Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006835

Physical Location & Seq

Genomic Coordinates Forward (+)

25637224 .. 25654792

Gene Structure 17569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5844 bp

ATGGCACCGTCGTCCAAGAAACCTCAGGGAGGGAATAACAAGAATCCCAGAGACGCCCCAAAGTTCAACAAATCCTCCAAAAAACCTTTCAAACCAAACAAGGATCACAACAACAACGCCGCCAGGTCCGAAGCCATGGCTTTGCAGCTCGAAGACGACGTCCCCGACTTCCCCAGAGGTGGAGGGAGCTCTTTGAATCGAAAAGAACGCGACGAAATTCGGGCTGAAGTTGACGCCGAATTCGAGGCAGAGGAGAGGGAGATGAAGAAGAAAGGGAAGAAGAAAAGGGTGCCGAAGGACAGCCTTGTAAACGAGGACGAGATGGGCTCGCTTTTCGGCGATGGCATCACTGGAAAACTACCTAGATATGCAAACAAGATCACTTTGAAGAATATATCTCCTGGGATGAAGGTTTGGGGAGTTGTTGCCGAAGTCAATGAAAAGGACCTTGTAATTAGTCTTCCAGGGGGTTTGCGTGGACTAGTTCGAGCGTCTGATGCTTTTGATCCTATTCTGGATGATGAAACTGAGGCCTTAGCAGATAGTGTCCTCCCTAGCATATTCCGGATAGGGCAGCTGGTATCTTGCATTGTGTTGCAATTGGATGAGGATAAGAAAGAGAAAGGGAAACGGAAGATCTGGCTTTCTTTGCGCCTCTCTTTGTTGCATAAAGGCTTCACTTTGGATTCTGTTCAAGAAGGCATGGTCCTTACAGCCTATATTAAAAGCATTGAAGACCATGGTTACATTCTTCATTTTGGTTTATCTTCATTCTCAGGGTTTTTGCCAAAAAATAGCCAAGCTGCTCATTCTCTTCTTCTTACAGACAGCATGGTTCAAGTGAGCAGTGGTCAACTGCTTCAAGCTGCTGTTAGAAGAGTTGATAAAACCCGCAAGGTTATTCATATGAGTTCTGACCCAGAGATGGTGTCGAAGTGTGTGACCAAAGATCTCAAGGGAATTTCAATTGATCTACTTGTTCCGGGGATGATAGTCAATGCTCGTGTGTTATCTACCCTTGAAAATGGGGTTATGTTATCATTTCTTACTTATTTTACTGGAACTGTTGATATATTTCATCTGCAAAATATTTACCCTACTACAAACTGGAAGGAAGATTACAATCAAAACAAGAAGCTCAATGCTCGAGTATTATTTGTCGATCCTTCAACTAGAGCTGTTGGTTTGACACTAAATCCACATCTTGTTCGCAACAAGGCTCCTCCTTCACATGTCAAAATTGGAGATATATGTGACGATGCAAAGGTAGTGAGGGTTGATAGAGGATTGGGCCTTCTGCTTGAAATACCATCTACCCAAGTTTCAACTCCGGCATACGTTAGTGTATGTTCATTTTGTGGCTCTGTCTTTGAGATATCTGATGTGGCTGAAGAAGTTCGGAAGCTTGAAAAGAAGTTCAAGGAAGGTACTCGTGTTCGTGTCAGAATTCTTGGGTTTAGGCACTTGGAAGGGCTTGCCACAGGGATTTTGAAGGTAGTGCTTCTCAAATCTTGTTTCCGGTGGCAGACAGACTCTTCTGCGATATCACATGTGGCAAGTGCATTTGAAGGGTCAGTTTTCACTCACTCTGATGTCAAACCTGGGATGGTTGTGAGAGGTAAAATAATAGCTGTTGACAGCTTTGGGGCTATTGTGCAATTCCCTGGTGGTGTGAAGGCTCTTTGTCCTCTTACTCATATGTCTGAATTTGAAATTGCAAAGCCCAGAAAAAAATTTAAGGTTGGGGCTGAACTTGTGTTCCGTGTGCTTGGTTGCAAGTCCAAGAGAATAACTGTTACACACAAGAAAACACTTGTAAAGTCAAAACTGGGGATTCTTAGTTCATATGCTGATGCTGCTGATGGATTAATAACACATGGATCTGAACTCGGATTGGAGCCAGGATCTGACCCAAGTTCAATGTATCATGTTGGACAAGTTATCAAATGTAGAGTTATTGGCTCTAATGCTACATCGAGACGAATCAAACTTAGCTTGATAATACGGCCTCCAAGGGTTTCTGAGGATGATATGGCGAAGTTGGGCAGCCTGGTTTCAGGAGTTGTTGACCGGGTAACCCCCAATGCTGTCATGGTTTATGTTAATGCAAAAGGTTACTCAATGGGCACAATTTTTACAGACCACTTGGCAGATCACCATGGGCTGGCTGCTTTGATGAAGTCAGTATTGAAGCCTGGTTATGAATTTGATCAATTATTGGTTTTAGACACTGAAGGCAACAATTTGATCCTATCTGCAAAACATTCTCTGATTAATTCAGCTCCCATGCTTCCTTCAGAAGTCAGTCAAGTTCATCCTAATACGGTAGTACATGGCTACATTTGTAACTTAATTGACACTGGGTGCTTTGTTCGCTTTCTTGGGCGTGTGACTGGTTTCTCCCCAAGGCACAAGGCAATGGATGACCATAAAGGGGATCTTTCAGAAGCCTATTACATTGGACAGTCTGTTCGGAGTACTATACTCGATGTCAATAGTGAAACAGGTAGGATAACACTATCATTGAAGCAGTCATCTTGCTCTTCAACAGATGCCTCCTTTATCCGGGAATACTTTATTTCAGAGGAGAAGATTGCAAAGCTGCAAGTGTTGGATTCAAAAGAATCCAAATCAGATTGGTCAGAAGGATTTTCCATTGGCAGTGTTGTTGAAGGGAAGGTCCAGGAGGCAAAGGACATTGGAGTTGTTGTCAGCTTTGAGAAATATAATGATGTTTTCGGTTTCATCACGCACTATCAATTAGCTGGTACCACTGTAGAAACAGGCTCCATTGTTCGAGCAGTTGTACTTGATGTTGCCAAGGCAGAGCACCTTGTTGACTTATCGCTCAAACCAGAATTCATTACTAACTTAAAACAAGAAAGCTCTAAGAGCCAAACTCATATGAAGAAACGAAGAAGAGAAGTCTCGGATGATCCGGAGATGCATGAGACCGTAAATGCTGTGGTTGAGATTGTGAAGGAGAATTACCTGGCAAGTTTTCATGTTCTTTCTATCCCAAAGTATAACTATGCTGTAGGATATGCATCAATTTCTGACTACAACACTCAAAAGTTTCCTCAGAAACAGTTTCTGAATGGACAAAGTGTCAATGCTACTGTCATGGCCCTTCCAAGCCCTACAACCGTTGGGAGATTGCTTTTGCTACTTAATTCTTTGAGTGAGTCCGCTGATACTTCCAGTTCAAAGCGGGCAAAGAAGAAATCCAGCTACAAAGTGGGATCTGTGGTCCAGGCAGAGATAACTGAAATAAAGCCTCTTGAACTAAGATTGAAGTTTGGAATCGGCTTTCATGGACGGGTCCGTATAACAGAGGTAAATGATGATATTTTGGAAGATCCATTTAACAACTTCAGAATTGGGCAAACAGTCACTGCAAGGATTGTTGCAAAGACTAATTATTCAGATAACAACAAAAAGAGTTTCCAGTGGGATCTGTCATTGAAACCTAGTTTGTTAACAGGTTCGTGTGAAATAGAGGAAAATATTTTGAAAGGAGATCTCGAGTTCTCAATTGGAAAACATGTCACTGGCTATGTGTACAAGGTGGATGCTGAATGGGTCTGGTTAACAATATCTCGAAATGTTAGGGCTCAGCTTTTCATTCTTGACAGCGCTTGTGAGCCTAGTGAACTTCAAGAGTTTCAGAAACGCTTTCATGTGGGAAATGCTGTATCTGGTCATGTTTTAAGTGTTAGCAAGGAGAAAAAGCTATTACGGCTGGTTTCATATCCTTTTACTCCCGTCACTGATAAAGCTGTTGATAATGAGGTGTCAAAGACGGATGCAAATGTTAGCATGTTGAATGCAACTGCTCATATTTGCGAGGGATGTGTTGTAGGTGGGAGAATTATTAAAAAACTTCCAGGTGTTGGTGGATTGACTGTGCAAATTGGTCCCCATATGTATGGCAGGGTTCATTATAGTGAGCTTTCTGACTCATGGGTGTCCAACCCATTGTCTGGATATGAGGAAGGTCAATTTGTCAAATGCAAGGTTGTTGAATGTAGTCGCTCTGGACAGGGAACTTTTCACATTGACTTGTCATTACGGTCTTCTTTAGTTGGCACACTTTGTCAAGATTCCAATGAACCTGACAATGACAAGCATACTCATACCGAACGGCCGGAAAAGATTGACGATCTGAAACCTAATATGGTCATACAGGGTTATGTGAAAAATGTTTCATCAAAAGGATGTTTTATTTTGCTTTCGCGGAAGCTTGATGCCAAAATTCTCGTCTCCAATTTATCCGATGGATATGTTGATGATCCTGAAAAGGAATTCCCAGTTGGAAAACTTGTTACTGGCAGGGTGTCATCTGTGGAGCCTTTATCAAAGAGAGTTGAAGTTACCTTGAAGTCACTGAGTGCAAGCAGTTTGCCACAATCTGCAAGGAATAATTTGGATAGCTTGCATGTCGGAGATATTATCTCTGGCAGGGTAAAACGAGTTGAGTCATATGGATTATTCATCACAATTGACAATACAAATGTGGTTGGATTATGCCATGTGTCAGAGCTTGCAGAAGATAAGAAGGACAATTTTGAAACTAAATACAAAACAGGAGAGAGGGTGTCAGCAAAAGTATTGAAGGTGGACAAGGAGAGGCACCGAGTTTCTCTCGGAATGAAGGATTTGTATATTATGGATAGCGACCACACACCTCCAAAACAAGATCTTGATGAACCTATCAGACAGACTGATTTGGTGGATGATTCTAAGTCAGTTATGTGTCCTGTTGGCAGTTTCCCTGGGGACCAGAGCATGGATATTGAACTTGAAAATGCAGAGTTCCAGTTTCTTGCACAAGTAGAATCAAGAGCTTTAGTTCCTCCACTTGAAGTCACTCTTGATGATGTAGACCAAGGCGATGATATTGTTAGCCAGGATCAAGAGCTTCCTGCTGCGGAGGACGCTGTAGATGACAAGAAAAAGAAGCTCACGAAGAAAAAAGCCAGGGATGAGAGGGAGCGTGAGATACGGGCCGCTGAGGAAAGATTATTGGAGAAAGATATACCTAGGACTGATGAGGAATTTGAGAAACTAGTTAGAAGTTCTCCAAATAGCAGTTATGTTTGGATAAAATATATGGAATTTGTGCTCTCTATGGCTGATGTTGAGAAGGCACGCTCTATTGCTAAAAGGGCTTTGGAGACGATAAACTTTCGAGAAGAGAACGAGAAGCTCAATGTTTGGGTGGCTTATTTTAATTTGGAAAGCAAATATGGACGTCCTCCAGAGGAGGCTGTAATGAAAGTCTTTCAAAAAGCGTTGCAGTATAATGATCCCAAAAAGGTTCATCTAGCACTCTTGGGAGTCTTTGAGAGGTCTGAGCAACACAAGTTGGCTGATGAACTTGCTGATAACATGATTAAGAGGTTTAAGAAGTCTTGCAAGGTTTGGCTAAGGCGGGTACAGAGGCTATTGGTGCAACAGCAGGATGGGGTTCAGGATTTTGTCTCTCGTGCTGAAAAGATCCTTCCTAAGCATAAGCATATCAAATTCTTGTCACAGACAGCCATCCTGGAGTTCAAATGTGGGAATCCAGAGAGAGGGCGCTCCATGTTTGAAAATATTTTGAGGCAAAACCCGAAGAGAACAGACTTGTGGAGTGTTTATCTTGATCAAGAAATTCGACTTGGAGATACTGATCTGATTCGTGCATTGTTTGAGAGGGCAACTAGTTTGAGCTTACCAGCTAAAAAGATGAAATTCTTGTTCAAAAAATATCTGGAATATGAGGAGCGTCATGGTGACGAAGAGAGGGCCAATTATGTGAAACAGAAGGCAATGAGTTATGTTGAGAATACAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0000462 GO:0000466 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1 Suf

Protein Analysis

1947

Amino Acids

217.22

Weight (kDa)

8.53

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1_RRP5	PF23459	133 - 206	4.8e-06	RRP5 S1 domain
S1_RRP5	PF23459	327 - 398	1.4e-06	RRP5 S1 domain
OB_RRP5_4th	PF24685	407 - 502	1.3e-31	RRP5 OB-fold domain
S1	PF00575	532 - 596	3.8e-08	S1 RNA binding domain
S1	PF00575	773 - 843	1.9e-07	S1 RNA binding domain
OB_RRP5	PF24682	968 - 1059	5.7e-36	RRP5 OB-fold domain
S1_RRP5	PF23459	1389 - 1459	5.2e-07	RRP5 S1 domain
S1	PF00575	1481 - 1552	2.6e-16	S1 RNA binding domain
HAT_Syf1_CNRKL1_C	PF23231	1695 - 1944	4.7e-11	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
Suf	PF05843	1845 - 1943	2.7e-07	Suppressor of forked protein (Suf)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11964 AT3G11964
fragaria_vesca	FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470
malus_domestica	MD12G1051100.v1.1
prunus_persica	Prupe.7G085700_v2.0.a1 Prupe.7G085700_v2.0.a1
pyrus_communis	pycom12g04550
rosa_chinensis	RchiOBHm_Chr3g0478661
rosa_laevigata	RLG00000023635
rosa_multiflora	Rmu_sc0002454.1_g000002 Rmu_sc0023704.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403220
rosa_rugosa	Rorug03G0166800 Rorug03G0166800 Rorug03G0166900
rosa_samantha	Rh3AG219000 Rh3BG250700 Rh3CG247500 Rh3DG243800
rosa_wichuraiana	Rw3G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	162, 5257
Acc65I	GGTACC	1 cut(s)	2768
AccB1I	GGYRCC	4 cut(s)	4, 289, 2768, 4632
AccB7I	CCANNNNNTGG	4 cut(s)	2164, 3893, 3983, 4789
