Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006835

Physical Location & Seq

Genomic Coordinates Reverse (-)

24367088 .. 24385378

Gene Structure 18291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44383

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5886 bp

ATGGCACCGTCGTCCAAAAAACCTCAGGGAGGGAATAACAAGAATCCCAGAGACGCCACAAAGTTCAACAAATCCTCCAAAAAACCTTTCAAACCAAACAAGGATCACAACAACGCCGCCAGGTCCGAAGCCATGGCTTTGCAGCTCGAGGACGACGTCCCCGACTTCCCCAGAGGTGGAGGGAGCTCTTTGAATCGAAAAGAACGCGACGAAATTCGGGCGGAAGTTGATGCCGAATTCGAGGCAGAGGAGAGGGAGATGAAGAAGAAAGGGAAGAAGAAAAGGGTGCCGAAGGACAGCCTTGTAAACGAGGACGAAATGGGCTCGCTTTTCGGCGATGGCATCACTGGAAAACTACCTAGATATGCAAACAAGATCACTTTGAAGAATATATCTCCTGGGATGAGGGTTTGGGGAGTTGTTGCCGAAGTGAATGAAAAGGACCTTGTAATCAGTCTTCCAGGGGGCTTGCGTGGACTAGTTCGAGCGTCTGATGCTTTTGATCCTATTCTGGATGATGAAACTGAGGCCTTAGCAGATAGTGTCCTCCCTAGCATATTCCGGATAGGGCAGCTGGTATCTTGCATTGTGTTGCAATTGGATGAGGATAAGAAAGAGAAAGGGAAACGGAAGATCTGGCTTTCTTTGCGCCTCTCTTTGTTGCATAAAGGCTTCACTTTGGATTCTGTTCAAGAAGGCATGGTCCTTACAGCCTATATTAAAAGCATCGAAGACCATGGTTACATTCTTCATTTTGGTTTATCTTCATTCACGGGGTTTTTGCCAAAAAATAGCCAAGCTGACAGCAAGGTTCAAGTGAGCAGTGGTCAACTGCTTCAAGCTGCTGTTAGAAGAGTTGATAAAACCCGCAAGGTAGTTCATATGAGTTCTGACCCAGAGATGGTGTCAAAGTGTGTGACCAAAGATCTCAAGGGAATTTCAATTGATCTACTTGTTCCGGGGATGATGGTCAATGCTCGTGTGTTATCCACCCTTGAAAATGGGGTTATGTTATCATTTCTTACTTATTTTACTGGAACTGTTGATATATTTCATCTGCAAAATATTTACCCTACTACAAACTGGAAGGAAGATTACAATCAAAACAAGAAGCTCAATGCTCGAGTATTATTTGTCGATCCTTCAACTAGAGCTGTTGGTTTGACACTAAATCCACATCTTGTTCGCAACAAGGCTCCTCCTTCACATGTCAAAATTGGAGATATATGTGACGATGCAAAGGTAGTGAGGGTTGATAGAGGATTGGGCCTTCTGCTTGAAATACCATCTACTCAAGTTTCAACTCCGGCATACGTTAGTATATCTGATGTGGCTGAAGAAGTTCGGAAGCTTGAAAAGAAGTTCAAGGAAGGTACTCGTGTTCGTGTCAGAATTCTTGGGTTTAGGCACTTGGAAGGGCTTGCCACAGGGATTTTGAAGGCAAGTGCATTTGAAGGGTCAGTTTTCACTCACTCTGATGTCAAACCTGGGATGGTTGTGAGAGGTAAAATAATAGCTGTTGACAGCTTTGGGGCTATCGTGCAATTCCCTGGTGGTGTGAAGGCTCTTTGTCCTCTTACTCATATGTCTGAATTTGAAATTGCAAAGCCCAGAAAAAAATTTAAGGTTGGGGCTGAACTTGTGTTCCGTGTGCTTGGTTGCAAGTCCAAGAGAATAACTGTTACACACAAGAAAACACTTGTAAAGTCAAAACTAGGGATTCTCAGTTCATATGCTGATGCTGCTGATGGATTAATAACACATGGGTGGATAAGAAAGATTGAAGAACGTGGCTGCTTTGTCCATTTTTACAATGGAGTCCAAGGATTTGCCCCAAGGCTAGGCCCTTACTACTTGAAACTTATTTATTTATCTCCTTGTGTGGACACCTTATTGAATATCCAAACATTTCTACAAAAGGGTTGCTCTACGATATCTGAACTCGGACTGGAGCCAGGATCTGACCCAAGTTCAATGTATCATGTTGGACAAGTTATCAAATGTAGAGTTATCGGCTCTAATGCTACATCGAGACGAATCAAACTTAGCTTGATAATACAGCCTCCAAGGGTTTCTGAGGATGATATGGCGAAGTTGGGCAGCCTGGTTTCAGGAGTTGTTGACCGGGTAACCCCCAATGCTGTCATGGTTTATGTTAATGCAAAAGGTTACTCAATGGGCACAATTTTTACAGACCACTTGGCAGATCACCATGGGCTGGCTGCTTTGATGAAGTCAGTATTGAAGCCTGGTTATGAATTTGATCAATTATTGGTTTTAGACACTGAAGGCAACAATTTGATCCTATCTGCAAAACATTCTCTGATTAATTCAGCTCCCATGCTTCCTTCAGAAGTCAGTCAAGTTCATCCTAATACGGTAGTACATGGCTACATTTGTAACTTAATTGACACTGGGTGCTTTGTTCGCTTTCTTGGGCGTGTGACTGGTTTCTCCCCAAGGCACAAGGCAATGGATGACCATAAAGGAGATCTTTCAGAAGCCTATTACATTGGACAGTCTGTTCGGAGTACTATACTCGATGTCAATAGTGAAACAGGTAGGATAACACTATCATTGAAGCAGTCATCTTGCTCTTCAACAGATGCCTCCTTTATCCGGGAATACTTTATTTCAGAGGAGAAGATTGCAAAGCTGCAAGTGTTGGATTCAAAAGAATCCAAATCAGATTGGTCAGAAGGATTTTCCATTGGCAGTGTTGTTGAAGGGAAGGTCCAGGAGGCAAAGGACATTGGAGTTGTTGTCAGCTTTGAGAAATATAATGATGTTTTCGGTTTCATCACGCAGTATCAATTAGCTGGTACTACTGTAGAAACAGGCTCCATTGTTCGAGCAGTTGTACTTGATGTTGCCAAGGCAGAGCACCTTGTTGACTTATCGCTCAAACCAGAATTCATTACTAACTTAAAACAAGAAAGCTCTAAGAGCCAAACTCATATGAAGAAACGAAGAAGAGAAGTCTCGGATGATCCGGAGATGCATGAGACCGTAAATGCTGTGGTTGAGATTGTGAAGGAGAATTACCTGGTTCTTTCTATCCCAAAGTATAACTATGCTGTAGGATATGCATCAATTTCTGACTACAACACTCAAAAGTTTCCTCAGAAACAGTTTCTCAATGGACAAAGTGTCAATGCTACTGTCATGGCCCTTCCAAGCCCTACAACCGCTGGGAGATTGCTTTTGCTACTTAATTCTTTGAGTGAGTCCGCTGATACTTCCAGTTCAAAGCGGGCAAAGAAGAAATCCAGTTACAAAGTGGGATCTGTGGTCCAGGCAGAGATAACTGAAATAAAGGCTCTTGAACTAAGATTGAAGTTTGGAATCGGCTTTCATGGGCGGGTCCGTATAACAGAGGTAAATGATGATCTTTTGGAAGATCCATTTAATAACTTCAGAATTGGGCAAACAGTTACTGCAAGGATTGTTGCCAAGACTAATTATTCAGATAACAACAAAAAGGGTTTCCAGTGGGATCTGTCATTGAAACCTAGTTTGTTAACAGGTTCCTGTGAAATAGAGGAAAATATTTTGAAAGGAGATCTCGATTTCTCAGTTGGAAAACATGTCACTGGCTATGTGTACAAGGTGGATGCTGAATGGGTCTGGTTAACAATATCTCGAAATGTTAGGGCTCAGCTTTTCATTCTTGACAGCGCTTGTGAGCCTAGTGAACTTCAAGAGTTTCAGAAACGCTTTCATGTGGGAAATGCTGTATCTGGTCATGTTTTAAGTGTTAGCAAGGAGAAAAAGCTATTACGGCTGGTTTCATATCCTTTTACTCCCATCGCTGATAAAGCTGTTGATAATGAGGTGTCAAAGACGGATGCAAATGTTAGCATGTTGAATGCGACTGCTCATATTCACGAGGGATGTGTTGTAGGTGGGAGAATTATTAAAAAACTTCCAGGTGTTGGTGGATTGACTGTGCAAATTGGTCCCCACATGTATGGCAGGGTTCATTATAGTGAGCTTTCTGACTCATGGGTGTCCAACCCATTGTCTGGATATGAGGAAGGTCAATTTGTCAAATGCAAGGTCGTTGAATGTAGTCGCTCTGGACAGGGAACTTTTCACATTGACTTGTCATTACGTTCTTCTTTAGTTGGCACACTTTGTCAAGATTCCAATGAACCTGACAATGACAAGCATACTCATACCGAAAGGCCAGAAAAGATTGATGATCTGAAACCTAATATGGTCATACAGGGTTATGTGAAAAATGTTTCATCAAAAGGATGTTTTATTTTACTTTCGCGGAAGCTTGATGCCAAAATTCTTGTCTCCAATTTATCCGATGGATATGTTGATGATCCTGAAAAGGAATTCCCAGTTGGAAAACTTGTTACCGGCAGGGTGTCATCTGTGGAGCCTTTATCAAAGAGAGTTGAAGTTACCTTGAAGTCACTGAGTGCAAGCAGTTTGCCACAATCTGCAAGGAATAATTTGGATAGCTTGCATGTCGGAGATATTATCTCTGGCAGGGTAAAACGAGTTGAGTCATATGGATTATTCATCACAATTGACAATACAAATGTGGTTGGATTATGCCATGTGTCAGAGCTTGCAGAAGATAAGAAGGACAATTTTGAAACTAAATACAAAACAGGAGAGAGGGTGTCAGCAAAAGTATTGAAGGTGGACAAGGAGAGGCACCGAGTTTCTCTGGGAATGAAGGATTTGTATATTATGGATAGCGACCACACACCTCCAAAACAAGATCTTGATGAACCTATCAGACAGACTGATTTGGTGGATGATTCTAAGTCAGTTATGTGTCCTGTTGGCAGTTTCCTTGGGGACCAGAACATGGATATTGAACATGAAAATGCAGAGTTCCAGTTTCTTGCACAAGCAGAATCAAGAGCTTTAGTTCCTCCACTTGAAGTCACTCTTGATGATGTAGACCAAGGCGATGATATTGTTAGCCAGGATCAAGAGCTTCCTGATGCGGAGGACGCTGTAGATGACAAGAAAAAGAAGCTCACGAAGAAAAAAGCCAGGGATGAGAGGGAGCGTGAGATAAGGGCTGCTGAGGAAAGATTATTGGAGAAAGATATACCTAGGACTGATGAGGAATTTGAGAAACTAGTTAGAAGTTCTCCAAATAACAGTTATGTTTGGATAAAATATATGGAATTTGTGCTCTCTATGGCTGATGTTGAGAAGGCACGCTCTATTGCTAAAAGGGCTTTGGAGACGATAAACTTTCGAGAAGAGAACGAGAAGCTCAATGTTTGGGTGGCTTATTTTAATTTGGAAAGCAAATATGGAAGTCCTCCAGAGGAGGCTGTAATGAAAGTCTTCCAAAAAGCGTTGCAGTATAATGATCCCAAAAAGGTTCATCTAGCACTCTTGGGAGTCTTTGAGAGGTCTGAGCAACACAAGTTGGCTGATGAACTTGCTGATAGCATGATTAAGAGGTTTAAGAAGTCTTGCAAGGTTTGGCTAAGGCGGGTACAGAGGCTCTTGGTGCAACAGCAGGATGGGGTTCAGGATTTTGTCTCTCGTGCTGAAAAGATCCTTCCTAAGCATAAGCATATCAAATTCTTGTCACAGACAGCCATCCTGGAGTTCAAATGTGGGAATCCAGAGAGAGGGCGCTCCATGTTTGAAAATATTTTGAGGCAAAACCCGAAGAGAACAGACTTGTGGAGTGTTTATCTTGATCAAGAAATTCGACTTGGAGAGACTGATCTGATTCGTGCATTGTTTGAGAGGGCAACTAGTTTGAGCCTACCAGCTAAAAAGATGAAATTCTTGTTCAAAAAATATCTGGAATATGAGGAGCGTCACGGTAACGAAGGGAGGGCCAATTACGTGAAACAGAAGGCAATGAGTTATGTTGAGAATACAGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0000462 GO:0000466 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1 Suf

Protein Analysis

1961

Amino Acids

218.97

Weight (kDa)

8.64

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1_RRP5	PF23459	132 - 205	1.9e-06	RRP5 S1 domain
S1_RRP5	PF23459	319 - 390	1.1e-06	RRP5 S1 domain
OB_RRP5_4th	PF24685	399 - 489	4.3e-40	RRP5 OB-fold domain
S1	PF00575	494 - 558	3.8e-08	S1 RNA binding domain
S1	PF00575	791 - 861	1.9e-07	S1 RNA binding domain
OB_RRP5	PF24682	986 - 1073	7.4e-39	RRP5 OB-fold domain
S1_RRP5	PF23459	1403 - 1473	5.2e-07	RRP5 S1 domain
S1	PF00575	1495 - 1566	2.6e-16	S1 RNA binding domain
HAT_Syf1_CNRKL1_C	PF23231	1709 - 1958	3.9e-11	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
Suf	PF05843	1859 - 1957	1.6e-06	Suppressor of forked protein (Suf)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11964 AT3G11964
fragaria_vesca	FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470
malus_domestica	MD12G1051100.v1.1
prunus_persica	Prupe.7G085700_v2.0.a1 Prupe.7G085700_v2.0.a1
pyrus_communis	pycom12g04550
rosa_chinensis	RchiOBHm_Chr3g0478661
rosa_laevigata	RLG00000023635
rosa_multiflora	Rmu_sc0002454.1_g000002 Rmu_sc0023704.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403220
