Rorug01G0298400

Domain of unknown function (DUF3783)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010336
Physical Location & Seq
Forward (+)
41429403 .. 41431116
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0298400.1

Sequence Viewer

Length: 1413 bp
ATGGGAAACAAGCTTCGAGTTGTGATGCTTCCATGGTCTGCCTTTGGCCATTTGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCTAAAGTTCATGTCTCCTTCATATCAACCCCAAGAAACATTCACAGGCTCCCCAAAATCTCACTTGATTTACAACCTTTCATACACCTGGTCCCCATTCCATTTCCTTATTTGGATCCTGTCTTCTTGCCGGAAGGAGCCGAGGCCAGTATCGACGTGCCCTTTGAAAAAACCGAAAACTTACAGATCGTATACGATCTTCTTCAAACACCCATCAAGCATTTCATTGCAGATCAAATGCCGGATTGGATAATTGCCGATTTCGCTGCTCATTGGGTGGTCGAAATTGCCAAAGAGTATGGTGTTCCACTTGCGTACTTCTCAGTTTTCAGTGCTGCAACCAGTGTTTTCTTTGGCCCACTTGAATATCTCATTGGTGCAAACAGAAACTATGCTCTCCCATCACCACAAAGCTTGACATCTCCACGAGAATGGGTCACTTTTCCTTCTTTGGTGGCATTGAAGGAGCATGAAGCCATTTATGTACCTCAAGGGTCTTTCGCAGCAAATAGTACAGGGATAAGCTATACGTCAAGGTTTGCCAAGATCATATCAGCAAGTCAAGTTTTGGCGATTCGTACTTGCAGTGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCATTGGTGTACTTGCTCCAGATCAACCTAGGAAAAGGGACAAGGTGGAAATAAACTCCGATGGGGCTATGTTTGATTGGCTTGATAAGCAAAAACCCAGGTCAATTGTGTTTGTGGGGTTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTTCATGAGATAGCTCATGGGCTGGAGCTTTCAGAATTGCCATTTATTTGGGGACTCAGAAAACCCATTTCAGCTAACAGTGATGTAGATGATTTTCTGCCTTTAGGTTTTGCTGACAGAACATCAGAGAAAGGGCTTGTTTGCTTTGGATGGGTACCCCAAATGGAAATTTTGGGGCACCCATCAATTGGGGGCTCTTTGTTTCATTCTGGATGGGGTTATGTGATTGAGACTCTGCAATTTGGGCATTGCCTTGTTGTATTACCCCTCATTTATGATCAGCCTTTGAATGCAAGGCTTTTAGTAGAGAAGGGTCTGGCTGCTGAAGTGAAGTGCAACGAAGACGGGTCGCTTAGTAGACAGGAAATAGCAAAAACGTTGAGGCTAGCGATGGTGGAAGGGGAAGGAGAGCACTTGAGAAGCAATGCGAGGAAAGCTGCTGCAGTTTTTGGAGATCATAAGCTGCACCAAGACCACTACATCGGTGCATTTGTTGATTATCTTAAAAATAATGTTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3783

Protein Analysis

470

Amino Acids

52.34

Weight (kDa)