AccI	GTMKAC	1 cut(s)	4884
AccII	CGCG	2 cut(s)	210, 4237
AccIII	TCCGGA	2 cut(s)	564, 2938
AciI	CCGC	8 cut(s)	120, 892, 3189, 3211, 4237, 4931, 5010, 5434
AcoI	YGGCCR	1 cut(s)	4145
AcuI	CTGAAG	5 cut(s)	246, 1410, 2253, 2280, 3358
AcyI	GRCGYC	4 cut(s)	54, 159, 234, 5254
AdeI	CACNNNGTG	2 cut(s)	2364, 4391
AfaI	GTAC	7 cut(s)	1429, 2331, 2479, 2770, 2808, 3563, 5439
AfeI	AGCGCT	1 cut(s)	3637
AflIII	ACRYGT	3 cut(s)	1231, 1549, 3544
AhdI	GACNNNNNGTC	1 cut(s)	3107
AhlI	ACTAGT	3 cut(s)	481, 5068, 5705
AjuI	GAANNNNNNNTTGG	6 cut(s)	71, 103, 4296, 4328, 5646, 5678
AloI	GAACNNNNNNTCC	6 cut(s)	1743, 1775, 1825, 1857, 2454, 2486
Alw21I	GWGCWC	3 cut(s)	191, 2832, 5127
Alw26I	GTCTC	7 cut(s)	45, 1972, 2932, 2945, 4267, 5171, 5488
AlwNI	CAGNNNCTG	3 cut(s)	1907, 3094, 3395
Ama87I	CYCGRG	2 cut(s)	1146, 3524
Aor13HI	TCCGGA	2 cut(s)	564, 2938
Aor51HI	AGCGCT	1 cut(s)	3637
AoxI	GGCC	7 cut(s)	531, 1291, 2006, 3126, 4145, 5007, 5790
ApeKI	GCWGC	9 cut(s)	145, 574, 803, 866, 1856, 2046, 2168, 2602, 4928
ArsI	GACNNNNNNTTYG	8 cut(s)	144, 176, 224, 256, 2454, 2486, 4245, 4277
AseI	ATTAAT	2 cut(s)	1868, 2274
Asp700I	GAANNNNTTC	1 cut(s)	1395
Asp718I	GGTACC	1 cut(s)	2768
AspA2I	CCTAGG	1 cut(s)	5042
AspLEI	GCGC	3 cut(s)	654, 3638, 5583
AsuC2I	CCSGG	3 cut(s)	984, 2072, 2567
AsuHPI	GGTGA	2 cut(s)	2147, 5789
AvaI	CYCGRG	2 cut(s)	1146, 3524
AvaII	GGWCC	8 cut(s)	126, 445, 706, 2680, 3250, 3322, 3917, 4780
AvrII	CCTAGG	1 cut(s)	5042
AxyI	CCTNAGG	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	2129
BaeI	ACNNNNGTAYC	4 cut(s)	1419, 1452, 2760, 2793
BanI	GGYRCC	4 cut(s)	4, 289, 2768, 4632
BanII	GRGCYC	3 cut(s)	191, 329, 3616
BarI	GAAGNNNNNNTAC	6 cut(s)	444, 476, 1103, 1135, 2972, 3004
BauI	CACGAG	3 cut(s)	1002, 1431, 5487
BbsI	GAAGAC	4 cut(s)	159, 452, 741, 4068
Bbv12I	GWGCWC	3 cut(s)	191, 2832, 5127
BbvCI	CCTCAGC	1 cut(s)	5013
BbvI	GCAGC	9 cut(s)	157, 586, 790, 853, 1843, 2058, 2155, 2589, 4915
BccI	CCATC	9 cut(s)	316, 335, 919, 1318, 1600, 1856, 4271, 5459, 5552
BceAI	ACGGC	3 cut(s)	2021, 3755, 4160
BclI	TGATCA	2 cut(s)	2209, 5647
BcnI	CCSGG	3 cut(s)	984, 2072, 2567
BcoDI	GTCTC	7 cut(s)	45, 1972, 2932, 2945, 4267, 5171, 5488
BcuI	ACTAGT	3 cut(s)	481, 5068, 5705
BfmI	CTRYAG	3 cut(s)	2775, 3036, 4941
BfoI	RGCGCY	2 cut(s)	3639, 5584
BglII	AGATCT	4 cut(s)	636, 949, 3520, 4699
BlnI	CCTAGG	1 cut(s)	5042
BlpI	GCTNAGC	1 cut(s)	3615
BmcAI	AGTACT	1 cut(s)	2479
Bme18I	GGWCC	8 cut(s)	126, 445, 706, 2680, 3250, 3322, 3917, 4780
BmeRI	GACNNNNNGTC	1 cut(s)	3107
BmeT110I	CYCGRG	2 cut(s)	1146, 3524
BmrI	ACTGGG	3 cut(s)	1838, 2370, 4304