rosa_rugosa	Rorug03G0166800 Rorug03G0166800 Rorug03G0166900
rosa_samantha	Rh3AG219000 Rh3BG250700 Rh3CG247500 Rh3DG243800
rosa_wichuraiana	Rw3G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AccB1I	GGYRCC	3 cut(s)	4, 286, 4674
AccB7I	CCANNNNNTGG	4 cut(s)	2218, 3935, 4025, 4831
AccI	GTMKAC	1 cut(s)	4926
AccII	CGCG	2 cut(s)	207, 4279
AccIII	TCCGGA	2 cut(s)	561, 2992
AcuI	CTGAAG	4 cut(s)	1356, 2307, 2334, 3400
AcyI	GRCGYC	2 cut(s)	54, 156
AdeI	CACNNNGTG	2 cut(s)	2418, 4433
AfaI	GTAC	7 cut(s)	1375, 2385, 2533, 2824, 2862, 3605, 5481
AfeI	AGCGCT	1 cut(s)	3679
AflIII	ACRYGT	3 cut(s)	1207, 3586, 3966
AhdI	GACNNNNNGTC	1 cut(s)	3149
AhlI	ACTAGT	3 cut(s)	478, 5110, 5747
AjuI	GAANNNNNNNTTGG	6 cut(s)	71, 103, 4338, 4370, 5688, 5720
AleI	CACNNNNGTG	1 cut(s)	1765
AloI	GAACNNNNNNTCC	6 cut(s)	1629, 1661, 1711, 1743, 2508, 2540
Alw21I	GWGCWC	3 cut(s)	188, 2886, 5169
Alw26I	GTCTC	8 cut(s)	45, 2026, 2986, 2999, 4309, 5213, 5530, 5705
AlwNI	CAGNNNCTG	2 cut(s)	1961, 3437
Ama87I	CYCGRG	2 cut(s)	146, 1122
Aor13HI	TCCGGA	2 cut(s)	561, 2992
Aor51HI	AGCGCT	1 cut(s)	3679
AoxI	GGCC	6 cut(s)	528, 1267, 1843, 3168, 4187, 5832
ApeKI	GCWGC	9 cut(s)	142, 571, 842, 1742, 1794, 2100, 2222, 2656, 5051
ArsI	GACNNNNNNTTYG	6 cut(s)	2508, 2540, 4044, 4076, 4287, 4319
AseI	ATTAAT	2 cut(s)	1754, 2328
Asp700I	GAANNNNTTC	2 cut(s)	1341, 5324
AspA2I	CCTAGG	1 cut(s)	5084
AspLEI	GCGC	3 cut(s)	651, 3680, 5625
AsuC2I	CCSGG	3 cut(s)	960, 2126, 2621
AsuHPI	GGTGA	1 cut(s)	2201
AvaI	CYCGRG	2 cut(s)	146, 1122
AvaII	GGWCC	8 cut(s)	123, 442, 703, 2734, 3292, 3364, 3959, 4822
AvrII	CCTAGG	1 cut(s)	5084
AxyI	CCTNAGG	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	2183
BaeI	ACNNNNGTAYC	4 cut(s)	1365, 1398, 2814, 2847
BanI	GGYRCC	3 cut(s)	4, 286, 4674
BanII	GRGCYC	3 cut(s)	188, 326, 3658
BarI	GAAGNNNNNNTAC	6 cut(s)	441, 473, 1079, 1111, 3026, 3058
BauI	CACGAG	4 cut(s)	978, 1377, 3887, 5529
BbsI	GAAGAC	3 cut(s)	449, 738, 5317
Bbv12I	GWGCWC	3 cut(s)	188, 2886, 5169
BbvCI	CCTCAGC	1 cut(s)	5055
BbvI	GCAGC	9 cut(s)	154, 583, 829, 1729, 1781, 2112, 2209, 2643, 5038
BceAI	ACGGC	1 cut(s)	3797
BclI	TGATCA	2 cut(s)	2263, 5689
BcnI	CCSGG	3 cut(s)	960, 2126, 2621
BcoDI	GTCTC	8 cut(s)	45, 2026, 2986, 2999, 4309, 5213, 5530, 5705
BcuI	ACTAGT	3 cut(s)	478, 5110, 5747
BfmI	CTRYAG	3 cut(s)	2829, 3078, 4983
BfoI	RGCGCY	2 cut(s)	3681, 5626
BglII	AGATCT	5 cut(s)	633, 925, 2491, 3562, 4741
BlnI	CCTAGG	1 cut(s)	5084
BlpI	GCTNAGC	1 cut(s)	3657
BmcAI	AGTACT	1 cut(s)	2533
