Rw1G027310

Domain of unknown function (DUF3783)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0010336
Physical Location & Seq
Forward (+)
54787949 .. 54792576
4628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027310.1

Sequence Viewer

Length: 675 bp
ATGGCATCTGCTCTTGCCTTCTCTCTGAATTCTCATCTTCTTTTGGTTCCTCCTTCAATTTCCTTAACTCCTTTGCTAGCTCCACATATTTCAACAGTTTCTTCCTCATCAGCAACCAAAACCCATCACTTGAAGCTCAAGCACTCACCCAGAGCGTCTGCTGAAGGAGTTCCCAGTGAATTGAGTGAAGATTCCAAATTCGTTCCTCTTAATGCTGAAAGTATGATATTTGGTCCACCTGCTTTGTTATTATTGGGCTTTGAAGTGGAGGAAGCTGCGACGGTACAAGATTTTCTGAAACAGATAGGAGGTGATTTCCTCAAGGTTATTTATTGTACTGAAGACATGATCACTCGTTCACTTTGGGAAGCAATGAATACAATCCAACCCAATTTGGAGGAAGTGAAGATTGCTAAGCCGCTGCCGCGAATCTGTTTCTTATCTGGTCTTAGTGGGGAAGAGATGATGATGTTGATTGATGATTTTCCAGAGACAGGACTTGAACCAGCTGTTTTTGCAGCTCTTGTTCCCAACAGCGCTGAGAAACCGATAGAGGAGTTGATAGACGAGATTATGGCAGATCATGAAATGATAGTGACTGCCCTTTCTCGCTTAAAAAACAAAAAAAACGAAAATCTCAACAAAAAAAAAATGTTATTTCAATTCAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3783

Protein Analysis

224

Amino Acids

24.66

Weight (kDa)