6.07

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 279 - 423 1.1e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1042
AccB1I GGYRCC 2 cut(s) 1042, 1065
AccB7I CCANNNNNTGG 1 cut(s) 1076
AccI GTMKAC 2 cut(s) 282, 1246
AclI AACGTT 1 cut(s) 1265
AclWI GGATC 2 cut(s) 200, 213
AcoI YGGCCR 2 cut(s) 46, 84
AcsI RAATTY 1 cut(s) 1056
AcuI CTGAAG 1 cut(s) 1233
AfaI GTAC 7 cut(s) 407, 576, 604, 670, 707, 747, 1044
AfiI CCNNNNNNNGG 1 cut(s) 1076
AgsI TTSAA 7 cut(s) 68, 257, 296, 455, 553, 686, 1177
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 2 cut(s) 177, 833
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
Alw21I GWGCWC 1 cut(s) 1302
Alw26I GTCTC 3 cut(s) 109, 684, 1112
AlwI GGATC 2 cut(s) 200, 213
AoxI GGCC 4 cut(s) 46, 84, 234, 445
ApeKI GCWGC 7 cut(s) 356, 425, 593, 1208, 1325, 1328, 1351
ApoI RAATTY 1 cut(s) 1056
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
Asp700I GAANNNNTTC 1 cut(s) 888
Asp718I GGTACC 1 cut(s) 1042
AspA2I CCTAGG 1 cut(s) 764
AspS9I GGNCC 2 cut(s) 181, 446
AsuHPI GGTGA 1 cut(s) 486
AsuNHI GCTAGC 1 cut(s) 1273
AvaII GGWCC 1 cut(s) 181
AvrII CCTAGG 1 cut(s) 764
BaeGI GKGCMC 2 cut(s) 252, 1068
BalI TGGCCA 2 cut(s) 48, 86
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 1042, 1065
BanII GRGCYC 1 cut(s) 1085
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 2 cut(s) 205, 1236
Bbv12I GWGCWC 1 cut(s) 1302
BbvI GCAGC 7 cut(s) 343, 412, 605, 1195, 1312, 1315, 1338
BccI CCATC 7 cut(s) 311, 499, 791, 1032, 1078, 1095, 1273
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 2 cut(s) 179, 835
BclI TGATCA 1 cut(s) 1165
BcoDI GTCTC 3 cut(s) 109, 684, 1112
BfaI CTAG 2 cut(s) 765, 1274
BfmI CTRYAG 1 cut(s) 1329
BisI GCNGC 7 cut(s) 357, 426, 594, 1209, 1326, 1329, 1352
BlnI CCTAGG 1 cut(s) 764
BlpI GCTNAGC 1 cut(s) 875
BlsI GCNGC 7 cut(s) 358, 427, 595, 1210, 1327, 1330, 1353
Bme1390I CCNGG 2 cut(s) 179, 835
Bme18I GGWCC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 181, 446
BmiI GGNNCC 6 cut(s) 140, 183, 207, 229, 1044, 1067
BmrFI CCNGG 2 cut(s) 179, 835
BmsI GCATC 2 cut(s) 15, 45
BmtI GCTAGC 1 cut(s) 1277
BpiI GAAGAC 2 cut(s) 205, 1236
BpmI CTGGAG 2 cut(s) 738, 932
Bpu1102I GCTNAGC 1 cut(s) 875
BpuEI CTTGAG 2 cut(s) 564, 1324
BsaJI CCNNGG 5 cut(s) 32, 81, 231, 764, 833
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 1 cut(s) 1076
Bse1I ACTGG 4 cut(s) 237, 432, 724, 728
Bse3DI GCAATG 3 cut(s) 315, 1135, 1318
BseBI CCWGG 2 cut(s) 179, 835
BseDI CCNNGG 5 cut(s) 32, 81, 231, 764, 833
BseGI GGATG 2 cut(s) 1043, 1106
BseLI CCNNNNNNNGG 1 cut(s) 1076
BseMI GCAATG 3 cut(s) 315, 1135, 1318
BseMII CTCAG 3 cut(s) 426, 866, 958
BseNI ACTGG 4 cut(s) 237, 432, 724, 728
BseSI GKGCMC 2 cut(s) 252, 1068