BmuI	ACTGGG	3 cut(s)	1838, 2370, 4304
BpiI	GAAGAC	4 cut(s)	159, 452, 741, 4068
BplI	GAGNNNNNCTC	6 cut(s)	311, 343, 2884, 2916, 4629, 4661
BpmI	CTGGAG	2 cut(s)	5244, 5570
Bpu10I	CCTNAGC	4 cut(s)	535, 5013, 5429, 5508
Bpu1102I	GCTNAGC	1 cut(s)	3615
BpuEI	CTTGAG	1 cut(s)	938
BpuMI	CCSGG	3 cut(s)	984, 2072, 2567
BsaBI	GATNNNNATC	3 cut(s)	1122, 3046, 5673
BsaHI	GRCGYC	4 cut(s)	54, 159, 234, 5254
BsaI	GGTCTC	1 cut(s)	2945
BsaWI	WCCGGW	3 cut(s)	564, 1518, 2938
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 2694, 2724, 4581, 4611
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	2 cut(s)	2424, 5820
Bse8I	GATNNNNATC	3 cut(s)	1122, 3046, 5673
BseAI	TCCGGA	2 cut(s)	564, 2938
BseJI	GATNNNNATC	3 cut(s)	1122, 3046, 5673
BseMI	GCAATG	2 cut(s)	2424, 5820
BseMII	CTCAG	9 cut(s)	38, 519, 789, 2013, 3095, 3629, 4379, 5004, 5346
BseRI	GAGGAG	5 cut(s)	266, 1212, 2600, 5279, 5780
BseSI	GKGCMC	1 cut(s)	2129
BseX3I	CGGCCG	1 cut(s)	4145
BseXI	GCAGC	9 cut(s)	157, 586, 790, 853, 1843, 2058, 2155, 2589, 4915
Bsh1236I	CGCG	2 cut(s)	210, 4237
Bsh1285I	CGRYCG	1 cut(s)	4148
BshFI	GGCC	7 cut(s)	533, 1293, 2008, 3128, 4147, 5009, 5792
BshNI	GGYRCC	4 cut(s)	4, 289, 2768, 4632
BsiEI	CGRYCG	1 cut(s)	4148
BsiHKAI	GWGCWC	3 cut(s)	191, 2832, 5127
BsiHKCI	CYCGRG	2 cut(s)	1146, 3524
BsiSI	CCGG	8 cut(s)	565, 983, 1331, 1519, 2071, 2566, 2939, 4148
BslFI	GGGAC	3 cut(s)	146, 3903, 4793
BsmAI	GTCTC	7 cut(s)	45, 1972, 2932, 2945, 4267, 5171, 5488
BsmBI	CGTCTC	4 cut(s)	45, 1972, 4267, 5171
BsmFI	GGGAC	3 cut(s)	146, 3903, 4793
BsmI	GAATGC	1 cut(s)	3832
BsnI	GGCC	7 cut(s)	533, 1293, 2008, 3128, 4147, 5009, 5792
Bso31I	GGTCTC	1 cut(s)	2945
BsoBI	CYCGRG	2 cut(s)	1146, 3524
Bsp1286I	GDGCHC	6 cut(s)	191, 329, 2129, 2832, 3616, 5127
Bsp13I	TCCGGA	2 cut(s)	564, 2938
Bsp1407I	TGTACA	1 cut(s)	3561
Bsp1720I	GCTNAGC	1 cut(s)	3615
Bsp19I	CCATGG	3 cut(s)	135, 739, 2158
BspACI	CCGC	8 cut(s)	120, 892, 3189, 3211, 4237, 4931, 5010, 5434
BspANI	GGCC	7 cut(s)	533, 1293, 2008, 3128, 4147, 5009, 5792
BspCNI	CTCAG	9 cut(s)	37, 520, 788, 2014, 3094, 3628, 4380, 5005, 5347
BspEI	TCCGGA	2 cut(s)	564, 2938
BspFNI	CGCG	2 cut(s)	210, 4237
BspQI	GCTCTTC	1 cut(s)	2548
BspT107I	GGYRCC	4 cut(s)	4, 289, 2768, 4632
BspTNI	GGTCTC	1 cut(s)	2945
BsrDI	GCAATG	2 cut(s)	2424, 5820
BsrGI	TGTACA	1 cut(s)	3561
BssNI	GRCGYC	4 cut(s)	54, 159, 234, 5254
BssSI	CACGAG	3 cut(s)	1002, 1431, 5487
BssT1I	CCWWGG	8 cut(s)	135, 739, 2012, 2158, 2405, 2820, 4888, 5042
Bst2BI	CACGAG	3 cut(s)	1002, 1431, 5487
Bst6I	CTCTTC	8 cut(s)	819, 871, 1540, 2548, 2914, 5190, 5612, 5778
