Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007589.1

Orthogroup ID

OG0010336

Physical Location & Seq

Genomic Coordinates Reverse (-)

21144 .. 24215

Gene Structure 3072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007589.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggcatctgctcttgccttctctctgaattctcatctgcttttggttcctccttcaatttccttaactcctttgctagctccacatatttcaacagtttcttcatcatcagcaaccaaaacccatctcttgaagctcaagcactcaccccgagcgtctgctgaaggagttcccagtgaattgggtgaagattccaaattcgttcctcttaatgctgaaagtatgatatttggtccacctgctttgttattattgggctttgaagtggaggaagctgcgacggtacaagattttctgaaacagataggaggtgatttcctcaaggttatttattgtactgaagacatgatcactcgttcactttgggaagcaatgaatacaatccaacccaatttggaggaagtgaagattgctaagccgctgccgcgaatctgtttcttatctggtcttagtggggaagagatgatgatgttgattgatgattttccagagacaggtgccttaattgctaagccgctgccgcgaatctgtttcttatctggtcttagtggggaagagatgatgatgttgattgatgattttccagagacaggactggaaccagctgtttttgcagctcttgttcccaacagcgctgagaaaccgatagaggagttgatagacgagattatggcagatcatgaaatgataaccaagaaaatggaagagggcataggcaaatccgataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3783

Protein Analysis

243

Amino Acids

26.41

Weight (kDa)