BseXI GCAGC 7 cut(s) 343, 412, 605, 1195, 1312, 1315, 1338
BsgI GTGCAG 1 cut(s) 1337
BshFI GGCC 4 cut(s) 48, 86, 236, 447
BshNI GGYRCC 2 cut(s) 1042, 1065
BsiHKAI GWGCWC 1 cut(s) 1302
BsiSI CCGG 2 cut(s) 221, 332
BslFI GGGAC 3 cut(s) 167, 788, 954
BslI CCNNNNNNNGG 1 cut(s) 1076
BsmAI GTCTC 3 cut(s) 109, 684, 1112
BsmFI GGGAC 3 cut(s) 167, 788, 954
BsmI GAATGC 1 cut(s) 1183
BsnI GGCC 4 cut(s) 48, 86, 236, 447
Bsp1286I GDGCHC 4 cut(s) 252, 1068, 1085, 1302
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 8 cut(s) 205, 276, 286, 322, 636, 757, 1165, 1342
Bsp1720I GCTNAGC 1 cut(s) 875
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 4 cut(s) 48, 86, 236, 447
BspCNI CTCAG 3 cut(s) 425, 867, 957
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 6 cut(s) 140, 183, 207, 229, 1044, 1067
BspMAI CTGCAG 1 cut(s) 1333
BspOI GCTAGC 1 cut(s) 1277
BspPI GGATC 2 cut(s) 200, 213
BspT107I GGYRCC 2 cut(s) 1042, 1065
BsrDI GCAATG 3 cut(s) 315, 1135, 1318
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 4 cut(s) 237, 432, 724, 728
BssECI CCNNGG 5 cut(s) 32, 81, 231, 764, 833
BssMI GATC 8 cut(s) 205, 276, 286, 322, 636, 757, 1165, 1342
BssNAI GTATAC 1 cut(s) 283
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 3 cut(s) 32, 81, 764
Bst1107I GTATAC 1 cut(s) 283
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 179, 835
Bst4CI ACNGT 1 cut(s) 968
BstAUI TGTACA 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 1275
BstDEI CTNAG 4 cut(s) 412, 875, 944, 1241
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 1043, 1106
BstKTI GATC 8 cut(s) 208, 279, 289, 325, 639, 760, 1168, 1345
BstMAI GTCTC 3 cut(s) 109, 684, 1112
BstMBI GATC 8 cut(s) 205, 276, 286, 322, 636, 757, 1165, 1342
BstMWI GCNNNNNNNGC 4 cut(s) 353, 823, 1132, 1322
BstNI CCWGG 2 cut(s) 179, 835
BstSCI CCNGG 2 cut(s) 177, 833
BstSFI CTRYAG 1 cut(s) 1329
BstSLI GKGCMC 2 cut(s) 252, 1068
BstV1I GCAGC 7 cut(s) 343, 412, 605, 1195, 1312, 1315, 1338
BstV2I GAAGAC 2 cut(s) 205, 1236
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 3 cut(s) 82, 522, 936
BstYI RGATCY 1 cut(s) 205
BstZ17I GTATAC 1 cut(s) 283
BsuRI GGCC 4 cut(s) 48, 86, 236, 447
BtgI CCRYGG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 1292
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 1043, 1106
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 5 cut(s) 427, 439, 682, 735, 973
Cac8I GCNNGC 1 cut(s) 1275
CciI TCATGA 1 cut(s) 892
Cfr13I GGNCC 2 cut(s) 181, 446
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 7 cut(s) 406, 575, 603, 669, 706, 746, 1043
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 5 cut(s) 33, 101, 560, 893, 905
CviQI GTAC 7 cut(s) 406, 575, 603, 669, 706, 746, 1043
