FvH4_7g18710

Domain of unknown function (DUF3783)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010336
Physical Location & Seq
Forward (+)
15538003 .. 15540856
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18710.t1

Sequence Viewer

Length: 645 bp
ATGGCATCTGCTCTTGCCTTCTCTCTCAATTCTCATCTGCTTTTGGTTCCTTCAATTTCCTTAACTCCTTTGCTACCTCCACACATTTCTACAGTTTCTTCATCATCAGCAACCAAAACCCATCATTGGAAGCTCAACTACTCCCCTAGAGCATCTGCTGAAGGAGTGCCCGGTGAATTGAGTGAAGAAGAGTCCAAGTTCGTTCCTCTTAATGCTGAAAGTATGATATTTGGTCCACCTGCTTTGTTATTGCTGGGATTTGAACTGGAAGAAGCCGCGACGGTACAAGATTTTCTGAAACAGATAGGAGGTGATTTCCTCAAGATTATTTATTGTACTGAAGACATGATCACTGGTTCACTATGGGATGCAATGAATACAATCCAACCCAATTTGGAGGAAGTGAAGATTGCTAAGCCACTGCCGCGAATATGTTTCTTATCTGGTCTTAGTGGGGAAGAGATGATGATGTTGATTGATGATTTTCCAGAGACAGGACTCGAACCAGCTGTTTTTGCAGCTCTTGTTCCCAACAGTGCCGAGAAACCAATAGAAGAGTTGATAGACGAGATTATGGCTGATCATGAAATGATAACCAAGAAAATGGAAGAGGAAATGAGCAAAAATCCGATAAATGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3783

Protein Analysis

215

Amino Acids

23.44

Weight (kDa)

