Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023704.1

Orthogroup ID

OG0006835

Physical Location & Seq

Genomic Coordinates Forward (+)

1505 .. 2326

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023704.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atggcaccgtcgtctaaaaaacctcagggagggaataacaagaatcccagagacgctccaaagttcaacaaatcctccaaaaaacctttcaaaccaaacaaggatcacaacaacaacaacgccgccaggtccgaagccatggctttgcagctcgaaaacgacgtccctgacttccccagaggcggagggagctcattgaatcgaaaagaacgcgacgaaattcgggcggaagttgatgccgaattcgaggcagaggagagggagatgaagaagaaagggaagaagaaaagggtgccgaaggacagccttgtaaacgaggacgagatgggctcgcttttcggcgatggcatcactggaaaactacctagatatgcaaacaagatcactttgaagaatatatctcctgggatgaaggtttggggagttgttgccgaagtcaatgaaaaggaccttgtaattagtcttccagggggtttgcgtggactagttcgagcgtctgatgcttttgatcctattctggatgatgaaactgaggtaataatcagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0000462 GO:0000466 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1 Suf

Protein Analysis

182

Amino Acids

20.06

Weight (kDa)

8.98

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11964 AT3G11964
fragaria_vesca	FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470 FvH4_6g21470
malus_domestica	MD12G1051100.v1.1
prunus_persica	Prupe.7G085700_v2.0.a1 Prupe.7G085700_v2.0.a1
pyrus_communis	pycom12g04550
rosa_chinensis	RchiOBHm_Chr3g0478661
rosa_laevigata	RLG00000023635
rosa_multiflora	Rmu_sc0002454.1_g000002 Rmu_sc0023704.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403220
rosa_rugosa	Rorug03G0166800 Rorug03G0166800 Rorug03G0166900
rosa_samantha	Rh3AG219000 Rh3BG250700 Rh3CG247500 Rh3DG243800
rosa_wichuraiana	Rw3G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccB1I	GGYRCC	2 cut(s)	4, 292
AccII	CGCG	1 cut(s)	213
AciI	CCGC	3 cut(s)	123, 183, 227
AclWI	GGATC	2 cut(s)	111, 503
AcsI	RAATTY	2 cut(s)	219, 242
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	29, 182
AgsI	TTSAA	4 cut(s)	67, 91, 199, 391
AhlI	ACTAGT	1 cut(s)	484
AjnI	CCWGG	3 cut(s)	125, 403, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	2 cut(s)	151, 192
AluI	AGCT	2 cut(s)	151, 192
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	111, 503
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	219, 242
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspS9I	GGNCC	2 cut(s)	129, 448
AvaII	GGWCC	2 cut(s)	129, 448
AxyI	CCTNAGG	1 cut(s)	24
BanI	GGYRCC	2 cut(s)	4, 292
BanII	GRGCYC	2 cut(s)	194, 332
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	319, 338
BciT130I	CCWGG	3 cut(s)	127, 405, 468
BcoDI	GTCTC	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	2 cut(s)	366, 485
BisI	GCNGC	2 cut(s)	123, 149
BlsI	GCNGC	2 cut(s)	124, 150
Bme1390I	CCNGG	3 cut(s)	127, 405, 468
Bme18I	GGWCC	2 cut(s)	129, 448
BmgT120I	GGNCC	2 cut(s)	129, 448
BmiI	GGNNCC	2 cut(s)	6, 294
BmrFI	CCNGG	3 cut(s)	127, 405, 468
BmsI	GCATC	3 cut(s)	226, 357, 490
BpiI	GAAGAC	1 cut(s)	455
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	138, 404, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 182
Bse1I	ACTGG	1 cut(s)	358
Bse21I	CCTNAGG	1 cut(s)	24
BseBI	CCWGG	3 cut(s)	127, 405, 468
BseDI	CCNNGG	3 cut(s)	138, 404, 467
BseGI	GGATG	2 cut(s)	414, 526
BseLI	CCNNNNNNNGG	2 cut(s)	29, 182
BseMII	CTCAG	2 cut(s)	38, 522
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	213
BshNI	GGYRCC	2 cut(s)	4, 292
BsiHKAI	GWGCWC	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	29, 182
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	194, 332
Bsp143I	GATC	3 cut(s)	103, 381, 508
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	3 cut(s)	123, 183, 227
BspCNI	CTCAG	2 cut(s)	37, 523
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	6, 294
BspPI	GGATC	2 cut(s)	111, 503
BspT107I	GGYRCC	2 cut(s)	4, 292
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	138, 404, 467
BssMI	GATC	3 cut(s)	103, 381, 508
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	3 cut(s)	127, 405, 468
Bst4CI	ACNGT	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	24, 531