DdeI CTNAG 4 cut(s) 412, 875, 944, 1241
DpnI GATC 8 cut(s) 207, 278, 288, 324, 638, 759, 1167, 1344
DpnII GATC 8 cut(s) 205, 276, 286, 322, 636, 757, 1165, 1342
EaeI YGGCCR 2 cut(s) 46, 84
Eco130I CCWWGG 3 cut(s) 32, 81, 764
Eco24I GRGCYC 1 cut(s) 1085
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 1233
EcoRII CCWGG 2 cut(s) 177, 833
EcoT14I CCWWGG 3 cut(s) 32, 81, 764
EcoT38I GRGCYC 1 cut(s) 1085
ErhI CCWWGG 3 cut(s) 32, 81, 764
FaeI CATG 5 cut(s) 36, 104, 563, 896, 908
FaqI GGGAC 3 cut(s) 167, 788, 954
FatI CATG 5 cut(s) 32, 100, 559, 892, 904
FbaI TGATCA 1 cut(s) 1165
FblI GTMKAC 2 cut(s) 282, 1246
Fnu4HI GCNGC 7 cut(s) 357, 426, 594, 1209, 1326, 1329, 1352
FokI GGATG 2 cut(s) 1050, 1113
FriOI GRGCYC 1 cut(s) 1085
Fsp4HI GCNGC 7 cut(s) 357, 426, 594, 1209, 1326, 1329, 1352
FspBI CTAG 2 cut(s) 765, 1274
GluI GCNGC 7 cut(s) 357, 426, 594, 1209, 1326, 1329, 1352
GsuI CTGGAG 2 cut(s) 738, 932
HaeIII GGCC 4 cut(s) 48, 86, 236, 447
HapII CCGG 2 cut(s) 221, 332
Hin1II CATG 5 cut(s) 36, 104, 563, 896, 908
HindIII AAGCTT 2 cut(s) 11, 502
HinfI GANTC 4 cut(s) 664, 733, 942, 1120
HpaII CCGG 2 cut(s) 221, 332
HphI GGTGA 1 cut(s) 486
Hpy166II GTNNAC 4 cut(s) 283, 706, 746, 1247
Hpy188I TCNGA 4 cut(s) 796, 922, 947, 1015
Hpy188III TCNNGA 3 cut(s) 755, 893, 1098
Hpy8I GTNNAC 4 cut(s) 283, 706, 746, 1247
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 9 cut(s) 70, 118, 218, 546, 547, 680, 1192, 1280, 1286
HpyCH4III ACNGT 1 cut(s) 968
HpyCH4IV ACGT 3 cut(s) 246, 620, 1265
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 823, 1132, 1322
HpyF3I CTNAG 4 cut(s) 412, 875, 944, 1241
HpySE526I ACGT 3 cut(s) 246, 620, 1265
Hsp92II CATG 5 cut(s) 36, 104, 563, 896, 908
KpnI GGTACC 1 cut(s) 1046
Ksp22I TGATCA 1 cut(s) 1165
Kzo9I GATC 8 cut(s) 205, 276, 286, 322, 636, 757, 1165, 1342
LmnI GCTCC 5 cut(s) 144, 227, 556, 757, 913
Lsp1109I GCAGC 7 cut(s) 343, 412, 605, 1195, 1312, 1315, 1338
LweI GCATC 2 cut(s) 15, 45
MabI ACCWGGT 1 cut(s) 177
MaeI CTAG 2 cut(s) 765, 1274
MaeII ACGT 3 cut(s) 246, 620, 1265
MaeIII GTNAC 1 cut(s) 526
MalI GATC 8 cut(s) 207, 278, 288, 324, 638, 759, 1167, 1344
MboI GATC 8 cut(s) 205, 276, 286, 322, 636, 757, 1165, 1342
MboII GAAGA 4 cut(s) 205, 281, 284, 1241
MfeI CAATTG 2 cut(s) 840, 1074
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 4 cut(s) 252, 1068, 1085, 1302
MlsI TGGCCA 2 cut(s) 48, 86
MluCI AATT 9 cut(s) 342, 375, 714, 840, 923, 1056, 1074, 1127, 1408
MluNI TGGCCA 2 cut(s) 48, 86
MlyI GAGTC 2 cut(s) 936, 1114
MnlI CCTC 5 cut(s) 226, 588, 1166, 1263, 1311
Mox20I TGGCCA 2 cut(s) 48, 86
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 2 cut(s) 48, 86
MseI TTAA 2 cut(s) 1392, 1411
