCT 6 cut(s) 75, 151, 166, 185, 545, 636
AlwI GGATC 3 cut(s) 230, 239, 461
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 2 cut(s) 256, 280
ApeKI GCWGC 1 cut(s) 542
ApoI RAATTY 2 cut(s) 178, 338
Asp700I GAANNNNTTC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 622
AsuHPI GGTGA 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 554
BccI CCATC 1 cut(s) 326
BclI TGATCA 1 cut(s) 372
BcnI CCSGG 1 cut(s) 622
BfaI CTAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 528, 552
BmrFI CCNGG 1 cut(s) 622
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 2 cut(s) 93, 493
BmuI ACTGGG 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 115, 147
BpmI CTGGAG 1 cut(s) 246
BpuEI CTTGAG 5 cut(s) 137, 171, 225, 227, 305
BpuMI CCSGG 1 cut(s) 622
BsaAI YACGTR 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 449
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 518
Bse1I ACTGG 3 cut(s) 263, 523, 530
BseDI CCNNGG 1 cut(s) 449
BseLI CCNNNNNNNGG 2 cut(s) 254, 518
BseNI ACTGG 3 cut(s) 263, 523, 530
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 1 cut(s) 554
Bsh1236I CGCG 1 cut(s) 437
BshFI GGCC 2 cut(s) 258, 282
BsiSI CCGG 1 cut(s) 621
BslI CCNNNNNNNGG 2 cut(s) 254, 518
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 2 cut(s) 258, 282
Bsp1407I TGTACA 1 cut(s) 359
Bsp143I GATC 5 cut(s) 235, 244, 372, 453, 604
BspACI CCGC 1 cut(s) 437
BspANI GGCC 2 cut(s) 258, 282
BspFNI CGCG 1 cut(s) 437
BspHI TCATGA 2 cut(s) 292, 607
BspLI GGNNCC 2 cut(s) 528, 552
BspPI GGATC 3 cut(s) 230, 239, 461
BspQI GCTCTTC 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 359
BsrI ACTGG 3 cut(s) 263, 523, 530
BssECI CCNNGG 1 cut(s) 449
BssMI GATC 5 cut(s) 235, 244, 372, 453, 604
Bst4CI ACNGT 1 cut(s) 560
Bst6I CTCTTC 2 cut(s) 82, 416
BstAUI TGTACA 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 437
BstKTI GATC 5 cut(s) 238, 247, 375, 456, 607
BstMBI GATC 5 cut(s) 235, 244, 372, 453, 604
BstMWI GCNNNNNNNGC 3 cut(s) 81, 157, 633
BstSCI CCNGG 1 cut(s) 620
BstSNI TACGTA 1 cut(s) 63
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 554
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 3 cut(s) 235, 244, 453
BstYI RGATCY 3 cut(s) 235, 244, 453
BsuRI GGCC 2 cut(s) 258, 282
BtsI GCAGTG 1 cut(s) 443
BtsIMutI CAGTG 2 cut(s) 443, 565
CaiI CAGNNNCTG 1 cut(s) 518
CciI TCATGA 2 cut(s) 292, 607
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 3 cut(s) 64, 227, 360
CviAII CATG 4 cut(s) 293, 343, 598, 608
CviQI GTAC 3 cut(s) 64, 227, 360
DdeI CTNAG 1 cut(s) 67
DpnI GATC 5 cut(s) 237, 246, 374, 455, 606
DpnII GATC 5 cut(s) 235, 244, 372, 453, 604
Eam1104I CTCTTC 2 cut(s) 82, 416
EarI CTCTTC 2 cut(s) 82, 416
Eco105I TACGTA 1 cut(s) 63
Eco57I CTGAAG 2 cut(s) 440, 609
EcoRI GAATTC 1 cut(s) 338
EcoT22I ATGCAT 1 cut(s) 508
FaeI CATG 4 cut(s) 296, 346, 601, 611
FatI CATG 4 cut(s) 292, 342, 597, 607
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 543
Fsp4HI GCNGC 1 cut(s) 543
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 543
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 2 cut(s) 258, 282
