Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010336

Physical Location & Seq

Genomic Coordinates Forward (+)

13526675 .. 13529251

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCAGCTTCTGCTCTTGCTTTCTCTCTGAAAACTTCACTCAACAATTCTCCTCTGCTTTTTATCCCTTCAATTTCCTCAAATCCTCTGCTGCCTCCAAAGATTTCAACACGTTCTTCTTCTTCGTCGTCGGAAAATTACAGAAGCCATCAGTTGAAGCTCATCAAGAGCACCCCAAGAGCCTCTTCTGAAAGAGAAGGAGTTCCTAGTGAGTTGATTGAAGATTCAAAATTCGTTCCTCTAAATGCAGATGAAATGATATTTGGTCCACCTGCTTTGTTATTGTTGGGGTTTGAAGTGGAGGAAGCTGAGAAGATCCAACAGTTTTTGAAACAGCTAGACGGAGAATTCCTCAAGGTTATTTATTGTACTGAAGACATGATTAGTCGTTCACTTTGGGACGCGATGAATACAAGCCAGCCGAATTTGGAAGCATTACAGATTGCTAAGCCACTACCACGAATCTGTTTCTTCTCTGGTCTGAGTGGGGAGGAGATGATGGTGTTCATTGATTCTTTCCCAGAATCAGGACTCGAACCAGCCATTTTTGCGGCTCTTGTTCCCAACAGTGCCGATAAACCTCTGGCGGAGTTGATAGAAGAGATCGTGGGGGACCATGAAATGCTAACTGCGAAAGAAAAGGAAAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3783

Protein Analysis

218

Amino Acids

23.85

Weight (kDa)