Bme18I	GGWCC	8 cut(s)	123, 442, 703, 2734, 3292, 3364, 3959, 4822
BmeRI	GACNNNNNGTC	1 cut(s)	3149
BmeT110I	CYCGRG	2 cut(s)	146, 1122
BmrI	ACTGGG	2 cut(s)	2424, 4346
BmuI	ACTGGG	2 cut(s)	2424, 4346
BpiI	GAAGAC	3 cut(s)	449, 738, 5317
BplI	GAGNNNNNCTC	2 cut(s)	2938, 2970
BpmI	CTGGAG	3 cut(s)	1970, 5286, 5612
Bpu10I	CCTNAGC	4 cut(s)	532, 5055, 5471, 5550
Bpu1102I	GCTNAGC	1 cut(s)	3657
BpuEI	CTTGAG	2 cut(s)	914, 1278
BpuMI	CCSGG	3 cut(s)	960, 2126, 2621
BsaAI	YACGTR	1 cut(s)	5842
BsaBI	GATNNNNATC	2 cut(s)	1098, 3088
BsaHI	GRCGYC	2 cut(s)	54, 156
BsaI	GGTCTC	1 cut(s)	2999
BsaWI	WCCGGW	2 cut(s)	561, 2992
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 2748, 2778, 4623, 4653
Bse118I	RCCGGY	1 cut(s)	4370
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	2 cut(s)	2478, 5862
Bse8I	GATNNNNATC	2 cut(s)	1098, 3088
BseAI	TCCGGA	2 cut(s)	561, 2992
BseJI	GATNNNNATC	2 cut(s)	1098, 3088
BseMI	GCAATG	2 cut(s)	2478, 5862
BseRI	GAGGAG	5 cut(s)	263, 1188, 2654, 5321, 5822
BseSI	GKGCMC	1 cut(s)	2183
BseXI	GCAGC	9 cut(s)	154, 583, 829, 1729, 1781, 2112, 2209, 2643, 5038
BseYI	CCCAGC	1 cut(s)	3191
Bsh1236I	CGCG	2 cut(s)	207, 4279
BshFI	GGCC	6 cut(s)	530, 1269, 1845, 3170, 4189, 5834
BshNI	GGYRCC	3 cut(s)	4, 286, 4674
BsiHKAI	GWGCWC	3 cut(s)	188, 2886, 5169
BsiHKCI	CYCGRG	2 cut(s)	146, 1122
BsiSI	CCGG	7 cut(s)	562, 959, 1307, 2125, 2620, 2993, 4371
BslFI	GGGAC	3 cut(s)	143, 3945, 4835
BsmAI	GTCTC	8 cut(s)	45, 2026, 2986, 2999, 4309, 5213, 5530, 5705
BsmBI	CGTCTC	3 cut(s)	45, 2026, 5213
BsmFI	GGGAC	3 cut(s)	143, 3945, 4835
BsmI	GAATGC	1 cut(s)	3874
BsnI	GGCC	6 cut(s)	530, 1269, 1845, 3170, 4189, 5834
Bso31I	GGTCTC	1 cut(s)	2999
BsoBI	CYCGRG	2 cut(s)	146, 1122
Bsp1286I	GDGCHC	6 cut(s)	188, 326, 2183, 2886, 3658, 5169
Bsp13I	TCCGGA	2 cut(s)	561, 2992
Bsp1407I	TGTACA	1 cut(s)	3603
Bsp1720I	GCTNAGC	1 cut(s)	3657
Bsp19I	CCATGG	3 cut(s)	132, 736, 2212
BspANI	GGCC	6 cut(s)	530, 1269, 1845, 3170, 4189, 5834
BspEI	TCCGGA	2 cut(s)	561, 2992
BspFNI	CGCG	2 cut(s)	207, 4279
BspQI	GCTCTTC	1 cut(s)	2602
BspT107I	GGYRCC	3 cut(s)	4, 286, 4674
BspTNI	GGTCTC	1 cut(s)	2999
BsrDI	GCAATG	2 cut(s)	2478, 5862
BsrFI	RCCGGY	1 cut(s)	4370
BsrGI	TGTACA	1 cut(s)	3603
BssAI	RCCGGY	1 cut(s)	4370
BssNI	GRCGYC	2 cut(s)	54, 156
BssSI	CACGAG	4 cut(s)	978, 1377, 3887, 5529
Bst2BI	CACGAG	4 cut(s)	978, 1377, 3887, 5529
Bst6I	CTCTTC	5 cut(s)	847, 2602, 2968, 5232, 5654
BstACI	GRCGYC	2 cut(s)	54, 156
BstAUI	TGTACA	1 cut(s)	3603
BstBAI	YACGTR	1 cut(s)	5842
