Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006835

Physical Location & Seq

Genomic Coordinates Reverse (-)

3793731 .. 3806743

Gene Structure 13013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11964.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5691 bp

ATGGTTGTACCGCAGAAGAAATTTGCTAATGGAAAACGTAATGATTCTACAAAGTCCTTTAAACCAATGAAGAAACCGTTTAAGAAGACCAAGGACGATGTAGCTGCTAGGTCTGAAGCCATGGCTCTTCAGCTCGAAGATGTTCCCGACTTTCCTCGAGGTGGAGGTACTTCTCTGAGTAAAAAAGAGCGTGAGAAACTTTATGAAGAAGTCGATGCTGAGTTTGACGCTGATGAGCGTGTTTCTAAGAAGAGTAAAGGGGGTAAGTCTAAAAAGAGAATCCCTAGCGATTTAGACGACTTGGGTTTGCTTTTTGGCGGCGGCCTTCATGGAAAACGGCCAAGATATGCCAATAAGATTACCACTAAGAATATTTCCCCAGGAATGAAACTTTTGGGAGTTGTTACTGAAGTAAACCAGAAGGATATTGTAATTAGTCTTCCAGGGGGCTTACGCGGATTAGTTCGTGCAAGCGAGGTATCAGATTTTACAGATCGTGGGATTGAGGACGATGAAAATGAACTCCTTGGAGACATTTTTTCTGTGGGTCAGCTTGTTCCCTGCATTGTATTGGAGTTAGATGATGATAAGAAGGAGGCGGGCAAAAGGAAAATATGGCTTTCATTGCGACTTTCTTTGTTGCACAAGGGATTCAGTTTTGATTCCTTTCAACTAGGGATGGTGTTCTCTGCAAACGTGAAAAGCATCGAAGACCATGGTTCTATCCTTCATTTTGGATTACCTTCTATCACAGGATTTATCGAAATAAGCGACGATGGAAACCAGGAGTCAGGAATGAAGACTGGGCAGCTTATTCAGGGTGTGGTTACAAAGATCGATAGAGACCGTAAAATTGTTCATCTTAGTTCTGACCCAGATTCAGTGGCAAAGTGTCTGACCAAGGATCTTAGTGGCATGTCGTTTGATCTTCTCATCCCAGGAATGATGGTTAATGCTCGCGTGCAATCAGTCCTCGAGAATGGGATACTGTTTGATTTTCTTACGTACTTTAATGGAACGGTTGATCTCTTCCACCTAAAAAATCCATTATCTAACAAAAGCTGGAAAGATGAGTATAATCAGAATAAGACGGTTAATGCTAGAATATTGTTTATCGATCCATCATCTCGAGCTGTTGGTTTGACATTGAGCCCTCATGTTGTTTGTAACAAGGCTCCTCCATTGCATGTCTTTAGCGGAGACATATTCGACGAAGCAAAAGTAGTTCGTATTGATAAATCAGGCCTTCTTCTGGAACTTCCCTCTAAGCCCACACCAACTCCAGCATACGTTAGCTTTAAGGAAGGAAATCACATCCGTGTTCGAGTACTCGGCCTTAAGCAGATGGAGGGGTTGGCCGTAGGGACTTTAAAGGAAAGCGCCTTTGAAGGTCCAGTTTTCACCCACTCTGATGTCAAGCCTGGTATGGTGACAAAGGCAAAAGTCATATCTGTTGATACATTTGGTGCCATTGTCCAATTTTCGGGTGGTCTCAAAGCAATGTGCCCACTTCGGCATATGTCTGAGTTTGAAGTTACGAAGCCTAGGAAAAAGTTCAAGGTTGGAGCTGAATTAGTATTCCGTGTGCTTGGCTGCAAATCAAAGAGAATAACTGTTACCTACAAAAAAACACTTGTGAAGTCTAAACTTCCAATTTTGAGTTCTTACACTGATGCAACTGAAGGGCTAGTGACGCATGGCTGGATAACAAAGATCGAAAAGCATGGATGCTTTGTTCGCTTCTATAATGGAGTGCAAGGATTTGTTCCCAGATTTGAACTTGGTTTAGAGCCTGGAAGTGATCCAGATTCAGTGTTTCATGTTGGGGAGGTTGTCAAATGTAGAGTAACTAGTGCAGTTCATGGTACCCAAAGGATCACCCTTAACGATTCGATCAAGTTAGGTAGCATTGTATCAGGGATAATTGATACTATAACTAGTCAGGCAGTCATTGTCCGTGTTAAATCCAAAAGTGTTGTCAAGGGTACAATTTCTGCTGAACATTTAGCTGATCATCATGAGCAAGCAAAATTAATAATGTCACTTTTAAGACCTGGATATGAGCTTGATAAGCTGCTGGTACTAGACATTGAAGGCAACAATATGGCTCTCTCTTCAAAATATTCTCTCATTAAGTTAGCTGAAGAGCTTCCTTCGGATTTTAATCAGCTCCAGCCAAACTCAGTGGTTCATGGTTATGTTTGTAACTTGATTGAAAATGGCTGTTTTGTCCGTTTTCTTGGTCGGTTGACTGGTTTCGCCCCAAGAAGCAAGGCAATTGACGACCCCAAGGCAGATGTGTCAGAATCCTTCTTTGTTGGACAATCAGTTCGGGCTAATATAGTTGATGTCAATCAAGAAAAAAGTAGGATAACTCTTTCATTGAAACAGTCATCTTGCGCATCTGTAGATGCTTCTTTTGTCCAAGAGTACTTCCTCATGGATGAGAAGATATCGGACCTGCAATCATCTGATATTACTAAAAGTGACTGTAGCTGGGTTGAGAAATTCTCAATTGGGAGTTTGATCAAGGGAACCATACAGGAACAAAATGATCTTGGTGTGGTGGTGAATTTTGACAATATTAATAACGTCCTTGGTTTTATACCTCAGCATCATATGGGTGGAGCTACTTTGGTACCCGGTTCTGTTGTCAATGCAGTTGTTCTTGATATATCTAGGGCAGAGAGACTAGTTGATTTGTCTTTGAGGCCTGAGCTCTTGAACAACTTAACCAAAGAGGTGTCCAACAGTTCAAAAAAGAAACGTAAAAGAGGAATCTCCAAGGAACTTGAAGTCCACCAGAGGGTCAGTGCTGTTGTAGAGATTGTGAAGGAGCAACACTTGGTTTTGTCGATTCCAGAGCATGGTTACACTATAGGATATGCATCAGTATCAGACTATAACACTCAGAAGTTGCCAGTGAAACAATTTTCCACTGGACAAAGTGTTGTTGCTTCTGTTAAGGCTGTGCAAAACCCTTTAACGTCTGGGAGGTTGCTTTTACTTCTTGACTCTGTTTCCGGCACTTCTGAGACTTCCCGTTCTAAGAGGGCAAAGAAGAAATCCAGCTGTGAAGTTGGTTCTGTTGTCCACGCCGAGATTACTGAAATAAAGCCTTTTGAACTTAGAGTAAACTTTGGCAACAGTTTCCGAGGGAGAATCCACATAACTGAGGTTCTTGTAAATGATGCGAGTACAAGTGATGAACCTTTTGCCAAATTCAGAGTTGGGCAATCAATTTCTGCAAGGGTTGTTGCAAAGCCGTGTCATACTGATATTAAAAAGACTCAACTTTGGGAGCTTTCTGTAAAGCCTGCAATGCTTAAAGATTCCAGTGAGTTTAATGACACACAAGAGAGTGAACAACTTGAGTTTGCTGCTGGACAATGTGTCATTGGATATGTCTACAAAGTGGATAAGGAATGGGTTTGGTTAGCAGTATCTCGCAACGTGACAGCACGCATATTCATATTAGACACATCATGCAAAGCTCATGAACTTGAAGAGTTTGAAAGGCGTTTTCCCATCGGTAAAGCTGTTTCAGGCTATGTTTTGACGTACAATAAAGAGAAAAAAACATTACGGTTGGTTCAGCGTCCACTACTGTTTATCCACAAAAGCATTGCCAATGGTGGAGGCAGCAAAACGGATAAACCAGACAGTAGCATTCCTGGTGATGATGATACTCTATTTATTCATGAAGGAGACATTCTGGGTGGAAGAATTTCTAAGATACTTCCTGGTGTTGGTGGACTTCGTGTGCAATTAGGTCCTTATGTATTCGGGAGAGTTCATTTTACTGAAATCAATGATTCATGGGTCCCTGATCCATTAGATGGTTTTCGTGAAGGCCAGTTTGTCAAATGTAAGGTCTTAGAAATCAGCAGTTCTAGTAAAGGGACTTGGCAAATTGAACTGTCATTACGGACCTCACTAGATGGCATGAGTTCTGCTGACCATCTCTCAGAAGATTTGAAGAATAATGATAATGTTTGTAAGCGTTTTGAGAGGATTGAAGATCTTTCGCCTGATATGGGCGTCCAGGGTTATGTCAAAAATACGATGTCGAAAGGTTGTTTTATTATACTTTCAAGGACAGTGGAGGCAAAAGTTCGACTGTCAAATTTATGTGATACGTTTGTTAAGGAACCCGAAAAGGAATTTCCAGTAGGAAAACTTGTGACTGGCAGGGTTTTAAATGTGGAGCCTTTATCCAAGCGGATAGAAGTCACTTTGAAGACAGTAAATGCTGGTGGGCGGCCAAAATCTGAATCTTATGACTTGAAGAAACTCCATGTTGGAGATATGATTTCTGGGAGAATCAGACGTGTGGAGCCCTTTGGCTTATTCATTGACATTGATCAAACTGGCATGGTTGGATTATGTCACATATCACAGCTTTCTGATGATCGTATGGAGAATGTACAAGCCAGATATAAGGCTGGGGAGAGCGTCCGCGCAAAGATTTTGAAGCTGGACGAGGAAAAGAAGCGTATATCACTCGGAATGAAGAGTTCCTATCTTATGAATGGTGATGATGACAAGGCACAACCACTTTCCGAAGACAACACAAGCATGGAATGTGATCCAATCAATGATCCGAAGTCGGAAGTTCTTGCAGCAGTCGATGATTTTGGGTTCCAGGAAACAAGCGGTGGAACTTCTCTGGTTCTTGCCCAAGTAGAATCAAGGGCTTCTATCCCTCCGCTTGAGGTTGACCTTGATGACATTGAGGAGACGGACTTTGACAGCAGCCAGAATCAGGAGAAACTACTGGGAGCCAATAAAGATGAAAAGAGCAAGAGAAGGGAAAAGCAAAAAGACAAAGAGGAAAGAGAGAAGAAAATACAAGCTGCTGAAGGAAGATTGCTGGAGCATCATGCACCTGAGAATGCTGATGAATTTGAGAAATTGGTTAGAAGCTCTCCAAACAGCAGCTTTGTCTGGATAAAATATATGGCGTTCATGCTCAGCTTGGCTGATATTGAGAAAGCCAGGTCTATTGCTGAGAGGGCCTTGAGGACTATAAATATTCGTGAGGAAGAAGAGAAGCTAAACATATGGGTTGCTTACTTCAATTTGGAAAATGAACATGGAAATCCACCAGAGGAATCTGTTAAGAAAGTGTTTGAAAGGGCCCGTCAATACTGTGACCCAAAGAAAGTTTACCTCGCACTCTTGGGCGTGTACGAGAGAACAGAGCAATATAAATTGGCTGATAAGCTGCTTGATGAGATGATTAAAAAGTTCAAGCAATCTTGCAAGATTTGGTTAAGGAAAATACAAAGTTCTCTGAAACAAAACGAGGAAGCCATACAATCCGTTGTGAATCGTGCCTTGCTATGTCTTCCCCGCCATAAGCACATAAAGTTCATATCACAGACTGCCATCCTTGAGTTCAAATGTGGAGTTGCGGATAGAGGGAGATCACTGTTTGAAGGTGTTCTTAGGGAATACCCAAAAAGAACAGACTTGTGGAGCGTTTATCTTGACCAAGAGATCCGGCTTGGAGAAGATGATGTAATTAGATCTTTATTCGAGAGAGCCATTAGCTTGAGCTTGCCCCCCAAGAAGATGAAGTTTTTGTTCAAGAAGTTCTTGGAATATGAGAAATCTGTTGGTGACGAGGAGAGAGTCGAATACGTGAAACAGAGGGCGATGGAGTATGCAAACAGTACCTTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0000462 GO:0000466 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1 Suf

Protein Analysis

1896

Amino Acids

211.6

Weight (kDa)

8.45

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1_RRP5	PF23459	126 - 199	4e-09	RRP5 S1 domain
S1_RRP5	PF23459	313 - 383	5.4e-08	RRP5 S1 domain
OB_RRP5_4th	PF24685	392 - 467	3.8e-23	RRP5 OB-fold domain
S1	PF00575	472 - 536	1.7e-07	S1 RNA binding domain
S1	PF00575	561 - 618	1.2e-07	S1 RNA binding domain
S1_RRP5	PF23459	724 - 795	6e-08	RRP5 S1 domain
S1	PF00575	725 - 796	2.6e-06	S1 RNA binding domain
OB_RRP5	PF24682	919 - 1006	5.3e-35	RRP5 OB-fold domain
S1_RRP5	PF23459	1342 - 1411	4.2e-07	RRP5 S1 domain
S1	PF00575	1432 - 1505	5.2e-17	S1 RNA binding domain
HAT_Syf1_CNRKL1_N	PF23233	1613 - 1716	1.5e-06	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	1645 - 1890	2.8e-09	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_PRP39_C	PF23241	1649 - 1763	5.6e-06	PRP39 C-terminal HAT repeat
Suf	PF05843	1795 - 1891	1.6e-10	Suppressor of forked protein (Suf)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11964 AT3G11964
fragaria_vesca	FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470
malus_domestica	MD12G1051100.v1.1
prunus_persica	Prupe.7G085700_v2.0.a1 Prupe.7G085700_v2.0.a1
pyrus_communis	pycom12g04550