4.62

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10405
fragaria_vesca	FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710 FvH4_7g18710
malus_domestica	MD01G1102700.v1.1
prunus_persica	Prupe.2G208300_v2.0.a1 Prupe.2G208300_v2.0.a1
pyrus_communis	pycom01g12920
rosa_chinensis	RchiOBHm_Chr1g0362491
rosa_laevigata	RLG00000027643
rosa_multiflora	Rmu_sc0007589.1_g000004 Rmu_sc0007589.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294110
rosa_rugosa	Rorug01G0298400
rosa_samantha	Rh1AG307800 Rh1BG270900 Rh1CG288600 Rh1DG301100
rosa_wichuraiana	Rw1G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	1 cut(s)	280
AccII	CGCG	1 cut(s)	404
AciI	CCGC	2 cut(s)	551, 587
AclWI	GGATC	1 cut(s)	310
AcsI	RAATTY	3 cut(s)	230, 347, 424
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	110
AgsI	TTSAA	7 cut(s)	72, 108, 157, 221, 228, 296, 331
AjuI	GAANNNNNNNTTGG	4 cut(s)	169, 201, 246, 278
AluBI	AGCT	4 cut(s)	8, 160, 308, 337
AluI	AGCT	4 cut(s)	8, 160, 308, 337
Alw21I	GWGCWC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	5, 91
ApoI	RAATTY	3 cut(s)	230, 347, 424
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	266, 613
AvaII	GGWCC	2 cut(s)	266, 613
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	17, 78
BccI	CCATC	2 cut(s)	156, 493
BfaI	CTAG	2 cut(s)	207, 338
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	3 cut(s)	6, 92, 552
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	3 cut(s)	7, 93, 553
Bme18I	GGWCC	2 cut(s)	266, 613
BmgT120I	GGNCC	2 cut(s)	266, 613
BmiI	GGNNCC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	381
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMII	CTCAG	2 cut(s)	300, 473
BseRI	GAGGAG	2 cut(s)	42, 506
BseXI	GCAGC	2 cut(s)	17, 78
Bsh1236I	CGCG	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	173
BslFI	GGGAC	2 cut(s)	413, 626
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	413, 626
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	315, 603
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	2 cut(s)	551, 587
BspCNI	CTCAG	2 cut(s)	301, 474
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	614
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	310
BssMI	GATC	2 cut(s)	315, 603
Bst4CI	ACNGT	2 cut(s)	324, 569
Bst6I	CTCTTC	2 cut(s)	190, 594
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	3 cut(s)	309, 447, 482
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	2 cut(s)	318, 606
BstMBI	GATC	2 cut(s)	315, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 548
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	17, 78
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	419
BtsIMutI	CAGTG	1 cut(s)	574
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	419
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	266, 613
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	2 cut(s)	379, 617
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	3 cut(s)	309, 447, 482
DpnI	GATC	2 cut(s)	317, 605
DpnII	GATC	2 cut(s)	315, 603
Eam1104I	CTCTTC	2 cut(s)	190, 594
EarI	CTCTTC	2 cut(s)	190, 594
EciI	GGCGGA	1 cut(s)	602
Eco47I	GGWCC	2 cut(s)	266, 613
Eco57I	CTGAAG	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	652
FaeI	CATG	2 cut(s)	382, 620
FaiI	YATR	3 cut(s)	380, 618, 652
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	2 cut(s)	413, 626
FatI	CATG	2 cut(s)	378, 616
Fnu4HI	GCNGC	3 cut(s)	6, 92, 552
Fsp4HI	GCNGC	3 cut(s)	6, 92, 552
FspBI	CTAG	2 cut(s)	207, 338
GluI	GCNGC	3 cut(s)	6, 92, 552
HgaI	GACGC	1 cut(s)	410
Hin1II	CATG	2 cut(s)	382, 620
HinfI	GANTC	5 cut(s)	224, 462, 512, 524, 531
Hpy166II	GTNNAC	2 cut(s)	269, 392
Hpy188I	TCNGA	4 cut(s)	30, 133, 190, 483
Hpy188III	TCNNGA	2 cut(s)	166, 528
Hpy8I	GTNNAC	2 cut(s)	269, 392
Hpy99I	CGWCG	2 cut(s)	130, 133
HpyAV	CCTTC	2 cut(s)	78, 191
HpyCH4III	ACNGT	2 cut(s)	324, 569
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	248, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 548
HpyF3I	CTNAG	3 cut(s)	309, 447, 482
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	382, 620
Kzo9I	GATC	2 cut(s)	315, 603
LpnPI	CCDG	7 cut(s)	285, 431, 462, 513, 534, 552, 569
Lsp1109I	GCAGC	2 cut(s)	17, 78
MaeI	CTAG	2 cut(s)	207, 338
MaeII	ACGT	1 cut(s)	112
MalI	GATC	2 cut(s)	317, 605
MboI	GATC	2 cut(s)	315, 603
MboII	GAAGA	9 cut(s)	108, 111, 114, 177, 233, 325, 386, 463, 611
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	6 cut(s)	46, 72, 136, 230, 347, 424
MlyI	GAGTC	1 cut(s)	525
MmeI	TCCRAC	2 cut(s)	111, 343
Mph1103I	ATGCAT	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	201
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	11, 548
NdeII	GATC	2 cut(s)	315, 603
NlaIII	CATG	2 cut(s)	382, 620
NlaIV	GGNNCC	1 cut(s)	614
NsiI	ATGCAT	1 cut(s)	652
PaqCI	CACCTGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	4 cut(s)	224, 462, 512, 524
PkrI	GCNGC	3 cut(s)	7, 93, 553
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	614
PspPI	GGNCC	2 cut(s)	266, 613
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SatI	GCNGC	3 cut(s)	6, 92, 552
Sau3AI	GATC	2 cut(s)	315, 603
Sau96I	GGNCC	2 cut(s)	266, 613
SchI	GAGTC	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	8 cut(s)	10, 115, 162, 274, 310, 339, 360, 583
SinI	GGWCC	2 cut(s)	266, 613
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	6 cut(s)	46, 72, 136, 230, 347, 424
SsiI	CCGC	2 cut(s)	551, 587
SspMI	CTAG	2 cut(s)	207, 338
TaaI	ACNGT	2 cut(s)	324, 569
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	534
TasI	AATT	6 cut(s)	46, 72, 136, 230, 347, 424
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	4 cut(s)	224, 462, 512, 524
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	2 cut(s)	5, 91
TspDTI	ATGAA	4 cut(s)	267, 422, 496, 633
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	266, 613
XapI	RAATTY	3 cut(s)	230, 347, 424
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	2 cut(s)	207, 338
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.