BstACI	GRCGYC	4 cut(s)	54, 159, 234, 5254
BstAUI	TGTACA	1 cut(s)	3561
BstC8I	GCNNGC	8 cut(s)	329, 1476, 2166, 3213, 4396, 4436, 4545, 5152
BstDSI	CCRYGG	3 cut(s)	135, 739, 2158
BstEII	GGTNACC	1 cut(s)	2074
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	210, 4237
BstH2I	RGCGCY	2 cut(s)	3639, 5584
BstHHI	GCGC	3 cut(s)	654, 3638, 5583
BstMAI	GTCTC	7 cut(s)	45, 1972, 2932, 2945, 4267, 5171, 5488
BstMCI	CGRYCG	1 cut(s)	4148
BstMWI	GCNNNNNNNGC	9 cut(s)	497, 649, 1856, 2373, 2892, 3739, 4937, 5168, 5452
BstNSI	RCATGY	5 cut(s)	1235, 1553, 3548, 3823, 4442
BstPI	GGTNACC	1 cut(s)	2074
BstSFI	CTRYAG	3 cut(s)	2775, 3036, 4941
BstSLI	GKGCMC	1 cut(s)	2129
BstUI	CGCG	2 cut(s)	210, 4237
BstV1I	GCAGC	9 cut(s)	157, 586, 790, 853, 1843, 2058, 2155, 2589, 4915
BstV2I	GAAGAC	4 cut(s)	159, 452, 741, 4068
BstXI	CCANNNNNNTGG	1 cut(s)	3929
BstZI	CGGCCG	1 cut(s)	4145
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	7 cut(s)	533, 1293, 2008, 3128, 4147, 5009, 5792
BtgI	CCRYGG	3 cut(s)	135, 739, 2158
BtgZI	GCGATG	2 cut(s)	354, 4908
BtsI	GCAGTG	3 cut(s)	853, 2668, 3393
Cac8I	GCNNGC	8 cut(s)	329, 1476, 2166, 3213, 4396, 4436, 4545, 5152
CaiI	CAGNNNCTG	3 cut(s)	1907, 3094, 3395
CfoI	GCGC	3 cut(s)	654, 3638, 5583
CseI	GACGC	5 cut(s)	62, 242, 480, 4946, 5759
Csp6I	GTAC	7 cut(s)	1428, 2330, 2478, 2769, 2807, 3562, 5438
CviQI	GTAC	7 cut(s)	1428, 2330, 2478, 2769, 2807, 3562, 5438
DraIII	CACNNNGTG	2 cut(s)	2364, 4391
DriI	GACNNNNNGTC	1 cut(s)	3107
EaeI	YGGCCR	1 cut(s)	4145
EagI	CGGCCG	1 cut(s)	4145
Eam1104I	CTCTTC	8 cut(s)	819, 871, 1540, 2548, 2914, 5190, 5612, 5778
Eam1105I	GACNNNNNGTC	1 cut(s)	3107
EarI	CTCTTC	8 cut(s)	819, 871, 1540, 2548, 2914, 5190, 5612, 5778
Ecl136II	GAGCTC	1 cut(s)	189
EclXI	CGGCCG	1 cut(s)	4145
Eco130I	CCWWGG	8 cut(s)	135, 739, 2012, 2158, 2405, 2820, 4888, 5042
Eco147I	AGGCCT	1 cut(s)	533
Eco24I	GRGCYC	3 cut(s)	191, 329, 3616
Eco31I	GGTCTC	1 cut(s)	2945
Eco32I	GATATC	2 cut(s)	1377, 1545
Eco47I	GGWCC	8 cut(s)	126, 445, 706, 2680, 3250, 3322, 3917, 4780
Eco47III	AGCGCT	1 cut(s)	3637
Eco52I	CGGCCG	1 cut(s)	4145
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	5 cut(s)	246, 1410, 2253, 2280, 3358
Eco81I	CCTNAGG	1 cut(s)	24
Eco88I	CYCGRG	2 cut(s)	1146, 3524
Eco91I	GGTNACC	1 cut(s)	2074
EcoICRI	GAGCTC	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	2074
EcoRI	GAATTC	4 cut(s)	239, 1446, 2858, 4304
EcoRV	GATATC	2 cut(s)	1377, 1545
EcoT14I	CCWWGG	8 cut(s)	135, 739, 2012, 2158, 2405, 2820, 4888, 5042
EcoT22I	ATGCAT	2 cut(s)	2949, 3049
EcoT38I	GRGCYC	3 cut(s)	191, 329, 3616
ErhI	CCWWGG	8 cut(s)	135, 739, 2012, 2158, 2405, 2820, 4888, 5042