4.44

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3783 PF12646 143 - 197 1.4e-17 Domain of unknown function (DUF3783)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 247
Acc36I ACCTGC 1 cut(s) 247
AccII CGCG 2 cut(s) 278, 427
AciI CCGC 2 cut(s) 276, 425
AcuI CTGAAG 2 cut(s) 180, 360
AfaI GTAC 2 cut(s) 285, 337
AfiI CCNNNNNNNGG 2 cut(s) 126, 494
AgsI TTSAA 2 cut(s) 54, 263
AluBI AGCT 3 cut(s) 133, 509, 521
AluI AGCT 3 cut(s) 133, 509, 521
Alw26I GTCTC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 518
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 185, 323
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 171
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 530
BccI CCATC 1 cut(s) 129
BclI TGATCA 2 cut(s) 348, 580
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 3 cut(s) 276, 425, 519
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 3 cut(s) 277, 426, 520
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 3 cut(s) 14, 161, 358
BpiI GAAGAC 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 494
Bse1I ACTGG 2 cut(s) 270, 358
Bse3DI GCAATG 1 cut(s) 378
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 126, 494
BseMI GCAATG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 270, 358
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 1 cut(s) 530
BseYI CCCAGC 1 cut(s) 253
Bsh1236I CGCG 2 cut(s) 278, 427
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 126, 494
BsmAI GTCTC 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 348, 580
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 2 cut(s) 276, 425
BspFNI CGCG 2 cut(s) 278, 427
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 2 cut(s) 270, 358
BssMI GATC 2 cut(s) 348, 580
Bst4CI ACNGT 3 cut(s) 94, 283, 536
Bst6I CTCTTC 4 cut(s) 183, 453, 549, 603
BstDEI CTNAG 2 cut(s) 414, 449
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 2 cut(s) 278, 427
BstKTI GATC 2 cut(s) 351, 583
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 2 cut(s) 348, 580
BstMWI GCNNNNNNNGC 2 cut(s) 424, 515
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 2 cut(s) 278, 427
BstV1I GCAGC 1 cut(s) 530
BstV2I GAAGAC 1 cut(s) 348
BstXI CCANNNNNNTGG 1 cut(s) 604
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 3 cut(s) 351, 419, 541
BveI ACCTGC 1 cut(s) 247
CciI TCATGA 1 cut(s) 583
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 284, 336
CspCI CAANNNNNGTGG 2 cut(s) 225, 260
CviAII CATG 2 cut(s) 346, 584
CviJI RGCY 6 cut(s) 133, 275, 418, 509, 521, 578
CviKI_1 RGCY 6 cut(s) 133, 275, 418, 509, 521, 578
CviQI GTAC 2 cut(s) 284, 336
DdeI CTNAG 2 cut(s) 414, 449
DpnI GATC 2 cut(s) 350, 582
DpnII GATC 2 cut(s) 348, 580
Eam1104I CTCTTC 4 cut(s) 183, 453, 549, 603
EarI CTCTTC 4 cut(s) 183, 453, 549, 603
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 2 cut(s) 180, 360
FaeI CATG 2 cut(s) 349, 587
FaiI YATR 6 cut(s) 224, 347, 364, 433, 575, 585
FatI CATG 2 cut(s) 345, 583
FbaI TGATCA 2 cut(s) 348, 580
Fnu4HI GCNGC 3 cut(s) 276, 425, 519
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 3 cut(s) 276, 425, 519
FspBI CTAG 1 cut(s) 147
GluI GCNGC 3 cut(s) 276, 425, 519
GsaI CCCAGC 1 cut(s) 257
HapII CCGG 1 cut(s) 171
Hin1II CATG 2 cut(s) 349, 587
HinfI GANTC 2 cut(s) 191, 498
HpaII CCGG 1 cut(s) 171
HphI GGTGA 2 cut(s) 185, 323
Hpy166II GTNNAC 2 cut(s) 236, 359
Hpy188I TCNGA 2 cut(s) 297, 630
Hpy188III TCNNGA 3 cut(s) 322, 488, 584
Hpy8I GTNNAC 2 cut(s) 236, 359
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 4 cut(s) 28, 60, 155, 632
HpyCH4III ACNGT 3 cut(s) 94, 283, 536
HpyCH4V TGCA 2 cut(s) 371, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 515
HpyF3I CTNAG 2 cut(s) 414, 449
Hsp92II CATG 2 cut(s) 349, 587
Ksp22I TGATCA 2 cut(s) 348, 580
Kzo9I GATC 2 cut(s) 348, 580
LpnPI CCDG 9 cut(s) 184, 239, 251, 252, 339, 429, 480, 501, 519
Lsp1109I GCAGC 1 cut(s) 530
LweI GCATC 3 cut(s) 14, 161, 358
MaeI CTAG 1 cut(s) 147
MalI GATC 2 cut(s) 350, 582
MboI GATC 2 cut(s) 348, 580
MboII GAAGA 9 cut(s) 90, 197, 200, 281, 353, 418, 470, 566, 620
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 4 cut(s) 28, 54, 176, 391
MlyI GAGTC 2 cut(s) 200, 492
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 6 cut(s) 87, 216, 302, 329, 391, 604
MseI TTAA 2 cut(s) 62, 210
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 171
MvnI CGCG 2 cut(s) 278, 427
MwoI GCNNNNNNNGC 2 cut(s) 424, 515
NciI CCSGG 1 cut(s) 171
NdeII GATC 2 cut(s) 348, 580
NlaIII CATG 2 cut(s) 349, 587
NlaIV GGNNCC 1 cut(s) 48
NmeAIII GCCGAG 1 cut(s) 565
PagI TCATGA 1 cut(s) 583
PaqCI CACCTGC 1 cut(s) 247
PkrI GCNGC 3 cut(s) 277, 426, 520
PleI GAGTC 2 cut(s) 199, 492
PpsI GAGTC 2 cut(s) 199, 492
PspFI CCCAGC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 2 cut(s) 285, 337
RsaNI GTAC 2 cut(s) 284, 336
SaqAI TTAA 2 cut(s) 62, 210
SatI GCNGC 3 cut(s) 276, 425, 519
Sau3AI GATC 2 cut(s) 348, 580
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 2 cut(s) 200, 492
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 171
SetI ASST 7 cut(s) 79, 135, 241, 313, 511, 523, 643
SfaNI GCATC 3 cut(s) 14, 161, 358
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 4 cut(s) 28, 54, 176, 391
SsiI CCGC 2 cut(s) 276, 425
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 3 cut(s) 94, 283, 536
TaqI TCGA 1 cut(s) 501
TasI AATT 4 cut(s) 28, 54, 176, 391
TatI WGTACW 1 cut(s) 335
TauI GCSGC 2 cut(s) 278, 427
Tru1I TTAA 2 cut(s) 62, 210
Tru9I TTAA 2 cut(s) 62, 210
TscAI CASTG 3 cut(s) 358, 426, 541
TseI GCWGC 1 cut(s) 518
TspDTI ATGAA 3 cut(s) 90, 389, 600
TspRI CASTG 3 cut(s) 358, 426, 541
VpaK11BI GGWCC 1 cut(s) 233
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.