rosa_chinensis	RchiOBHm_Chr3g0478661
rosa_laevigata	RLG00000023635
rosa_multiflora	Rmu_sc0002454.1_g000002 Rmu_sc0023704.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403220
rosa_rugosa	Rorug03G0166800 Rorug03G0166800 Rorug03G0166900
rosa_samantha	Rh3AG219000 Rh3BG250700 Rh3CG247500 Rh3DG243800
rosa_wichuraiana	Rw3G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	156
Acc16I	TGCGCA	1 cut(s)	2401
Acc36I	ACCTGC	1 cut(s)	2469
Acc65I	GGTACC	2 cut(s)	1865, 2638
AccB1I	GGYRCC	3 cut(s)	1466, 1865, 2638
AccB7I	CCANNNNNTGG	2 cut(s)	2867, 3839
AccI	GTMKAC	1 cut(s)	3408
AccII	CGCG	3 cut(s)	456, 960, 4461
AclWI	GGATC	8 cut(s)	912, 1112, 1796, 1883, 3824, 4583, 4595, 5497
AcoI	YGGCCR	3 cut(s)	338, 1356, 4262
AcsI	RAATTY	8 cut(s)	20, 2507, 2572, 3221, 3726, 4126, 4163, 4904
AcuI	CTGAAG	6 cut(s)	113, 135, 429, 1701, 2163, 4881
AcyI	GRCGYC	1 cut(s)	4041
AfiI	CCNNNNNNNGG	9 cut(s)	161, 1252, 1483, 2806, 2867, 3749, 3839, 4037, 4765
AflII	CTTAAG	1 cut(s)	1337
AflIII	ACRYGT	1 cut(s)	4330
AhdI	GACNNNNNGTC	1 cut(s)	3392
AhlI	ACTAGT	3 cut(s)	1850, 1937, 2692
AjiI	CACGTC	1 cut(s)	4331
AjuI	GAANNNNNNNTTGG	2 cut(s)	1645, 1677
AleI	CACNNNNGTG	1 cut(s)	1317
AloI	GAACNNNNNNTCC	6 cut(s)	1719, 1751, 2313, 2345, 2781, 2813
Alw21I	GWGCWC	1 cut(s)	2721
Alw26I	GTCTC	8 cut(s)	525, 837, 1194, 1496, 2683, 3029, 3702, 4733
AlwI	GGATC	8 cut(s)	912, 1112, 1796, 1883, 3824, 4583, 4595, 5497
Ama87I	CYCGRG	3 cut(s)	156, 974, 1128
ApaI	GGGCCC	1 cut(s)	5143
ApoI	RAATTY	8 cut(s)	20, 2507, 2572, 3221, 3726, 4126, 4163, 4904
ArsI	GACNNNNNNTTYG	6 cut(s)	1962, 1994, 2313, 2345, 3858, 3890
AseI	ATTAAT	2 cut(s)	2033, 2586
Asp700I	GAANNNNTTC	5 cut(s)	141, 1553, 2148, 3727, 5445
Asp718I	GGTACC	2 cut(s)	1865, 2638
AspA2I	CCTAGG	1 cut(s)	1544
AspLEI	GCGC	3 cut(s)	1382, 2402, 4463
AspS9I	GGNCC	8 cut(s)	1391, 2458, 3773, 3823, 3930, 5016, 5139, 5140
AsuC2I	CCSGG	1 cut(s)	2643
AsuHPI	GGTGA	7 cut(s)	1393, 1441, 1870, 2581, 3689, 4547, 5636
AvaI	CYCGRG	3 cut(s)	156, 974, 1128
AvaII	GGWCC	5 cut(s)	1391, 2458, 3773, 3823, 3930
AvrII	CCTAGG	1 cut(s)	1544
BaeGI	GKGCMC	2 cut(s)	1508, 5143
BaeI	ACNNNNGTAYC	4 cut(s)	2622, 2655, 4128, 4161
BanI	GGYRCC	3 cut(s)	1466, 1865, 2638
BanII	GRGCYC	4 cut(s)	1154, 2721, 4341, 5143
BarI	GAAGNNNNNNTAC	2 cut(s)	423, 455
BbsI	GAAGAC	7 cut(s)	92, 431, 717, 806, 4247, 4572, 5342
Bbv12I	GWGCWC	1 cut(s)	2721
BbvCI	CCTCAGC	1 cut(s)	2610
BceAI	ACGGC	3 cut(s)	353, 1343, 3250
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciVI	GTATCC	1 cut(s)	978
