Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010336

Physical Location & Seq

Genomic Coordinates Forward (+)

56131120 .. 56135107

Gene Structure 3988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG288600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCATCTGCTCTTGCCTTCTCTCTGAATTCTCATCTTCTTTTGGTTCCTCCTTCAATTTCCTTAACTCCTTTGCTAGCTCCACATATTTCAACAGTTTCTTCCTCATCAGCAACCAAAACCCATCACTTGAAGCTCAAGCACTCACCCAGAGCGTCTGCTGAAGGAGTTCCCAGTGAATTGAGTGAAGATTCCAAATTCGTTCCTCTTAATGCTGAAAGTATGATATTTGGTCCACCTGCTTTGTTATTATTGGGCTTTGAAGTGGAGGAAGCTGCGACGGTACAAGATTTTCTGAAACAGATAGGAGGTGATTTCCTCAAGGTTATTTATTGTACTGAAGACATGATCACTCGTTCACTTTGGGAAGCAATGAATACAATCCAACCCAATTTGGAGGAAGTGAAGATTGCTAAGCCGCTGCCGCGAATCTGTTTCTTATCTGGTCTTAGTGGGGAAGAGATGATGATGTTGATTGATGATTTTCCAGAGACAGGTGCCTTATCCATCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3783

Protein Analysis

171

Amino Acids

18.52

Weight (kDa)

4.91

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10405
fragaria_vesca	FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710
malus_domestica	MD01G1102700.v1.1
prunus_persica	Prupe.2G208300_v2.0.a1 Prupe.2G208300_v2.0.a1
pyrus_communis	pycom01g12920
rosa_chinensis	RchiOBHm_Chr1g0362491
rosa_laevigata	RLG00000027643
rosa_multiflora	Rmu_sc0007589.1_g000004 Rmu_sc0007589.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294110
rosa_rugosa	Rorug01G0298400
rosa_samantha	Rh1AG307800 Rh1BG270900 Rh1CG288600 Rh1DG301100
rosa_wichuraiana	Rw1G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	497
AccII	CGCG	1 cut(s)	427
AciI	CCGC	2 cut(s)	419, 425
AcsI	RAATTY	2 cut(s)	28, 197
AcuI	CTGAAG	2 cut(s)	183, 360
AfaI	GTAC	2 cut(s)	285, 337
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	4 cut(s)	57, 93, 133, 263
AluBI	AGCT	3 cut(s)	80, 136, 275
AluI	AGCT	3 cut(s)	80, 136, 275
Alw26I	GTCTC	1 cut(s)	485
ApeKI	GCWGC	2 cut(s)	275, 421
ApoI	RAATTY	2 cut(s)	28, 197
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	138, 323
AsuNHI	GCTAGC	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	262, 408
BccI	CCATC	2 cut(s)	132, 515
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	4 cut(s)	276, 419, 422, 425
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	4 cut(s)	277, 420, 423, 426
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	48, 499
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	122, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	262, 408
Bsh1236I	CGCG	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	1 cut(s)	485
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	419, 425
BspFNI	CGCG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	48, 499
BspMI	ACCTGC	1 cut(s)	247
BspOI	GCTAGC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	97, 283
Bst6I	CTCTTC	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	414, 449
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	1 cut(s)	427
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	262, 408
BstV2I	GAAGAC	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	284, 336
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	5 cut(s)	80, 136, 258, 275, 418
CviKI_1	RGCY	5 cut(s)	80, 136, 258, 275, 418
CviQI	GTAC	2 cut(s)	284, 336
DdeI	CTNAG	2 cut(s)	414, 449
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	2 cut(s)	183, 360
EcoRI	GAATTC	1 cut(s)	28
FaeI	CATG	1 cut(s)	349
FaiI	YATR	4 cut(s)	87, 224, 347, 514
FatI	CATG	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	276, 419, 422, 425
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	4 cut(s)	276, 419, 422, 425
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	4 cut(s)	276, 419, 422, 425
HgaI	GACGC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	349
HinfI	GANTC	2 cut(s)	191, 429
HphI	GGTGA	2 cut(s)	138, 323
Hpy166II	GTNNAC	2 cut(s)	236, 359
Hpy188I	TCNGA	2 cut(s)	27, 297
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	2 cut(s)	236, 359
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	28, 63, 158
HpyCH4III	ACNGT	2 cut(s)	97, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	2 cut(s)	414, 449
Hsp92II	CATG	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	6 cut(s)	163, 187, 252, 429, 480, 501
Lsp1109I	GCAGC	2 cut(s)	262, 408
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	77
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	6 cut(s)	29, 93, 200, 353, 418, 470
MluCI	AATT	5 cut(s)	28, 57, 179, 197, 391
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	7 cut(s)	60, 115, 216, 262, 302, 329, 391
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	65, 210
MspA1I	CMGCKG	1 cut(s)	421
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	424
NdeII	GATC	1 cut(s)	348
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	2 cut(s)	48, 499
PaqCI	CACCTGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	191, 429
PkrI	GCNGC	4 cut(s)	277, 420, 423, 426
PspN4I	GGNNCC	2 cut(s)	48, 499
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	285, 337
RsaNI	GTAC	2 cut(s)	284, 336
SaqAI	TTAA	2 cut(s)	65, 210
SatI	GCNGC	4 cut(s)	276, 419, 422, 425
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	233
SetI	ASST	7 cut(s)	82, 138, 241, 277, 313, 327, 499
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	137, 320
SmoI	CTYRAG	2 cut(s)	137, 320
Sse9I	AATT	5 cut(s)	28, 57, 179, 197, 391
SsiI	CCGC	2 cut(s)	419, 425
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	97, 283
TasI	AATT	5 cut(s)	28, 57, 179, 197, 391
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	2 cut(s)	421, 427
TfiI	GAWTC	2 cut(s)	191, 429
Tru1I	TTAA	2 cut(s)	65, 210
Tru9I	TTAA	2 cut(s)	65, 210
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	2 cut(s)	275, 421
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	2 cut(s)	28, 197
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.