BstDSI	CCRYGG	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	414, 526
BstFNI	CGCG	1 cut(s)	213
BstKTI	GATC	3 cut(s)	106, 384, 511
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	3 cut(s)	103, 381, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 500
BstNI	CCWGG	3 cut(s)	127, 405, 468
BstSCI	CCNGG	3 cut(s)	125, 403, 466
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	455
Bsu36I	CCTNAGG	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	414, 526
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	129, 448
CseI	GACGC	2 cut(s)	62, 483
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	6 cut(s)	137, 143, 151, 192, 306, 330
CviKI_1	RGCY	6 cut(s)	137, 143, 151, 192, 306, 330
DdeI	CTNAG	2 cut(s)	24, 531
DpnI	GATC	3 cut(s)	105, 383, 510
DpnII	GATC	3 cut(s)	103, 381, 508
EciI	GGCGGA	2 cut(s)	198, 242
Ecl136II	GAGCTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	2 cut(s)	194, 332
Eco47I	GGWCC	2 cut(s)	129, 448
Eco53kI	GAGCTC	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	3 cut(s)	125, 403, 466
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	194, 332
ErhI	CCWWGG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	1 cut(s)	142
FaiI	YATR	3 cut(s)	140, 372, 398
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	123, 149
FokI	GGATG	2 cut(s)	421, 533
FriOI	GRGCYC	2 cut(s)	194, 332
Fsp4HI	GCNGC	2 cut(s)	123, 149
FspBI	CTAG	2 cut(s)	366, 485
GluI	GCNGC	2 cut(s)	123, 149
HgaI	GACGC	2 cut(s)	62, 483
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	142
HinfI	GANTC	2 cut(s)	43, 199
Hpy166II	GTNNAC	2 cut(s)	313, 482
Hpy188I	TCNGA	2 cut(s)	133, 499
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	2 cut(s)	313, 482
Hpy99I	CGWCG	3 cut(s)	13, 164, 218
HpyAV	CCTTC	2 cut(s)	292, 406
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	148, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 500
HpyF3I	CTNAG	2 cut(s)	24, 531
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	103, 381, 508
LmnI	GCTCC	2 cut(s)	61, 189
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	3 cut(s)	226, 357, 490
MaeI	CTAG	2 cut(s)	366, 485
MaeII	ACGT	1 cut(s)	162
MalI	GATC	3 cut(s)	105, 383, 510
MboI	GATC	3 cut(s)	103, 381, 508
MboII	GAAGA	6 cut(s)	280, 283, 292, 295, 403, 455
MhlI	GDGCHC	2 cut(s)	194, 332
MluCI	AATT	3 cut(s)	219, 242, 456
MseI	TTAA	1 cut(s)	547
MspR9I	CCNGG	3 cut(s)	127, 405, 468
MvaI	CCWGG	3 cut(s)	127, 405, 468
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	189, 500
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	103, 381, 508
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	6, 294
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	43, 199
PkrI	GCNGC	2 cut(s)	124, 150
PpuMI	RGGWCCY	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	3 cut(s)	125, 403, 466
PspGI	CCWGG	3 cut(s)	125, 403, 466
PspN4I	GGNNCC	2 cut(s)	6, 294
PspPI	GGNCC	2 cut(s)	129, 448
PspPPI	RGGWCCY	1 cut(s)	448
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	547
SatI	GCNGC	2 cut(s)	123, 149
Sau3AI	GATC	3 cut(s)	103, 381, 508
Sau96I	GGNCC	2 cut(s)	129, 448
ScrFI	CCNGG	3 cut(s)	127, 405, 468
SduI	GDGCHC	2 cut(s)	194, 332
SfaNI	GCATC	3 cut(s)	226, 357, 490
SinI	GGWCC	2 cut(s)	129, 448
SpeI	ACTAGT	1 cut(s)	484
Sse9I	AATT	3 cut(s)	219, 242, 456
SsiI	CCGC	3 cut(s)	123, 183, 227
SspMI	CTAG	2 cut(s)	366, 485
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	3 cut(s)	125, 403, 466
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	4 cut(s)	153, 202, 246, 490
TasI	AATT	3 cut(s)	219, 242, 456
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	43, 199
Tru1I	TTAA	1 cut(s)	547
Tru9I	TTAA	1 cut(s)	547
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	281, 425, 456, 540
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	129, 448
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	2 cut(s)	219, 242
XspI	CTAG	2 cut(s)	366, 485
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.