MslI CAYNNNNRTG 1 cut(s) 520
Msp20I TGGCCA 2 cut(s) 48, 86
MspI CCGG 2 cut(s) 221, 332
MspR9I CCNGG 2 cut(s) 179, 835
MunI CAATTG 2 cut(s) 840, 1074
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 2 cut(s) 179, 835
MwoI GCNNNNNNNGC 4 cut(s) 353, 823, 1132, 1322
NcoI CCATGG 1 cut(s) 32
NdeII GATC 8 cut(s) 205, 276, 286, 322, 636, 757, 1165, 1342
NheI GCTAGC 1 cut(s) 1273
NlaIII CATG 5 cut(s) 36, 104, 563, 896, 908
NlaIV GGNNCC 6 cut(s) 140, 183, 207, 229, 1044, 1067
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 526
PagI TCATGA 1 cut(s) 892
PctI GAATGC 1 cut(s) 1183
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 2 cut(s) 664, 733
PflMI CCANNNNNTGG 1 cut(s) 1076
PkrI GCNGC 7 cut(s) 358, 427, 595, 1210, 1327, 1330, 1353
PleI GAGTC 2 cut(s) 936, 1114
PpsI GAGTC 2 cut(s) 936, 1114
Psp1406I AACGTT 1 cut(s) 1265
Psp6I CCWGG 2 cut(s) 177, 833
PspGI CCWGG 2 cut(s) 177, 833
PspN4I GGNNCC 6 cut(s) 140, 183, 207, 229, 1044, 1067
PspPI GGNCC 2 cut(s) 181, 446
PstI CTGCAG 1 cut(s) 1333
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 7 cut(s) 407, 576, 604, 670, 707, 747, 1044
RsaNI GTAC 7 cut(s) 406, 575, 603, 669, 706, 746, 1043
RseI CAYNNNNRTG 1 cut(s) 520
SaqAI TTAA 2 cut(s) 1392, 1411
SatI GCNGC 7 cut(s) 357, 426, 594, 1209, 1326, 1329, 1352
Sau3AI GATC 8 cut(s) 205, 276, 286, 322, 636, 757, 1165, 1342
Sau96I GGNCC 2 cut(s) 181, 446
SchI GAGTC 2 cut(s) 936, 1114
ScrFI CCNGG 2 cut(s) 179, 835
SduI GDGCHC 4 cut(s) 252, 1068, 1085, 1302
SexAI ACCWGGT 1 cut(s) 177
SfaNI GCATC 2 cut(s) 15, 45
SfcI CTRYAG 1 cut(s) 1329
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 520
SmlI CTYRAG 2 cut(s) 579, 1303
SmoI CTYRAG 2 cut(s) 579, 1303
Sse9I AATT 9 cut(s) 342, 375, 714, 840, 923, 1056, 1074, 1127, 1408
SspMI CTAG 2 cut(s) 765, 1274
StyD4I CCNGG 2 cut(s) 177, 833
StyI CCWWGG 3 cut(s) 32, 81, 764
TaaI ACNGT 1 cut(s) 968
TaiI ACGT 3 cut(s) 249, 623, 1268
TaqI TCGA 3 cut(s) 16, 243, 372
TasI AATT 9 cut(s) 342, 375, 714, 840, 923, 1056, 1074, 1127, 1408
TatI WGTACW 3 cut(s) 602, 705, 745
TfiI GAWTC 2 cut(s) 664, 733
Tru1I TTAA 2 cut(s) 1392, 1411
Tru9I TTAA 2 cut(s) 1392, 1411
TscAI CASTG 5 cut(s) 427, 439, 682, 735, 973
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 7 cut(s) 356, 425, 593, 1208, 1325, 1328, 1351
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 7 cut(s) 89, 100, 160, 304, 576, 881, 1082
TspRI CASTG 5 cut(s) 427, 439, 682, 735, 973
Van91I CCANNNNNTGG 1 cut(s) 1076
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 1056
XmaJI CCTAGG 1 cut(s) 764
XmiI GTMKAC 2 cut(s) 282, 1246
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 2 cut(s) 765, 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.