BclI	TGATCA	3 cut(s)	2011, 2526, 4363
BcnI	CCSGG	1 cut(s)	2643
BcoDI	GTCTC	8 cut(s)	525, 837, 1194, 1496, 2683, 3029, 3702, 4733
BcuI	ACTAGT	3 cut(s)	1850, 1937, 2692
BfmI	CTRYAG	3 cut(s)	2406, 2491, 2877
BfoI	RGCGCY	1 cut(s)	1383
BfrI	CTTAAG	1 cut(s)	1337
BfuAI	ACCTGC	1 cut(s)	2469
BfuI	GTATCC	1 cut(s)	978
BglII	AGATCT	2 cut(s)	4021, 5531
BlnI	CCTAGG	1 cut(s)	1544
BlpI	GCTNAGC	1 cut(s)	4973
BmcAI	AGTACT	2 cut(s)	1329, 2432
Bme18I	GGWCC	5 cut(s)	1391, 2458, 3773, 3823, 3930
BmeRI	GACNNNNNGTC	1 cut(s)	3392
BmeT110I	CYCGRG	3 cut(s)	156, 974, 1128
BmgBI	CACGTC	1 cut(s)	4331
BmgT120I	GGNCC	8 cut(s)	1391, 2458, 3773, 3823, 3930, 5016, 5139, 5140
BmrI	ACTGGG	2 cut(s)	813, 4787
BmuI	ACTGGG	2 cut(s)	813, 4787
BpiI	GAAGAC	7 cut(s)	92, 431, 717, 806, 4247, 4572, 5342
BplI	GAGNNNNNCTC	2 cut(s)	2495, 2527
BpmI	CTGGAG	3 cut(s)	1266, 2156, 4895
Bpu10I	CCTNAGC	2 cut(s)	2610, 2715
Bpu1102I	GCTNAGC	1 cut(s)	4973
BpuEI	CTTGAG	5 cut(s)	3392, 4733, 5041, 5417, 5578
BpuMI	CCSGG	1 cut(s)	2643
Bsa29I	ATCGAT	2 cut(s)	837, 1116
BsaAI	YACGTR	2 cut(s)	1005, 5647
BsaBI	GATNNNNATC	3 cut(s)	2163, 2352, 2887
BsaHI	GRCGYC	1 cut(s)	4041
BsaI	GGTCTC	2 cut(s)	837, 1496
BsaXI	ACNNNNNCTCC	2 cut(s)	1264, 1294
Bsc4I	CCNNNNNNNGG	9 cut(s)	161, 1252, 1483, 2806, 2867, 3749, 3839, 4037, 4765
Bse3DI	GCAATG	5 cut(s)	623, 1181, 1506, 3327, 3624
Bse8I	GATNNNNATC	3 cut(s)	2163, 2352, 2887
BseCI	ATCGAT	2 cut(s)	837, 1116
BseGI	GGATG	6 cut(s)	684, 933, 1314, 1733, 2449, 5391
BseJI	GATNNNNATC	3 cut(s)	2163, 2352, 2887
BseLI	CCNNNNNNNGG	9 cut(s)	161, 1252, 1483, 2806, 2867, 3749, 3839, 4037, 4765
BseMI	GCAATG	5 cut(s)	623, 1181, 1506, 3327, 3624
BseRI	GAGGAG	3 cut(s)	1167, 4751, 5645
BseSI	GKGCMC	2 cut(s)	1508, 5143
BseYI	CCCAGC	2 cut(s)	2496, 4445
BsgI	GTGCAG	1 cut(s)	1875
Bsh1236I	CGCG	3 cut(s)	456, 960, 4461
BshNI	GGYRCC	3 cut(s)	1466, 1865, 2638
BshVI	ATCGAT	2 cut(s)	837, 1116
BsiHKAI	GWGCWC	1 cut(s)	2721
BsiHKCI	CYCGRG	3 cut(s)	156, 974, 1128
BsiSI	CCGG	3 cut(s)	2643, 3024, 5506
BslFI	GGGAC	3 cut(s)	1378, 3809, 3916
BslI	CCNNNNNNNGG	9 cut(s)	161, 1252, 1483, 2806, 2867, 3749, 3839, 4037, 4765
BsmAI	GTCTC	8 cut(s)	525, 837, 1194, 1496, 2683, 3029, 3702, 4733
BsmBI	CGTCTC	1 cut(s)	4733
BsmFI	GGGAC	3 cut(s)	1378, 3809, 3916
BsmI	GAATGC	2 cut(s)	3669, 4900
Bso31I	GGTCTC	2 cut(s)	837, 1496
BsoBI	CYCGRG	3 cut(s)	156, 974, 1128
Bsp120I	GGGCCC	1 cut(s)	5139
Bsp1286I	GDGCHC	5 cut(s)	1154, 1508, 2721, 4341, 5143
Bsp1407I	TGTACA	1 cut(s)	4426
