pycom12g04550

Protein RRP5 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
4405586 .. 4423719
18134 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g04550.13

Sequence Viewer

Length: 5787 bp
ATGGCACCGCCTTTCAAGAAACCGCAGGCCAAGAAGAAGCCCGGAGACGCTCCAAAGTTCAACAAGTCCTCCAAAAAACCGTTCAAACCAAACAAGGACCAAAACGACGACGTCAGGTCTGAAGCCGTCGCTTTGCAGCTCGAAGACGACGTCCCCGACTTCCCTAGAGGGGGAGGAAGTGCTTTGAATCGACAAGAGCGGGATGAAATTCGGGCCGAAGTCGATGCTGAATTTGAGGCTGAGGAGCGGGAGCTGAAGAAGAGGAAGAAGAAGGCGATGCAGAAGAATAGTGTCGCAACGAAGGAGGACGATTTGGGGTCGCTTTTCGGTGACGGTATTTCTGGAAAGCTACCTAAATATGCAAACAAGATTACTATGAAGAATATTTCTGCTGGAATGAAGGTCTGGGGAGTTGTCTCTGAAGTAAATGAAAAGGACCTCGTAATTAGTCTTCCAGGGGGATTGCGTGGATTAGTTCGAGCTTCTGAAGCTTTTGATCCTATTTTGGACGATGAAAATAAGGCTGTAGCAGATAGTCTCCTTCCTAGCGTATTCCATACTGGGCAGCTGGTATCTTGCATTGTATTGAAGTTAGATGAGGATAAGAAAGAGAAAGGGAAAAGGAAGATCTGGCTTTCTTTGCGCCTATCTTTGTTGCACAAGGGCTTCACTTTGGAGTCTGTTCAAGAAGGCATGGTCCTTACTGCATATGTTAAAAGCATTGAAGACCATGGTTATATTCTCCATTTTGGTTTATCTTCATTTACGGGTTTTTTGCCAAAAAAGAATGAATCTGACACCAAGGAGATTCAACTGAAAGCTGGGCAACTACTTCAAGGTGCTGTTAAAAGTGTTGATAAAATCCGCAAGGTTGTGTATTTGAATTCTGACCCAGAAACCGTGTCAAAATGTGTGACCAAGGATCTCAAGGGAATTTCAATTGATCTACTCGTTCCAGGCATGATGGTTAATGCTCGTGTGCTATCGACCCTTGAAAATGGGGTTATGTTATCATTTCTAACTTACTTTACTGGAACTGTTGATTTATTCCATCTGCAAAATAGTTGCCCTACCATAAACTGGAAGGAGGAGTACAATCAACACAAGAAGGTTAATGCTCGAATATTGTTTATTGATCCTTCAACTAGAGCTGTTGGTTTGACGCTGAATCCACATCTTGTCCATAACAAGGCTCCTCCTTCACTTGTTAAAATTGGAGACATATGTGATGACTCAAAAGTGGTGAGGGTCGACAAAGGATTGGGCCTTCTGCTTGAATTACCATCTACCCCGGTTTCAACTCCGGCATACGTTAGTATATCTGATGTGGCTGAAGAGGATGCTCGAAAGCTTGAAAAAAAGTTCAAGCTAGGTAGTCGTGTTCGTGTCAGAATTCTTGGTTTTAGACACCTGGAAGGGCTTGCGACAGGGACTTTGAAGGCCAGCGCTATGGAAGGGACAGTCTTTACTCATTCTGATGTCAAGCCTGGGATGGTGGTGAGAGGTAAAATCATAGCCGTGGACAGCTTTGGTGCTATCGTGCAATTTCCTGGTGGTGTGAAGGCACTTTGCCCTCTTACTCATATGTCTGAATTTGAAATTGCAAAGCCTGGAAAAAAATTTAAGATTGGAGCTGAACTTCTGTTCCGTGTGCTTGGTTGCAAGTCCAAGAGAATAACTGTTACACACAAGAAAACACTTGTGAAATCGAAACATGGGATTGTTAGTTCATATGCTGAGGCTGCTGACGGTTTAATCACCCATGGGTGGATAAGAAAGATTGAAGAACATGGATGCTTTGTCCATTTTTACAATGGAGTCCAAGGATTTGCTCCAAGATCTGAACTCGGATTGGAAACAGGATCTGACCCAAGTTCAATGTATCATGTTGGGCAAGTTGTCAAATGTAGAGTTATCAATTCCAATCCTACATCAAGGCGGATCAAACTTAGCTTCGTAATTAGGCCTCCAAGGGTTTCTGAGGATGATGTAGCCAAGTTGGGTTGCCTTGTTTCTGGAGTTGTTGATCGAGTAACCCCCAGTGCTATTTATGTTAATGGAAAAGGTTACTCGATGGGAACAATTTTTACCGATCACTTGTCAGATCACCACGGGCTTGCTGCTTTGATGAGGTCAGTTTTGAAGCCTGGATATGAATTTGATCAATTGTTAGTGCTAGACATTGAAGGGAACAATTTGATCCTTTCTGCAAAATATTCTTTGATTAATTCAGTTCAGCAGCTTCCCTCAGAACTCAGTCAAGTTCATCCTAACTCGGTAGTACATGGCTACATTTGTAACTTAATTGAAACTGGGTGTTTTGTTCGCTTTCTTGGGCGTTTGACTGGTTTCTCCCCCAGGCATAAGGCAATGGATGACCCTAAAGCTGATCTTTCAGAAACCTATTTCATTGGACAATCTGTTCGCAGTAATATACTAAATGTCAGTAGCGAATCAGGTCGCATAACACTGTCGTTGAAGCAGTCATCTTGCTCTTCAACAGATGTGTCCTTTATTCAGGAGTACTTTATGTTGGAGGAGAAGATTGCTACGCTGCAACTGTTAGACTCAAAAGAATCCAAGTCAAATTGGTCAGAAGGATTTACAATTGGCAGTGTTGTTGAGGGAAAAGTACAGGAGGTAAAGGATGTTGGAGTTGTTGTCAGCTTTGAGAAATATAATGACGTCTTTGGTTTCATCACACACTACCAATTAGGTGGGACCGTTGTAGAAACAGGCTCCAGCGTTCATGCAGTTGTACTTGATGTTGCCAAGGTGGAGCACCTTGTTGATTTATCGATGAAACAAGAGTTCACTAATAAATTCAAAGAAAGTTCTGACAAGAAAAGTCATAAGAAGAAACGAAAAAGTGAAGCATTGGATGACCTGGAGGTACATCAGACAGTAAATGCAATTGTTGAGATTGTGAAGGAGAATTACCTGGTTCTGTCAATCCCCAAGTATAATTATGCTGTAGGATATGCATCAATCTCGGACTACAATACTCAAAAAGTTCCTCAGAAACAGTTTTTGAATGGTCAAAGTGTTGATGCCACTGTTATGGCTCTTCCAAGCCCTACAACAACAGGTAGGTTGCTTTTACTACTTAAATCTATAAGTGAGTCCGAGACATCCAGTTCAAAACGGGCAAAGAAGAAGTCCAGCTATAAAGTGGGATCTATGGTTGAGGCAGAGATTACGGAAATAAAGCCTCTTGAACTAAGATTGAAATTTGGAATTGGCTTTCATGGGCGGGTTCACATTACAGAGGTAAATGATGAGTTTCTGGAAGATCCATTTAATAACTTCAGAATTGGGCAAACAGTGGCTGCAAAGATCGTTGCCAAGACCAATTATTCAGATAACAACAAAACGAGCTACCAGTGGGATCTTTCCTTGAAATCTACAATGCTAACGGGTTCCTGTGAAATAGGGGAAAAGATTATAACTGAAGATCTTGATTTCTCAACTGGGCAATGTGTCTCTGGTTATGTTTATAAAGTGGATGGTGAATGGGTCTGGTTGACAATATCTCGAAGTGTTAGGGCTCAGCTTTTTGTTCTCGACAGTGCTTGTGAGCCTAGTGAACTTCAAGACTTTCAGAAACGCTTTCACCTGGGAAATGCTGTATCTGGTTATGTCTTAAGTGTTAACAGGGAGAAAAAGCTATTGCGCCTGGTTCTGCATCCTTTTTCTCCCATCTCTGATAAAACTGTTGATCATGGGGTTCCAAAGATGGATGATCCACACATTAACATTATGAATGAGAATGTAACTGCTCATATTCGCGAGGGACGTGCTATAGGTGGGAGAATAATTAAAAAACTTCCAGGTGTTAGTGGAATGACTGTGCAAATTGGACCCCATCTTTATGGCAGGGTCCATTATACTGAACTTTACGACTCATGGGAGTCTGACCCATTGTCTGGATATCATGAAGGGCAATTTGTCAAATGCAAGGTCCTTGAACTTGTCCGCTCTGTGAAGGGAACTTTTCACATTGATTTGTCTTTGCGCGCTTCTTTAGTAGGCGGGCTCAGTCCAGATTCTGTGGAACCCCAGGATGACACACATTCTCAATCCAAACATGTGGAAACGATCGAAGATCTTAATCCTAACATGATGGTTCAGGGTTATGTGAAAAATATAACACCAAAAGGATGTTTTATTTTGCTTTCGCGGAAGCTTGATGCAAAAATTCTCGTCTCCAATTTATCCGATGGATATGTTCAAGATCTCGAAAAGGAATTCCCAGTTGGAAAGCTTGTAACTGGCAGGGTTTCATCTGTGGAGCCATTATCGAAGCGAGTTGAAGTCACCTTGAAGTCATTGAACGCAAGCAGTGTGCCAAAGTTTGGAAGTGATAATTTGGATAGCTTGCATGTTGGAGATATTATCTCTGGCAGGGTAAAAAGGATGGAGTCATATGGTTTATTCATCACGATTGACAACACAAATGTGGTTGGACTATGCCATGTGTCGGAGCTTTCAGAAGATAAACTTGACAGTATTGAAACTAAATACAAAACAGGAGAGAGGGTGACAGCAAAAGTATTGAAGGTGGACAAAGGGAGGCACCGAGTTTCTCTTGGGATGAAGGATGTTTATATTATGGACAATGATGACCTTGAGATGCTCTCAGAACAAGATCCTGATGAAACCATTGTGGAGAATGTTCTTACGGATGTTACTATGTCAGAAATATGTCCCGAAAGCAATTCATTTTTTACCCAGGACATGGATGTCAATAGTAAAAATGCAGAATCCCAATTTCTTGCACAAGTAGAATCTAGAGCTTTTGTTCCTCCGCTTGAAGTCACTCTTGATGACATAGACAAATTCGACGGTGAAGATAAAGAGCATCTTGATGTAGGCACTGTCAATGAAAAGAAAATGCAGCCGACAAAGAAAAAAGCTAAGGAAGAGAGGGAGCGCGAGATAAGGTCTGCTGAGGAAAGACTATTGGCAAATGATATACCCATAACTGATGAGGAATATGAGAAACTAGTTAGAACTTCTCCAAATAGCAGTTTTGTCTGGATAAAATATATGGAATTTGTGCTCTCTACATCTAATGTTGAGAAGGCACGCTCAATTGCTGAAAGGGCTCTGGCAACAATAAAGTTGGACAAAGAGACTGAGAAGGAGAAACTCAATGTTTGGGTGGCTTATTTCAATTTGGAAAACAAATACGGAAGTCCTCCAGAGGAAGCTGTAAAGAAAGTCTTTCAAAGAGCAGTACAGTGTAATGATTCCAAAACAGTTCATTTAGCACTTTTAGGACTGTATGAAAGGACTGAGCAACACAGGTTGGCTGATGAGCTACTTGATAAAATGACAAGGAAGTTCAAGACTTCCTGCAAGGTTTGGCTAAGGCGGGTAAAGCTGCTCTTAATCCGAAAGCAGGATGGGATTCAGGATTTTCTCAGTCGTGCTGAGAAAGTCCTTCCTAAGCATAAGCTTATCAAATTCAATTCCCAGACAGCTATCCTTGAGTTTAAATGTGGAGAACCTGAGAGAGGACGATCCATGTTTGAGAATATTTTGCGGAATTACCCTAAGAGAACAGACTTGTGGAGCGTCTACCTTGATCAAGAAATTCGACTTGGAAATATCGATCTGATTCATGCACTATTTGAGAGGGCAACTAGTTTGAGCCTCCCAGCAAAAAAGATGAAGTTCTTATTTAAAAAGTATCTGGCGTATGAGAAATCGCAAGGCGATGAAGAAAAGATCGAGTATGTGAAACGGAAGGCAATGGAGTATGTGGAGAATACAGTAGCTTGA

