Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010336

Physical Location & Seq

Genomic Coordinates Reverse (-)

14307039 .. 14310335

Gene Structure 3297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCATCTGCTCTTGCCTTCTCTCTGAATTCTCATCTGCTTTTGGTTCGTCGTTCAATTTCCTTAACTCCTTTGCTAGCTCCACATATTTCAACAGTTTCTTCACCATCAGCAACCAAAACCCATAACTTGAAGCTCAAGCACTCACCCAGAGCGTCTGCTGAAGGAGTTCCCAGTGAATTGAGCGAAGATTCCAAATTTGTTCCACTTAATGCTGAAAGTATGATATTTGGCCCACCTGTACAAGATTTTCTGAAACAGATAGGAGGTGATTTCCTCAAGGTTATTTATTGTACTGAAGACATGATCACTCGTTCACTTTGGGAAGCAATGAATACAATCCAACCCAATTTGGAGGAAGTGAAGATTGCTAAGCGCTGCCGCGAATCTGTTTCTTATCTGGTCTTAGTGGGGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3783

Protein Analysis

140

Amino Acids

15.45

Weight (kDa)

9.0

Isoelectric Point (pI)

62.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10405
fragaria_vesca	FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710
malus_domestica	MD01G1102700.v1.1
prunus_persica	Prupe.2G208300_v2.0.a1 Prupe.2G208300_v2.0.a1
pyrus_communis	pycom01g12920
rosa_chinensis	RchiOBHm_Chr1g0362491
rosa_laevigata	RLG00000027643
rosa_multiflora	Rmu_sc0007589.1_g000004 Rmu_sc0007589.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294110
rosa_rugosa	Rorug01G0298400
rosa_samantha	Rh1AG307800 Rh1BG270900 Rh1CG288600 Rh1DG301100
rosa_wichuraiana	Rw1G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	384
AciI	CCGC	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	28, 197
AcuI	CTGAAG	2 cut(s)	183, 318
AfaI	GTAC	2 cut(s)	243, 295
AfeI	AGCGCT	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	57, 93, 133
AluBI	AGCT	2 cut(s)	80, 136
AluI	AGCT	2 cut(s)	80, 136
Aor51HI	AGCGCT	1 cut(s)	377
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	28, 197
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	96, 138, 281
AsuNHI	GCTAGC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	306
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	2 cut(s)	379, 382
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	2 cut(s)	380, 383
BmgT120I	GGNCC	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	122, 263
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	306
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	336
BsrGI	TGTACA	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	372, 406
BstFNI	CGCG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	306
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	242, 294
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	3 cut(s)	80, 136, 234
CviKI_1	RGCY	3 cut(s)	80, 136, 234
CviQI	GTAC	2 cut(s)	242, 294
DdeI	CTNAG	2 cut(s)	372, 406
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco47III	AGCGCT	1 cut(s)	377
Eco57I	CTGAAG	2 cut(s)	183, 318
EcoRI	GAATTC	1 cut(s)	28
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	87, 126, 224, 305
FatI	CATG	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	379, 382
Fsp4HI	GCNGC	2 cut(s)	379, 382
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	379, 382
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	234
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	307
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	2 cut(s)	191, 386
HphI	GGTGA	3 cut(s)	96, 138, 281
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	2 cut(s)	27, 255
Hpy8I	GTNNAC	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	28, 158
HpyCH4III	ACNGT	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	372, 406
Hsp92II	CATG	1 cut(s)	307
HspAI	GCGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	163, 187, 252, 386
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	77
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	4 cut(s)	93, 200, 311, 376
MluCI	AATT	5 cut(s)	28, 57, 179, 197, 349
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	3 cut(s)	260, 287, 349
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	65, 210
MvnI	CGCG	1 cut(s)	384
NdeII	GATC	1 cut(s)	306
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	191, 386
PkrI	GCNGC	2 cut(s)	380, 383
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	243, 295
RsaNI	GTAC	2 cut(s)	242, 294
SaqAI	TTAA	2 cut(s)	65, 210
SatI	GCNGC	2 cut(s)	379, 382
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	1 cut(s)	233
SetI	ASST	5 cut(s)	82, 138, 241, 271, 285
SfaNI	GCATC	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	137, 278
SmoI	CTYRAG	2 cut(s)	137, 278
Sse9I	AATT	5 cut(s)	28, 57, 179, 197, 349
SsiI	CCGC	1 cut(s)	382
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	97
TasI	AATT	5 cut(s)	28, 57, 179, 197, 349
TatI	WGTACW	2 cut(s)	241, 293
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	191, 386
Tru1I	TTAA	2 cut(s)	65, 210
Tru9I	TTAA	2 cut(s)	65, 210
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	2 cut(s)	28, 197
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.