Bsp1720I	GCTNAGC	1 cut(s)	4973
Bsp19I	CCATGG	2 cut(s)	120, 715
BspDI	ATCGAT	2 cut(s)	837, 1116
BspFNI	CGCG	3 cut(s)	456, 960, 4461
BspHI	TCATGA	3 cut(s)	2017, 3496, 3700
BspMI	ACCTGC	1 cut(s)	2469
BspPI	GGATC	8 cut(s)	912, 1112, 1796, 1883, 3824, 4583, 4595, 5497
BspQI	GCTCTTC	2 cut(s)	132, 2139
BspT107I	GGYRCC	3 cut(s)	1466, 1865, 2638
BspTI	CTTAAG	1 cut(s)	1337
BspTNI	GGTCTC	2 cut(s)	837, 1496
BsrDI	GCAATG	5 cut(s)	623, 1181, 1506, 3327, 3624
BsrGI	TGTACA	1 cut(s)	4426
BssNI	GRCGYC	1 cut(s)	4041
Bst6I	CTCTTC	8 cut(s)	132, 245, 1034, 2119, 2139, 3501, 4508, 5043
BstACI	GRCGYC	1 cut(s)	4041
BstAFI	CTTAAG	1 cut(s)	1337
BstAUI	TGTACA	1 cut(s)	4426
BstBAI	YACGTR	2 cut(s)	1005, 5647
BstC8I	GCNNGC	8 cut(s)	472, 601, 958, 962, 2025, 3318, 3463, 5564
BstDSI	CCRYGG	2 cut(s)	120, 715
BstF5I	GGATG	6 cut(s)	684, 933, 1314, 1733, 2449, 5391
BstFNI	CGCG	3 cut(s)	456, 960, 4461
BstH2I	RGCGCY	1 cut(s)	1383
BstHHI	GCGC	3 cut(s)	1382, 2402, 4463
BstMAI	GTCTC	8 cut(s)	525, 837, 1194, 1496, 2683, 3029, 3702, 4733
BstMWI	GCNNNNNNNGC	6 cut(s)	625, 1693, 1737, 2071, 3322, 5015
BstNSI	RCATGY	2 cut(s)	919, 1190
BstSFI	CTRYAG	3 cut(s)	2406, 2491, 2877
BstSLI	GKGCMC	2 cut(s)	1508, 5143
BstSNI	TACGTA	1 cut(s)	1005
BstUI	CGCG	3 cut(s)	456, 960, 4461
BstV2I	GAAGAC	7 cut(s)	92, 431, 717, 806, 4247, 4572, 5342
BstX2I	RGATCY	4 cut(s)	904, 4021, 5502, 5531
BstYI	RGATCY	4 cut(s)	904, 4021, 5502, 5531
Bsu15I	ATCGAT	2 cut(s)	837, 1116
BsuI	GTATCC	1 cut(s)	978
BsuTUI	ATCGAT	2 cut(s)	837, 1116
BtgI	CCRYGG	2 cut(s)	120, 715
BtgZI	GCGATG	1 cut(s)	5675
BtrI	CACGTC	1 cut(s)	4331
BtsCI	GGATG	6 cut(s)	684, 933, 1314, 1733, 2449, 5391
BveI	ACCTGC	1 cut(s)	2469
Cac8I	GCNNGC	8 cut(s)	472, 601, 958, 962, 2025, 3318, 3463, 5564
CciI	TCATGA	3 cut(s)	2017, 3496, 3700
CfoI	GCGC	3 cut(s)	1382, 2402, 4463
Cfr13I	GGNCC	8 cut(s)	1391, 2458, 3773, 3823, 3930, 5016, 5139, 5140
ClaI	ATCGAT	2 cut(s)	837, 1116
CseI	GACGC	5 cut(s)	236, 1702, 3587, 4030, 4444
CspCI	CAANNNNNGTGG	4 cut(s)	2166, 2201, 4083, 4118
DraI	TTTAAA	3 cut(s)	61, 1371, 4200
DriI	GACNNNNNGTC	1 cut(s)	3392
EaeI	YGGCCR	3 cut(s)	338, 1356, 4262
Eam1104I	CTCTTC	8 cut(s)	132, 245, 1034, 2119, 2139, 3501, 4508, 5043
Eam1105I	GACNNNNNGTC	1 cut(s)	3392
EarI	CTCTTC	8 cut(s)	132, 245, 1034, 2119, 2139, 3501, 4508, 5043
Ecl136II	GAGCTC	1 cut(s)	2719
Eco105I	TACGTA	1 cut(s)	1005
Eco147I	AGGCCT	2 cut(s)	1245, 2713
Eco24I	GRGCYC	4 cut(s)	1154, 2721, 4341, 5143
Eco31I	GGTCTC	2 cut(s)	837, 1496