BstC8I	GCNNGC	9 cut(s)	326, 470, 1422, 2220, 3255, 4438, 4478, 4587, 5194
BstDSI	CCRYGG	3 cut(s)	132, 736, 2212
BstEII	GGTNACC	1 cut(s)	2128
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	207, 4279
BstH2I	RGCGCY	2 cut(s)	3681, 5626
BstHHI	GCGC	3 cut(s)	651, 3680, 5625
BstMAI	GTCTC	8 cut(s)	45, 2026, 2986, 2999, 4309, 5213, 5530, 5705
BstNSI	RCATGY	5 cut(s)	1211, 3590, 3865, 3970, 4484
BstPI	GGTNACC	1 cut(s)	2128
BstSFI	CTRYAG	3 cut(s)	2829, 3078, 4983
BstSLI	GKGCMC	1 cut(s)	2183
BstUI	CGCG	2 cut(s)	207, 4279
BstV1I	GCAGC	9 cut(s)	154, 583, 829, 1729, 1781, 2112, 2209, 2643, 5038
BstV2I	GAAGAC	3 cut(s)	449, 738, 5317
BstXI	CCANNNNNNTGG	1 cut(s)	3971
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	6 cut(s)	530, 1269, 1845, 3170, 4189, 5834
BtgI	CCRYGG	3 cut(s)	132, 736, 2212
BtgZI	GCGATG	3 cut(s)	351, 3793, 4950
BtsI	GCAGTG	2 cut(s)	829, 2722
BtsIMutI	CAGTG	8 cut(s)	345, 829, 2283, 2412, 2722, 3497, 3591, 4427
Cac8I	GCNNGC	9 cut(s)	326, 470, 1422, 2220, 3255, 4438, 4478, 4587, 5194
CaiI	CAGNNNCTG	2 cut(s)	1961, 3437
CfoI	GCGC	3 cut(s)	651, 3680, 5625
Cfr10I	RCCGGY	1 cut(s)	4370
CseI	GACGC	4 cut(s)	62, 477, 4988, 5801
CsiI	ACCWGGT	1 cut(s)	3045
Csp6I	GTAC	7 cut(s)	1374, 2384, 2532, 2823, 2861, 3604, 5480
CviQI	GTAC	7 cut(s)	1374, 2384, 2532, 2823, 2861, 3604, 5480
DraIII	CACNNNGTG	2 cut(s)	2418, 4433
DriI	GACNNNNNGTC	1 cut(s)	3149
Eam1104I	CTCTTC	5 cut(s)	847, 2602, 2968, 5232, 5654
Eam1105I	GACNNNNNGTC	1 cut(s)	3149
EarI	CTCTTC	5 cut(s)	847, 2602, 2968, 5232, 5654
EciI	GGCGGA	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	530
Eco24I	GRGCYC	3 cut(s)	188, 326, 3658
Eco31I	GGTCTC	1 cut(s)	2999
Eco32I	GATATC	1 cut(s)	1935
Eco47I	GGWCC	8 cut(s)	123, 442, 703, 2734, 3292, 3364, 3959, 4822
Eco47III	AGCGCT	1 cut(s)	3679
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	4 cut(s)	1356, 2307, 2334, 3400
Eco81I	CCTNAGG	1 cut(s)	24
Eco88I	CYCGRG	2 cut(s)	146, 1122
Eco91I	GGTNACC	1 cut(s)	2128
EcoICRI	GAGCTC	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	442, 1844
EcoO65I	GGTNACC	1 cut(s)	2128
EcoRI	GAATTC	4 cut(s)	236, 1392, 2912, 4346
EcoRV	GATATC	1 cut(s)	1935
EcoT22I	ATGCAT	2 cut(s)	3003, 3091
EcoT38I	GRGCYC	3 cut(s)	188, 326, 3658
Esp3I	CGTCTC	3 cut(s)	45, 2026, 5213
FalI	AAGNNNNNCTT	4 cut(s)	2478, 2510, 4899, 4931
FaqI	GGGAC	3 cut(s)	143, 3945, 4835
FauI	CCCGC	4 cut(s)	875, 3246, 3354, 5469
FauNDI	CATATG	5 cut(s)	882, 1584, 1732, 2958, 4525
FbaI	TGATCA	2 cut(s)	2263, 5689
FblI	GTMKAC	1 cut(s)	4926
FriOI	GRGCYC	3 cut(s)	188, 326, 3658