HapII CCGG 1 cut(s) 621
Hin1II CATG 4 cut(s) 296, 346, 601, 611
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 4 cut(s) 193, 215, 252, 440
HpaI GTTAAC 1 cut(s) 585
HpaII CCGG 1 cut(s) 621
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 585
Hpy188I TCNGA 2 cut(s) 453, 555
Hpy188III TCNNGA 5 cut(s) 154, 188, 242, 293, 608
Hpy8I GTNNAC 1 cut(s) 585
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4IV ACGT 2 cut(s) 62, 101
HpyCH4V TGCA 3 cut(s) 26, 506, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 157, 633
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 2 cut(s) 62, 101
Hsp92II CATG 4 cut(s) 296, 346, 601, 611
Ksp22I TGATCA 1 cut(s) 372
KspAI GTTAAC 1 cut(s) 585
Kzo9I GATC 5 cut(s) 235, 244, 372, 453, 604
LguI GCTCTTC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 624
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 2 cut(s) 93, 493
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 62, 101
MaeIII GTNAC 3 cut(s) 97, 397, 612
MalI GATC 5 cut(s) 237, 246, 374, 455, 606
MboI GATC 5 cut(s) 235, 244, 372, 453, 604
MboII GAAGA 8 cut(s) 3, 36, 45, 69, 96, 224, 433, 602
MflI RGATCY 3 cut(s) 235, 244, 453
MluCI AATT 2 cut(s) 178, 338
MnlI CCTC 6 cut(s) 202, 249, 258, 270, 459, 475
Mph1103I ATGCAT 1 cut(s) 508
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 636
MspI CCGG 1 cut(s) 621
MspR9I CCNGG 1 cut(s) 622
Mva1269I GAATGC 1 cut(s) 506
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 3 cut(s) 81, 157, 633
NciI CCSGG 1 cut(s) 622
NdeII GATC 5 cut(s) 235, 244, 372, 453, 604
NlaIII CATG 4 cut(s) 296, 346, 601, 611
NlaIV GGNNCC 2 cut(s) 528, 552
NsiI ATGCAT 1 cut(s) 508
PagI TCATGA 2 cut(s) 292, 607
PciSI GCTCTTC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 4 cut(s) 193, 215, 252, 440
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 1 cut(s) 544
Ppu21I YACGTR 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 528, 552
PspPI GGNCC 1 cut(s) 257
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 3 cut(s) 235, 244, 453
PvuII CAGCTG 1 cut(s) 636
RsaI GTAC 3 cut(s) 65, 228, 361
RsaNI GTAC 3 cut(s) 64, 227, 360
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 584
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 5 cut(s) 235, 244, 372, 453, 604
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 622
SfaNI GCATC 2 cut(s) 93, 493
SmlI CTYRAG 5 cut(s) 152, 186, 206, 240, 320
SmoI CTYRAG 5 cut(s) 152, 186, 206, 240, 320
SnaBI TACGTA 1 cut(s) 63
Sse9I AATT 2 cut(s) 178, 338
SsiI CCGC 1 cut(s) 437
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 620
TaaI ACNGT 1 cut(s) 560
TaiI ACGT 2 cut(s) 65, 104
TaqI TCGA 3 cut(s) 5, 250, 330
TasI AATT 2 cut(s) 178, 338
TatI WGTACW 1 cut(s) 359
TfiI GAWTC 4 cut(s) 193, 215, 252, 440
Tru1I TTAA 1 cut(s) 584
Tru9I TTAA 1 cut(s) 584
TscAI CASTG 2 cut(s) 450, 565
TseI GCWGC 1 cut(s) 542
TspDTI ATGAA 6 cut(s) 36, 45, 281, 309, 331, 487
TspRI CASTG 2 cut(s) 450, 565
Van91I CCANNNNNTGG 1 cut(s) 518
XapI RAATTY 2 cut(s) 178, 338
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.