Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007589.1

Orthogroup ID

OG0010336

Physical Location & Seq

Genomic Coordinates Reverse (-)

28103 .. 30984

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007589.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggcatctgctcttgccttctctctgaattctcatctgcttttggttcctccttcaatttccttaactcctttgctagctccacatatttcaacagtttcctcatcatcagcaaccaaaacccatcacttgaagctcaaacactcccctagagcgtctgctgaaggagttcccagtgaattgagcgaagattccaagtttgttccacttaatgctgaaagtatgatatttggcccacctgctttgttattattgggctttgaagtggaggaagctgcgacggtacaagattttctgaaacagataggaggtgatttcctcaaggttatttattgtactgaagacatgatcactcgttcactttgggaagcaatgaatacaatccaacccaatttggaggaagtgaagattgctaagccgctgccgcgaatctgtttcttatctggtcttagtggggaagagatgatgatgttgattgatgattttccagagacaggtgccttagtaggactgttgagacttgaaccagctgtttttgcagctcttgttcccaacagcgctgagaaaccgatagaggagttgatagacgagattatggcagatcatgaaatgataaccaagaaaatggaagagggcataggcaaatccgataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3783

Protein Analysis

218

Amino Acids

23.71

Weight (kDa)

4.79

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10405
fragaria_vesca	FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710
malus_domestica	MD01G1102700.v1.1
prunus_persica	Prupe.2G208300_v2.0.a1 Prupe.2G208300_v2.0.a1
pyrus_communis	pycom01g12920
rosa_chinensis	RchiOBHm_Chr1g0362491
rosa_laevigata	RLG00000027643
rosa_multiflora	Rmu_sc0007589.1_g000004 Rmu_sc0007589.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294110
rosa_rugosa	Rorug01G0298400
rosa_samantha	Rh1AG307800 Rh1BG270900 Rh1CG288600 Rh1DG301100
rosa_wichuraiana	Rw1G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	497
AccII	CGCG	1 cut(s)	427
AciI	CCGC	2 cut(s)	419, 425
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	2 cut(s)	183, 360
AfaI	GTAC	2 cut(s)	285, 337
AfeI	AGCGCT	1 cut(s)	559
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	5 cut(s)	57, 93, 133, 263, 524
AluBI	AGCT	5 cut(s)	80, 136, 275, 530, 542
AluI	AGCT	5 cut(s)	80, 136, 275, 530, 542
Alw26I	GTCTC	2 cut(s)	485, 511
Aor51HI	AGCGCT	1 cut(s)	559
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	3 cut(s)	275, 421, 539
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	323
AsuNHI	GCTAGC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	262, 408, 551
BccI	CCATC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	485, 511
BfaI	CTAG	2 cut(s)	77, 150
BfoI	RGCGCY	1 cut(s)	561
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	5 cut(s)	276, 419, 422, 425, 540
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	5 cut(s)	277, 420, 423, 426, 541
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	48, 499
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	3 cut(s)	262, 408, 551
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	485, 511
BsnI	GGCC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	348, 601
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	419, 425
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	48, 499
BspMI	ACCTGC	1 cut(s)	247
BspOI	GCTAGC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	348, 601
Bst4CI	ACNGT	3 cut(s)	97, 283, 513
Bst6I	CTCTTC	2 cut(s)	453, 624
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	4 cut(s)	414, 449, 502, 561
BstFNI	CGCG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	2 cut(s)	351, 604
BstMAI	GTCTC	2 cut(s)	485, 511
BstMBI	GATC	2 cut(s)	348, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 536
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	3 cut(s)	262, 408, 551
BstV2I	GAAGAC	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	625
BsuRI	GGCC	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	284, 336
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	2 cut(s)	346, 605
CviJI	RGCY	8 cut(s)	80, 136, 234, 258, 275, 418, 530, 542
CviKI_1	RGCY	8 cut(s)	80, 136, 234, 258, 275, 418, 530, 542
CviQI	GTAC	2 cut(s)	284, 336
DdeI	CTNAG	4 cut(s)	414, 449, 502, 561
DpnI	GATC	2 cut(s)	350, 603
DpnII	GATC	2 cut(s)	348, 601
Eam1104I	CTCTTC	2 cut(s)	453, 624
EarI	CTCTTC	2 cut(s)	453, 624
Eco47III	AGCGCT	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	183, 360
EcoRI	GAATTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	349, 608
FaiI	YATR	6 cut(s)	87, 224, 347, 596, 606, 638
FatI	CATG	2 cut(s)	345, 604
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	5 cut(s)	276, 419, 422, 425, 540
Fsp4HI	GCNGC	5 cut(s)	276, 419, 422, 425, 540
FspBI	CTAG	2 cut(s)	77, 150
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	5 cut(s)	276, 419, 422, 425, 540
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	234
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	2 cut(s)	349, 608
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HinfI	GANTC	2 cut(s)	191, 429
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	27, 297, 649
Hpy188III	TCNNGA	2 cut(s)	488, 605
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	28, 63, 158
HpyCH4III	ACNGT	3 cut(s)	97, 283, 513
HpyCH4V	TGCA	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 536
HpyF3I	CTNAG	4 cut(s)	414, 449, 502, 561
Hsp92II	CATG	2 cut(s)	349, 608
HspAI	GCGC	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	348, 601
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	6 cut(s)	187, 252, 429, 480, 501, 540
Lsp1109I	GCAGC	3 cut(s)	262, 408, 551
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	77, 150
MalI	GATC	2 cut(s)	350, 603
MboI	GATC	2 cut(s)	348, 601
MboII	GAAGA	5 cut(s)	200, 353, 418, 470, 641
MluCI	AATT	4 cut(s)	28, 57, 179, 391
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	8 cut(s)	60, 112, 262, 302, 329, 391, 568, 625
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	65, 210
MspA1I	CMGCKG	2 cut(s)	421, 530
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	2 cut(s)	424, 536
NdeII	GATC	2 cut(s)	348, 601
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	349, 608
NlaIV	GGNNCC	2 cut(s)	48, 499
PagI	TCATGA	1 cut(s)	604
PaqCI	CACCTGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	191, 429
PkrI	GCNGC	5 cut(s)	277, 420, 423, 426, 541
PspN4I	GGNNCC	2 cut(s)	48, 499
PspPI	GGNCC	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	285, 337
RsaNI	GTAC	2 cut(s)	284, 336
SaqAI	TTAA	2 cut(s)	65, 210
SatI	GCNGC	5 cut(s)	276, 419, 422, 425, 540
Sau3AI	GATC	2 cut(s)	348, 601
Sau96I	GGNCC	1 cut(s)	233
SetI	ASST	9 cut(s)	82, 138, 241, 277, 313, 327, 499, 532, 544
SfaNI	GCATC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	4 cut(s)	28, 57, 179, 391
SsiI	CCGC	2 cut(s)	419, 425
SspMI	CTAG	2 cut(s)	77, 150
TaaI	ACNGT	3 cut(s)	97, 283, 513
TasI	AATT	4 cut(s)	28, 57, 179, 391
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	2 cut(s)	421, 427
TfiI	GAWTC	2 cut(s)	191, 429
Tru1I	TTAA	2 cut(s)	65, 210
Tru9I	TTAA	2 cut(s)	65, 210
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	3 cut(s)	275, 421, 539
TspDTI	ATGAA	2 cut(s)	389, 621
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	77, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.