GlaI	GCGC	3 cut(s)	650, 3679, 5624
GsaI	CCCAGC	1 cut(s)	3195
GsuI	CTGGAG	3 cut(s)	1970, 5286, 5612
HaeII	RGCGCY	2 cut(s)	3681, 5626
HaeIII	GGCC	6 cut(s)	530, 1269, 1845, 3170, 4189, 5834
HapII	CCGG	7 cut(s)	562, 959, 1307, 2125, 2620, 2993, 4371
HgaI	GACGC	4 cut(s)	62, 477, 4988, 5801
HhaI	GCGC	3 cut(s)	651, 3680, 5625
Hin1I	GRCGYC	2 cut(s)	54, 156
Hin6I	GCGC	3 cut(s)	649, 3678, 5623
HinP1I	GCGC	3 cut(s)	649, 3678, 5623
HincII	GTYRAC	6 cut(s)	830, 1522, 2122, 2893, 3522, 3633
HindII	GTYRAC	6 cut(s)	830, 1522, 2122, 2893, 3522, 3633
HindIII	AAGCTT	2 cut(s)	1349, 4283
HpaI	GTTAAC	2 cut(s)	3522, 3633
HpaII	CCGG	7 cut(s)	562, 959, 1307, 2125, 2620, 2993, 4371
HphI	GGTGA	1 cut(s)	2201
Hpy99I	CGWCG	3 cut(s)	13, 158, 212
HpyCH4IV	ACGT	5 cut(s)	156, 1314, 1789, 4114, 5841
HpySE526I	ACGT	5 cut(s)	156, 1314, 1789, 4114, 5841
Hsp92I	GRCGYC	2 cut(s)	54, 156
HspAI	GCGC	3 cut(s)	649, 3678, 5623
Kpn2I	TCCGGA	2 cut(s)	561, 2992
Ksp22I	TGATCA	2 cut(s)	2263, 5689
KspAI	GTTAAC	2 cut(s)	3522, 3633
LguI	GCTCTTC	1 cut(s)	2602
LmnI	GCTCC	9 cut(s)	183, 1201, 1951, 2341, 2846, 4390, 5035, 5630, 5809
Lsp1109I	GCAGC	9 cut(s)	154, 583, 829, 1729, 1781, 2112, 2209, 2643, 5038
MabI	ACCWGGT	1 cut(s)	3045
MaeII	ACGT	5 cut(s)	156, 1314, 1789, 4114, 5841
MfeI	CAATTG	3 cut(s)	596, 942, 4542
MhlI	GDGCHC	6 cut(s)	188, 326, 2183, 2886, 3658, 5169
MlyI	GAGTC	5 cut(s)	1827, 3236, 3995, 4529, 5391
MmeI	TCCRAC	7 cut(s)	1966, 2646, 3559, 4038, 4336, 4465, 4543
Mph1103I	ATGCAT	2 cut(s)	3003, 3091
MroI	TCCGGA	2 cut(s)	561, 2992
MroXI	GAANNNNTTC	2 cut(s)	1341, 5324
MslI	CAYNNNNRTG	5 cut(s)	1476, 1765, 3969, 3987, 4848
MspA1I	CMGCKG	3 cut(s)	574, 3191, 3233
MspI	CCGG	7 cut(s)	562, 959, 1307, 2125, 2620, 2993, 4371
MunI	CAATTG	3 cut(s)	596, 942, 4542
Mva1269I	GAATGC	1 cut(s)	3874
MvnI	CGCG	2 cut(s)	207, 4279
NciI	CCSGG	3 cut(s)	960, 2126, 2621
NcoI	CCATGG	3 cut(s)	132, 736, 2212
NdeI	CATATG	5 cut(s)	882, 1584, 1732, 2958, 4525
NmuCI	GTSAC	8 cut(s)	916, 1229, 2443, 3589, 4425, 4909, 5574, 5813
NsiI	ATGCAT	2 cut(s)	3003, 3091
NspI	RCATGY	5 cut(s)	1211, 3590, 3865, 3970, 4484
OliI	CACNNNNGTG	1 cut(s)	1765
PaeR7I	CTCGAG	2 cut(s)	146, 1122
PceI	AGGCCT	1 cut(s)	530
PciI	ACATGT	3 cut(s)	1207, 3586, 3966
PciSI	GCTCTTC	1 cut(s)	2602
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 159
PctI	GAATGC	1 cut(s)	3874
PdmI	GAANNNNTTC	2 cut(s)	1341, 5324
PflFI	GACNNNGTC	1 cut(s)	155
PflMI	CCANNNNNTGG	4 cut(s)	2218, 3935, 4025, 4831
PfoI	TCCNGGA	3 cut(s)	2619, 2736, 5589