Eco32I	GATATC	1 cut(s)	2454
Eco47I	GGWCC	5 cut(s)	1391, 2458, 3773, 3823, 3930
Eco53kI	GAGCTC	1 cut(s)	2719
Eco57I	CTGAAG	6 cut(s)	113, 135, 429, 1701, 2163, 4881
Eco88I	CYCGRG	3 cut(s)	156, 974, 1128
EcoICRI	GAGCTC	1 cut(s)	2719
EcoO109I	RGGNCCY	4 cut(s)	3773, 3823, 5016, 5139
EcoRV	GATATC	1 cut(s)	2454
EcoT22I	ATGCAT	1 cut(s)	2890
EcoT38I	GRGCYC	4 cut(s)	1154, 2721, 4341, 5143
Esp3I	CGTCTC	1 cut(s)	4733
FalI	AAGNNNNNCTT	4 cut(s)	5433, 5465, 5585, 5617
FaqI	GGGAC	3 cut(s)	1378, 3809, 3916
FauI	CCCGC	2 cut(s)	592, 5363
FauNDI	CATATG	3 cut(s)	1518, 2619, 5063
FbaI	TGATCA	3 cut(s)	2011, 2526, 4363
FblI	GTMKAC	1 cut(s)	3408
FokI	GGATG	6 cut(s)	691, 920, 1301, 1740, 2456, 5378
FriOI	GRGCYC	4 cut(s)	1154, 2721, 4341, 5143
FspI	TGCGCA	1 cut(s)	2401
GlaI	GCGC	3 cut(s)	1381, 2401, 4462
GsaI	CCCAGC	2 cut(s)	2500, 4449
GsuI	CTGGAG	3 cut(s)	1266, 2156, 4895
HaeII	RGCGCY	1 cut(s)	1383
HapII	CCGG	3 cut(s)	2643, 3024, 5506
HgaI	GACGC	5 cut(s)	236, 1702, 3587, 4030, 4444
HhaI	GCGC	3 cut(s)	1382, 2402, 4463
Hin1I	GRCGYC	1 cut(s)	4041
Hin6I	GCGC	3 cut(s)	1380, 2400, 4461
HinP1I	GCGC	3 cut(s)	1380, 2400, 4461
HincII	GTYRAC	2 cut(s)	2250, 4720
HindII	GTYRAC	2 cut(s)	2250, 4720
HpaII	CCGG	3 cut(s)	2643, 3024, 5506
HphI	GGTGA	7 cut(s)	1393, 1441, 1870, 2581, 3689, 4547, 5636
Hpy99I	CGWCG	2 cut(s)	776, 1214
HpyF10VI	GCNNNNNNNGC	6 cut(s)	625, 1693, 1737, 2071, 3322, 5015
Hsp92I	GRCGYC	1 cut(s)	4041
HspAI	GCGC	3 cut(s)	1380, 2400, 4461
KflI	GGGWCCC	1 cut(s)	3823
KpnI	GGTACC	2 cut(s)	1869, 2642
Ksp22I	TGATCA	3 cut(s)	2011, 2526, 4363
LguI	GCTCTTC	2 cut(s)	132, 2139
MfeI	CAATTG	2 cut(s)	2277, 2514
MflI	RGATCY	4 cut(s)	904, 4021, 5502, 5531
MhlI	GDGCHC	5 cut(s)	1154, 1508, 2721, 4341, 5143
MlyI	GAGTC	4 cut(s)	797, 3008, 3283, 5646
MmeI	TCCRAC	6 cut(s)	1543, 2299, 2772, 4282, 4360, 4590
Mph1103I	ATGCAT	1 cut(s)	2890
MroXI	GAANNNNTTC	5 cut(s)	141, 1553, 2148, 3727, 5445
MslI	CAYNNNNRTG	5 cut(s)	1317, 1410, 2196, 2622, 4577
MspA1I	CMGCKG	1 cut(s)	3072
MspCI	CTTAAG	1 cut(s)	1337
MspI	CCGG	3 cut(s)	2643, 3024, 5506
MunI	CAATTG	2 cut(s)	2277, 2514
Mva1269I	GAATGC	2 cut(s)	3669, 4900
MvnI	CGCG	3 cut(s)	456, 960, 4461
MwoI	GCNNNNNNNGC	6 cut(s)	625, 1693, 1737, 2071, 3322, 5015
NciI	CCSGG	1 cut(s)	2643
NcoI	CCATGG	2 cut(s)	120, 715
NdeI	CATATG	3 cut(s)	1518, 2619, 5063
NmeAIII	GCCGAG	2 cut(s)	1311, 3124
NsbI	TGCGCA	1 cut(s)	2401
NsiI	ATGCAT	1 cut(s)	2890
NspI	RCATGY	2 cut(s)	919, 1190
OliI	CACNNNNGTG	1 cut(s)	1317