Esp3I	CGTCTC	4 cut(s)	45, 1972, 4267, 5171
FalI	AAGNNNNNCTT	4 cut(s)	2424, 2456, 4857, 4889
FaqI	GGGAC	3 cut(s)	146, 3903, 4793
FauI	CCCGC	3 cut(s)	899, 3204, 5427
FauNDI	CATATG	6 cut(s)	906, 1698, 1846, 2904, 3924, 4483
FbaI	TGATCA	2 cut(s)	2209, 5647
FblI	GTMKAC	1 cut(s)	4884
FriOI	GRGCYC	3 cut(s)	191, 329, 3616
GlaI	GCGC	3 cut(s)	653, 3637, 5582
GsuI	CTGGAG	2 cut(s)	5244, 5570
HaeII	RGCGCY	2 cut(s)	3639, 5584
HaeIII	GGCC	7 cut(s)	533, 1293, 2008, 3128, 4147, 5009, 5792
HapII	CCGG	8 cut(s)	565, 983, 1331, 1519, 2071, 2566, 2939, 4148
HgaI	GACGC	5 cut(s)	62, 242, 480, 4946, 5759
HhaI	GCGC	3 cut(s)	654, 3638, 5583
Hin1I	GRCGYC	4 cut(s)	54, 159, 234, 5254
Hin6I	GCGC	3 cut(s)	652, 3636, 5581
HinP1I	GCGC	3 cut(s)	652, 3636, 5581
HincII	GTYRAC	7 cut(s)	232, 854, 1636, 2068, 2839, 3480, 3591
HindII	GTYRAC	7 cut(s)	232, 854, 1636, 2068, 2839, 3480, 3591
HindIII	AAGCTT	2 cut(s)	1403, 4241
HpaI	GTTAAC	2 cut(s)	3480, 3591
HpaII	CCGG	8 cut(s)	565, 983, 1331, 1519, 2071, 2566, 2939, 4148
HphI	GGTGA	2 cut(s)	2147, 5789
Hpy99I	CGWCG	3 cut(s)	13, 161, 215
HpyCH4IV	ACGT	3 cut(s)	159, 1338, 5254
HpyF10VI	GCNNNNNNNGC	9 cut(s)	497, 649, 1856, 2373, 2892, 3739, 4937, 5168, 5452
HpySE526I	ACGT	3 cut(s)	159, 1338, 5254
Hsp92I	GRCGYC	4 cut(s)	54, 159, 234, 5254
HspAI	GCGC	3 cut(s)	652, 3636, 5581
Kpn2I	TCCGGA	2 cut(s)	564, 2938
KpnI	GGTACC	1 cut(s)	2772
Ksp22I	TGATCA	2 cut(s)	2209, 5647
KspAI	GTTAAC	2 cut(s)	3480, 3591
LguI	GCTCTTC	1 cut(s)	2548
LmnI	GCTCC	9 cut(s)	186, 1225, 1897, 2287, 2792, 4348, 4993, 5588, 5767
Lsp1109I	GCAGC	9 cut(s)	157, 586, 790, 853, 1843, 2058, 2155, 2589, 4915
MaeII	ACGT	3 cut(s)	159, 1338, 5254
MfeI	CAATTG	4 cut(s)	599, 966, 3534, 4500
MhlI	GDGCHC	6 cut(s)	191, 329, 2129, 2832, 3616, 5127
MlyI	GAGTC	5 cut(s)	1526, 3194, 3953, 4487, 5349
MmeI	TCCRAC	6 cut(s)	1912, 2592, 3996, 4294, 4423, 4501
Mph1103I	ATGCAT	2 cut(s)	2949, 3049
MroI	TCCGGA	2 cut(s)	564, 2938
MroXI	GAANNNNTTC	1 cut(s)	1395
MslI	CAYNNNNRTG	3 cut(s)	1590, 3927, 3945
MspA1I	CMGCKG	3 cut(s)	577, 3191, 5012
MspI	CCGG	8 cut(s)	565, 983, 1331, 1519, 2071, 2566, 2939, 4148
MunI	CAATTG	4 cut(s)	599, 966, 3534, 4500
Mva1269I	GAATGC	1 cut(s)	3832
MvnI	CGCG	2 cut(s)	210, 4237
MwoI	GCNNNNNNNGC	9 cut(s)	497, 649, 1856, 2373, 2892, 3739, 4937, 5168, 5452
NciI	CCSGG	3 cut(s)	984, 2072, 2567
NcoI	CCATGG	3 cut(s)	135, 739, 2158
NdeI	CATATG	6 cut(s)	906, 1698, 1846, 2904, 3924, 4483
NsiI	ATGCAT	2 cut(s)	2949, 3049
NspI	RCATGY	5 cut(s)	1235, 1553, 3548, 3823, 4442
PaeR7I	CTCGAG	2 cut(s)	1146, 3524
PasI	CCCWGGG	1 cut(s)	4775