PleI	GAGTC	5 cut(s)	1826, 3235, 3995, 4528, 5390
PpsI	GAGTC	5 cut(s)	1826, 3235, 3995, 4528, 5390
Ppu21I	YACGTR	1 cut(s)	5842
PpuMI	RGGWCCY	1 cut(s)	442
PscI	ACATGT	3 cut(s)	1207, 3586, 3966
PshBI	ATTAAT	2 cut(s)	1754, 2328
Psp124BI	GAGCTC	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	442
PspEI	GGTNACC	1 cut(s)	2128
PspFI	CCCAGC	1 cut(s)	3191
PspPPI	RGGWCCY	1 cut(s)	442
PspXI	VCTCGAGB	2 cut(s)	146, 1122
PstNI	CAGNNNCTG	2 cut(s)	1961, 3437
PsyI	GACNNNGTC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	574
RsaI	GTAC	7 cut(s)	1375, 2385, 2533, 2824, 2862, 3605, 5481
RsaNI	GTAC	7 cut(s)	1374, 2384, 2532, 2823, 2861, 3604, 5480
RseI	CAYNNNNRTG	5 cut(s)	1476, 1765, 3969, 3987, 4848
SacI	GAGCTC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	2602
ScaI	AGTACT	1 cut(s)	2533
SchI	GAGTC	5 cut(s)	1827, 3236, 3995, 4529, 5391
SduI	GDGCHC	6 cut(s)	188, 326, 2183, 2886, 3658, 5169
SexAI	ACCWGGT	1 cut(s)	3045
SfcI	CTRYAG	3 cut(s)	2829, 3078, 4983
Sfr274I	CTCGAG	2 cut(s)	146, 1122
SinI	GGWCC	8 cut(s)	123, 442, 703, 2734, 3292, 3364, 3959, 4822
SlaI	CTCGAG	2 cut(s)	146, 1122
SmiMI	CAYNNNNRTG	5 cut(s)	1476, 1765, 3969, 3987, 4848
SmlI	CTYRAG	4 cut(s)	146, 929, 1122, 1293
SmoI	CTYRAG	4 cut(s)	146, 929, 1122, 1293
SpeI	ACTAGT	3 cut(s)	478, 5110, 5747
SseBI	AGGCCT	1 cut(s)	530
SspI	AATATT	3 cut(s)	1066, 3550, 5641
SstI	GAGCTC	1 cut(s)	188
StuI	AGGCCT	1 cut(s)	530
TaiI	ACGT	5 cut(s)	159, 1317, 1792, 4117, 5844
TatI	WGTACW	4 cut(s)	2383, 2531, 2860, 3603
TauI	GCSGC	1 cut(s)	119
TscAI	CASTG	8 cut(s)	352, 829, 2290, 2419, 2722, 3497, 3598, 4434
TseFI	GTSAC	8 cut(s)	916, 1229, 2443, 3589, 4425, 4909, 5574, 5813
TseI	GCWGC	9 cut(s)	142, 571, 842, 1742, 1794, 2100, 2222, 2656, 5051
Tsp45I	GTSAC	8 cut(s)	916, 1229, 2443, 3589, 4425, 4909, 5574, 5813
TspGWI	ACGGA	4 cut(s)	643, 1637, 3356, 3860
TspRI	CASTG	8 cut(s)	352, 829, 2290, 2419, 2722, 3497, 3598, 4434
Tth111I	GACNNNGTC	1 cut(s)	155
Van91I	CCANNNNNTGG	4 cut(s)	2218, 3935, 4025, 4831
VpaK11BI	GGWCC	8 cut(s)	123, 442, 703, 2734, 3292, 3364, 3959, 4822
VspI	ATTAAT	2 cut(s)	1754, 2328
XagI	CCTNNNNNAGG	1 cut(s)	27
XceI	RCATGY	5 cut(s)	1211, 3590, 3865, 3970, 4484
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1811, 2143, 3277
XhoI	CTCGAG	2 cut(s)	146, 1122
XmaJI	CCTAGG	1 cut(s)	5084
XmiI	GTMKAC	1 cut(s)	4926
XmnI	GAANNNNTTC	2 cut(s)	1341, 5324
ZraI	GACGTC	1 cut(s)	157
ZrmI	AGTACT	1 cut(s)	2533
Zsp2I	ATGCAT	2 cut(s)	3003, 3091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.