5.08

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3783 PF12646 143 - 197 1.5e-17 Domain of unknown function (DUF3783)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 247
Acc36I ACCTGC 1 cut(s) 247
AccII CGCG 1 cut(s) 427
AciI CCGC 2 cut(s) 419, 425
AcsI RAATTY 2 cut(s) 28, 197
AcuI CTGAAG 2 cut(s) 183, 360
AfaI GTAC 2 cut(s) 285, 337
AfeI AGCGCT 1 cut(s) 538
AfiI CCNNNNNNNGG 1 cut(s) 494
AgsI TTSAA 7 cut(s) 57, 93, 133, 263, 503, 662, 667
AluBI AGCT 5 cut(s) 80, 136, 275, 509, 521
AluI AGCT 5 cut(s) 80, 136, 275, 509, 521
Alw26I GTCTC 1 cut(s) 485
Aor51HI AGCGCT 1 cut(s) 538
ApeKI GCWGC 3 cut(s) 275, 421, 518
ApoI RAATTY 2 cut(s) 28, 197
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 138, 323
AsuNHI GCTAGC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 262, 408, 530
BccI CCATC 1 cut(s) 132
BclI TGATCA 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 540
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 5 cut(s) 276, 419, 422, 425, 519
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 5 cut(s) 277, 420, 423, 426, 520
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 48
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 14
BmtI GCTAGC 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 122, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 3 cut(s) 262, 408, 530
Bsh1236I CGCG 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 1 cut(s) 485
Bsp143I GATC 2 cut(s) 348, 580
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 2 cut(s) 419, 425
BspCNI CTCAG 1 cut(s) 532
BspFNI CGCG 1 cut(s) 427
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 1 cut(s) 174
BssMI GATC 2 cut(s) 348, 580
Bst4CI ACNGT 2 cut(s) 97, 283
Bst6I CTCTTC 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 414, 449, 540
BstFNI CGCG 1 cut(s) 427
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 2 cut(s) 351, 583
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 2 cut(s) 348, 580
BstMWI GCNNNNNNNGC 2 cut(s) 424, 515
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 3 cut(s) 262, 408, 530
BstV2I GAAGAC 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 181
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 583
CfoI GCGC 1 cut(s) 539
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 284, 336
CspCI CAANNNNNGTGG 2 cut(s) 225, 260
CviAII CATG 2 cut(s) 346, 584
CviJI RGCY 7 cut(s) 80, 136, 258, 275, 418, 509, 521
CviKI_1 RGCY 7 cut(s) 80, 136, 258, 275, 418, 509, 521
CviQI GTAC 2 cut(s) 284, 336
DdeI CTNAG 3 cut(s) 414, 449, 540
DpnI GATC 2 cut(s) 350, 582
DpnII GATC 2 cut(s) 348, 580
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 233
Eco47III AGCGCT 1 cut(s) 538
Eco57I CTGAAG 2 cut(s) 183, 360
EcoRI GAATTC 1 cut(s) 28
FaeI CATG 2 cut(s) 349, 587
FaiI YATR 5 cut(s) 87, 224, 347, 575, 585
FatI CATG 2 cut(s) 345, 583
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 5 cut(s) 276, 419, 422, 425, 519
Fsp4HI GCNGC 5 cut(s) 276, 419, 422, 425, 519
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 538
GluI GCNGC 5 cut(s) 276, 419, 422, 425, 519
HaeII RGCGCY 1 cut(s) 540
HgaI GACGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 539
Hin1II CATG 2 cut(s) 349, 587
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HinfI GANTC 2 cut(s) 191, 429
HphI GGTGA 2 cut(s) 138, 323
Hpy166II GTNNAC 2 cut(s) 236, 359
Hpy188I TCNGA 2 cut(s) 27, 297
Hpy188III TCNNGA 2 cut(s) 488, 584
Hpy8I GTNNAC 2 cut(s) 236, 359
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 28, 63, 158
HpyCH4III ACNGT 2 cut(s) 97, 283
HpyCH4V TGCA 1 cut(s) 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 515
HpyF3I CTNAG 3 cut(s) 414, 449, 540
Hsp92II CATG 2 cut(s) 349, 587
HspAI GCGC 1 cut(s) 537
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 2 cut(s) 348, 580
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 163, 187, 252, 429, 480, 501, 519
Lsp1109I GCAGC 3 cut(s) 262, 408, 530
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 595
MalI GATC 2 cut(s) 350, 582
MboI GATC 2 cut(s) 348, 580
MboII GAAGA 6 cut(s) 29, 93, 200, 353, 418, 470
MluCI AATT 7 cut(s) 28, 57, 179, 197, 391, 662, 670
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 8 cut(s) 60, 115, 216, 262, 302, 329, 391, 547
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 3 cut(s) 65, 210, 614
MspA1I CMGCKG 2 cut(s) 421, 509
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 424, 515
NdeII GATC 2 cut(s) 348, 580
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 2 cut(s) 349, 587
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 595
PagI TCATGA 1 cut(s) 583
PaqCI CACCTGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 191, 429
PkrI GCNGC 5 cut(s) 277, 420, 423, 426, 520
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 2 cut(s) 285, 337
RsaNI GTAC 2 cut(s) 284, 336
SaqAI TTAA 3 cut(s) 65, 210, 614
SatI GCNGC 5 cut(s) 276, 419, 422, 425, 519
Sau3AI GATC 2 cut(s) 348, 580
Sau96I GGNCC 1 cut(s) 233
SetI ASST 8 cut(s) 82, 138, 241, 277, 313, 327, 511, 523
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 137, 320
SmoI CTYRAG 2 cut(s) 137, 320
Sse9I AATT 7 cut(s) 28, 57, 179, 197, 391, 662, 670
SsiI CCGC 2 cut(s) 419, 425
SspMI CTAG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 97, 283
TasI AATT 7 cut(s) 28, 57, 179, 197, 391, 662, 670
TatI WGTACW 1 cut(s) 335
TauI GCSGC 2 cut(s) 421, 427
TfiI GAWTC 2 cut(s) 191, 429
Tru1I TTAA 3 cut(s) 65, 210, 614
Tru9I TTAA 3 cut(s) 65, 210, 614
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 3 cut(s) 275, 421, 518
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 2 cut(s) 389, 600
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 2 cut(s) 28, 197
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.