PceI	AGGCCT	1 cut(s)	533
PciI	ACATGT	3 cut(s)	1231, 1549, 3544
PciSI	GCTCTTC	1 cut(s)	2548
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 162, 240
PctI	GAATGC	1 cut(s)	3832
PdmI	GAANNNNTTC	1 cut(s)	1395
PflFI	GACNNNGTC	1 cut(s)	158
PflMI	CCANNNNNTGG	4 cut(s)	2164, 3893, 3983, 4789
PfoI	TCCNGGA	3 cut(s)	2565, 2682, 5547
PleI	GAGTC	5 cut(s)	1526, 3193, 3953, 4486, 5348
PpsI	GAGTC	5 cut(s)	1526, 3193, 3953, 4486, 5348
PpuMI	RGGWCCY	1 cut(s)	445
PscI	ACATGT	3 cut(s)	1231, 1549, 3544
PshBI	ATTAAT	2 cut(s)	1868, 2274
Psp124BI	GAGCTC	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	445
PspEI	GGTNACC	1 cut(s)	2074
PspPPI	RGGWCCY	1 cut(s)	445
PspXI	VCTCGAGB	1 cut(s)	1146
PstNI	CAGNNNCTG	3 cut(s)	1907, 3094, 3395
PsyI	GACNNNGTC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	577
RsaI	GTAC	7 cut(s)	1429, 2331, 2479, 2770, 2808, 3563, 5439
RsaNI	GTAC	7 cut(s)	1428, 2330, 2478, 2769, 2807, 3562, 5438
RseI	CAYNNNNRTG	3 cut(s)	1590, 3927, 3945
SacI	GAGCTC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	2548
ScaI	AGTACT	1 cut(s)	2479
SchI	GAGTC	5 cut(s)	1526, 3194, 3953, 4487, 5349
SduI	GDGCHC	6 cut(s)	191, 329, 2129, 2832, 3616, 5127
SfcI	CTRYAG	3 cut(s)	2775, 3036, 4941
Sfr274I	CTCGAG	2 cut(s)	1146, 3524
SinI	GGWCC	8 cut(s)	126, 445, 706, 2680, 3250, 3322, 3917, 4780
SlaI	CTCGAG	2 cut(s)	1146, 3524
SmiMI	CAYNNNNRTG	3 cut(s)	1590, 3927, 3945
SmlI	CTYRAG	3 cut(s)	953, 1146, 3524
SmoI	CTYRAG	3 cut(s)	953, 1146, 3524
SpeI	ACTAGT	3 cut(s)	481, 5068, 5705
SseBI	AGGCCT	1 cut(s)	533
SsiI	CCGC	8 cut(s)	120, 892, 3189, 3211, 4237, 4931, 5010, 5434
SspI	AATATT	3 cut(s)	1090, 3508, 5599
SstI	GAGCTC	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	533
StyI	CCWWGG	8 cut(s)	135, 739, 2012, 2158, 2405, 2820, 4888, 5042
TaiI	ACGT	3 cut(s)	162, 1341, 5257
TatI	WGTACW	4 cut(s)	2329, 2477, 2806, 3561
TauI	GCSGC	2 cut(s)	122, 5012
TseI	GCWGC	9 cut(s)	145, 574, 803, 866, 1856, 2046, 2168, 2602, 4928
TspGWI	ACGGA	4 cut(s)	646, 1751, 3314, 3818
Tth111I	GACNNNGTC	1 cut(s)	158
Van91I	CCANNNNNTGG	4 cut(s)	2164, 3893, 3983, 4789
VpaK11BI	GGWCC	8 cut(s)	126, 445, 706, 2680, 3250, 3322, 3917, 4780
VspI	ATTAAT	2 cut(s)	1868, 2274
XagI	CCTNNNNNAGG	1 cut(s)	27
XceI	RCATGY	5 cut(s)	1235, 1553, 3548, 3823, 4442
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2089, 3235
XhoI	CTCGAG	2 cut(s)	1146, 3524
XmaJI	CCTAGG	1 cut(s)	5042
XmiI	GTMKAC	1 cut(s)	4884
XmnI	GAANNNNTTC	1 cut(s)	1395
ZraI	GACGTC	2 cut(s)	160, 5255
ZrmI	AGTACT	1 cut(s)	2479
Zsp2I	ATGCAT	2 cut(s)	2949, 3049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.