4.58

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10405
fragaria_vesca	FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710
malus_domestica	MD01G1102700.v1.1
prunus_persica	Prupe.2G208300_v2.0.a1 Prupe.2G208300_v2.0.a1
pyrus_communis	pycom01g12920
rosa_chinensis	RchiOBHm_Chr1g0362491
rosa_laevigata	RLG00000027643
rosa_multiflora	Rmu_sc0007589.1_g000004 Rmu_sc0007589.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294110
rosa_rugosa	Rorug01G0298400
rosa_samantha	Rh1AG307800 Rh1BG270900 Rh1CG288600 Rh1DG301100
rosa_wichuraiana	Rw1G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	497
AccII	CGCG	2 cut(s)	427, 523
AciI	CCGC	4 cut(s)	419, 425, 515, 521
AcsI	RAATTY	2 cut(s)	28, 197
AcuI	CTGAAG	2 cut(s)	183, 360
AfaI	GTAC	2 cut(s)	285, 337
AfeI	AGCGCT	1 cut(s)	634
AfiI	CCNNNNNNNGG	2 cut(s)	494, 590
AgsI	TTSAA	4 cut(s)	57, 93, 133, 263
AluBI	AGCT	5 cut(s)	80, 136, 275, 605, 617
AluI	AGCT	5 cut(s)	80, 136, 275, 605, 617
Alw26I	GTCTC	2 cut(s)	485, 581
Ama87I	CYCGRG	1 cut(s)	150
Aor51HI	AGCGCT	1 cut(s)	634
ApeKI	GCWGC	4 cut(s)	275, 421, 517, 614
ApoI	RAATTY	2 cut(s)	28, 197
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	138, 197, 323
AsuNHI	GCTAGC	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	262, 408, 504, 626
BccI	CCATC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	485, 581
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	8 cut(s)	276, 419, 422, 425, 515, 518, 521, 615
BlpI	GCTNAGC	2 cut(s)	414, 510
BlsI	GCNGC	8 cut(s)	277, 420, 423, 426, 516, 519, 522, 616
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	3 cut(s)	48, 499, 600
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	348
Bpu1102I	GCTNAGC	2 cut(s)	414, 510
BpuEI	CTTGAG	2 cut(s)	122, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	494, 590
Bse1I	ACTGG	2 cut(s)	174, 600
Bse3DI	GCAATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	494, 590
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	2 cut(s)	174, 600
BseRI	GAGGAG	1 cut(s)	665
BseXI	GCAGC	4 cut(s)	262, 408, 504, 626
Bsh1236I	CGCG	2 cut(s)	427, 523
BshNI	GGYRCC	1 cut(s)	497
BsiHKCI	CYCGRG	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	494, 590
BsmAI	GTCTC	2 cut(s)	485, 581
BsoBI	CYCGRG	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	348, 676
Bsp1720I	GCTNAGC	2 cut(s)	414, 510
BspACI	CCGC	4 cut(s)	419, 425, 515, 521
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	2 cut(s)	427, 523
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	3 cut(s)	48, 499, 600
BspMI	ACCTGC	1 cut(s)	247
BspOI	GCTAGC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	174, 600
BssMI	GATC	2 cut(s)	348, 676
Bst4CI	ACNGT	2 cut(s)	97, 283
Bst6I	CTCTTC	3 cut(s)	453, 549, 699
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	5 cut(s)	414, 449, 510, 545, 636
BstFNI	CGCG	2 cut(s)	427, 523
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	2 cut(s)	351, 679
BstMAI	GTCTC	2 cut(s)	485, 581
BstMBI	GATC	2 cut(s)	348, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	424, 506, 520, 611
BstUI	CGCG	2 cut(s)	427, 523
BstV1I	GCAGC	4 cut(s)	262, 408, 504, 626
BstV2I	GAAGAC	1 cut(s)	348
BstXI	CCANNNNNNTGG	2 cut(s)	181, 700
BtsIMutI	CAGTG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	1 cut(s)	635
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	284, 336
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	2 cut(s)	346, 680
CviJI	RGCY	8 cut(s)	80, 136, 258, 275, 418, 514, 605, 617
CviKI_1	RGCY	8 cut(s)	80, 136, 258, 275, 418, 514, 605, 617
CviQI	GTAC	2 cut(s)	284, 336
DdeI	CTNAG	5 cut(s)	414, 449, 510, 545, 636
DpnI	GATC	2 cut(s)	350, 678
DpnII	GATC	2 cut(s)	348, 676
Eam1104I	CTCTTC	3 cut(s)	453, 549, 699
EarI	CTCTTC	3 cut(s)	453, 549, 699
Eco47I	GGWCC	1 cut(s)	233
Eco47III	AGCGCT	1 cut(s)	634
Eco57I	CTGAAG	2 cut(s)	183, 360
Eco88I	CYCGRG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	349, 683
FaiI	YATR	6 cut(s)	87, 224, 347, 671, 681, 713
FatI	CATG	2 cut(s)	345, 679
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	8 cut(s)	276, 419, 422, 425, 515, 518, 521, 615
Fsp4HI	GCNGC	8 cut(s)	276, 419, 422, 425, 515, 518, 521, 615
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	8 cut(s)	276, 419, 422, 425, 515, 518, 521, 615
HaeII	RGCGCY	1 cut(s)	636
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	2 cut(s)	349, 683
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HinfI	GANTC	3 cut(s)	191, 429, 525
HphI	GGTGA	3 cut(s)	138, 197, 323
Hpy166II	GTNNAC	2 cut(s)	236, 359
Hpy188I	TCNGA	3 cut(s)	27, 297, 724
Hpy188III	TCNNGA	4 cut(s)	130, 488, 584, 680
Hpy8I	GTNNAC	2 cut(s)	236, 359
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	28, 63, 158
HpyCH4III	ACNGT	2 cut(s)	97, 283
HpyCH4V	TGCA	1 cut(s)	614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	424, 506, 520, 611
HpyF3I	CTNAG	5 cut(s)	414, 449, 510, 545, 636
Hsp92II	CATG	2 cut(s)	349, 683
HspAI	GCGC	1 cut(s)	633
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	348, 676
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	4 cut(s)	262, 408, 504, 626
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	77
MalI	GATC	2 cut(s)	350, 678
MboI	GATC	2 cut(s)	348, 676
MboII	GAAGA	7 cut(s)	93, 200, 353, 418, 470, 566, 716
MluCI	AATT	6 cut(s)	28, 57, 179, 197, 391, 504
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	8 cut(s)	60, 216, 262, 302, 329, 391, 643, 700
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	65, 210, 503
MspA1I	CMGCKG	3 cut(s)	421, 517, 605
MvnI	CGCG	2 cut(s)	427, 523
MwoI	GCNNNNNNNGC	4 cut(s)	424, 506, 520, 611
NdeII	GATC	2 cut(s)	348, 676
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	349, 683
NlaIV	GGNNCC	3 cut(s)	48, 499, 600
PagI	TCATGA	1 cut(s)	679
PaqCI	CACCTGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	191, 429, 525
PkrI	GCNGC	8 cut(s)	277, 420, 423, 426, 516, 519, 522, 616
PspN4I	GGNNCC	3 cut(s)	48, 499, 600
PspPI	GGNCC	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	2 cut(s)	285, 337
RsaNI	GTAC	2 cut(s)	284, 336
SaqAI	TTAA	3 cut(s)	65, 210, 503
SatI	GCNGC	8 cut(s)	276, 419, 422, 425, 515, 518, 521, 615
Sau3AI	GATC	2 cut(s)	348, 676
Sau96I	GGNCC	1 cut(s)	233
SetI	ASST	9 cut(s)	82, 138, 241, 277, 313, 327, 499, 607, 619
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	137, 320
SmoI	CTYRAG	2 cut(s)	137, 320
Sse9I	AATT	6 cut(s)	28, 57, 179, 197, 391, 504
SsiI	CCGC	4 cut(s)	419, 425, 515, 521
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	97, 283
TasI	AATT	6 cut(s)	28, 57, 179, 197, 391, 504
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	4 cut(s)	421, 427, 517, 523
TfiI	GAWTC	3 cut(s)	191, 429, 525
Tru1I	TTAA	3 cut(s)	65, 210, 503
Tru9I	TTAA	3 cut(s)	65, 210, 503
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	4 cut(s)	275, 421, 517, 614
TspDTI	ATGAA	3 cut(s)	93, 389, 696
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	2 cut(s)	28, 197
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.