PaeR7I	CTCGAG	3 cut(s)	156, 974, 1128
PagI	TCATGA	3 cut(s)	2017, 3496, 3700
PceI	AGGCCT	2 cut(s)	1245, 2713
PciSI	GCTCTTC	2 cut(s)	132, 2139
PcsI	WCGNNNNNNNCGW	1 cut(s)	768
PctI	GAATGC	2 cut(s)	3669, 4900
PdmI	GAANNNNTTC	5 cut(s)	141, 1553, 2148, 3727, 5445
PflMI	CCANNNNNTGG	2 cut(s)	2867, 3839
PfoI	TCCNGGA	1 cut(s)	4644
PleI	GAGTC	4 cut(s)	796, 3008, 3283, 5645
PpsI	GAGTC	4 cut(s)	796, 3008, 3283, 5645
Ppu21I	YACGTR	2 cut(s)	1005, 5647
PpuMI	RGGWCCY	2 cut(s)	3773, 3823
PshBI	ATTAAT	2 cut(s)	2033, 2586
Psp124BI	GAGCTC	1 cut(s)	2721
Psp5II	RGGWCCY	2 cut(s)	3773, 3823
PspFI	CCCAGC	2 cut(s)	2496, 4445
PspOMI	GGGCCC	1 cut(s)	5139
PspPI	GGNCC	8 cut(s)	1391, 2458, 3773, 3823, 3930, 5016, 5139, 5140
PspPPI	RGGWCCY	2 cut(s)	3773, 3823
PspXI	VCTCGAGB	1 cut(s)	156
PsrI	GAACNNNNNNTAC	2 cut(s)	3909, 3941
PsuI	RGATCY	4 cut(s)	904, 4021, 5502, 5531
PvuII	CAGCTG	1 cut(s)	3072
RseI	CAYNNNNRTG	5 cut(s)	1317, 1410, 2196, 2622, 4577
SacI	GAGCTC	1 cut(s)	2721
SapI	GCTCTTC	2 cut(s)	132, 2139
Sau96I	GGNCC	8 cut(s)	1391, 2458, 3773, 3823, 3930, 5016, 5139, 5140
ScaI	AGTACT	2 cut(s)	1329, 2432
SchI	GAGTC	4 cut(s)	797, 3008, 3283, 5646
SduI	GDGCHC	5 cut(s)	1154, 1508, 2721, 4341, 5143
SfcI	CTRYAG	3 cut(s)	2406, 2491, 2877
Sfr274I	CTCGAG	3 cut(s)	156, 974, 1128
SinI	GGWCC	5 cut(s)	1391, 2458, 3773, 3823, 3930
SlaI	CTCGAG	3 cut(s)	156, 974, 1128
SmiMI	CAYNNNNRTG	5 cut(s)	1317, 1410, 2196, 2622, 4577
SmlI	CTYRAG	9 cut(s)	156, 974, 1128, 1337, 3371, 4712, 5020, 5396, 5557
SmoI	CTYRAG	9 cut(s)	156, 974, 1128, 1337, 3371, 4712, 5020, 5396, 5557
SnaBI	TACGTA	1 cut(s)	1005
SpeI	ACTAGT	3 cut(s)	1850, 1937, 2692
SseBI	AGGCCT	2 cut(s)	1245, 2713
SspI	AATATT	5 cut(s)	373, 1107, 2123, 2584, 5035
SstI	GAGCTC	1 cut(s)	2721
StuI	AGGCCT	2 cut(s)	1245, 2713
TatI	WGTACW	4 cut(s)	1327, 2430, 3197, 4426
TauI	GCSGC	3 cut(s)	321, 324, 4264
TspGWI	ACGGA	8 cut(s)	1307, 1571, 1946, 2222, 3665, 3943, 4757, 5314
Van91I	CCANNNNNTGG	2 cut(s)	2867, 3839
Vha464I	CTTAAG	1 cut(s)	1337
VpaK11BI	GGWCC	5 cut(s)	1391, 2458, 3773, 3823, 3930
VspI	ATTAAT	2 cut(s)	2033, 2586
XapI	RAATTY	8 cut(s)	20, 2507, 2572, 3221, 3726, 4126, 4163, 4904
XceI	RCATGY	2 cut(s)	919, 1190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1484
XhoI	CTCGAG	3 cut(s)	156, 974, 1128
XmaJI	CCTAGG	1 cut(s)	1544
XmiI	GTMKAC	1 cut(s)	3408
XmnI	GAANNNNTTC	5 cut(s)	141, 1553, 2148, 3727, 5445
ZrmI	AGTACT	2 cut(s)	1329, 2432
Zsp2I	ATGCAT	1 cut(s)	2890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.