Protein Analysis

1929

Amino Acids

215.6

Weight (kDa)

8.31

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3446, 3498
AasI GACNNNNNNGTC 1 cut(s) 4742
AatII GACGTC 3 cut(s) 114, 153, 2688
AccB1I GGYRCC 2 cut(s) 4, 4575
AccB7I CCANNNNNTGG 4 cut(s) 1080, 3926, 4355, 4738
AccBSI CCGCTC 3 cut(s) 199, 247, 3978
AccI GTMKAC 2 cut(s) 1251, 5583
AccII CGCG 4 cut(s) 3789, 4017, 4180, 4935
AcuI CTGAAG 7 cut(s) 141, 275, 441, 507, 1353, 3292, 3471
AcyI GRCGYC 3 cut(s) 111, 150, 2685
AfaI GTAC 7 cut(s) 1094, 2283, 2525, 2634, 2760, 2895, 5241
AfeI AGCGCT 1 cut(s) 1447
AflII CTTAAG 1 cut(s) 3643
AflIII ACRYGT 1 cut(s) 4087
AhdI GACNNNNNGTC 2 cut(s) 115, 3922
AhlI ACTAGT 2 cut(s) 5005, 5648
AjiI CACGTC 1 cut(s) 3797
AjuI GAANNNNNNNTTGG 6 cut(s) 65, 97, 4239, 4271, 5589, 5621
AleI CACNNNNGTG 1 cut(s) 4457
AloI GAACNNNNNNTCC 6 cut(s) 1629, 1661, 1711, 1743, 2406, 2438
Alw21I GWGCWC 2 cut(s) 2784, 5064
Alw26I GTCTC 8 cut(s) 39, 421, 542, 1212, 3122, 3487, 4210, 5129
AlwNI CAGNNNCTG 3 cut(s) 1865, 3329, 4049
Aor51HI AGCGCT 1 cut(s) 1447
AoxI GGCC 5 cut(s) 27, 213, 1264, 1440, 1964
ApeKI GCWGC 9 cut(s) 136, 565, 1742, 2120, 2239, 2554, 3329, 4897, 5386
AseI ATTAAT 1 cut(s) 2226
AspLEI GCGC 6 cut(s) 645, 1448, 3675, 4017, 4019, 4935
AspS9I GGNCC 9 cut(s) 97, 213, 436, 697, 1264, 2721, 3860, 3880, 3961
AsuC2I CCSGG 2 cut(s) 42, 1292
AvaII GGWCC 7 cut(s) 97, 436, 697, 2721, 3860, 3880, 3961
BanI GGYRCC 2 cut(s) 4, 4575
BanII GRGCYC 3 cut(s) 3550, 4038, 5110
BarI GAAGNNNNNNTAC 6 cut(s) 435, 467, 1076, 1108, 2921, 2953
BauI CACGAG 1 cut(s) 975
BbsI GAAGAC 3 cut(s) 150, 443, 732
Bbv12I GWGCWC 2 cut(s) 2784, 5064
BbvCI CCTCAGC 3 cut(s) 240, 1737, 4950
BbvI GCAGC 9 cut(s) 148, 577, 1729, 2107, 2251, 2541, 3316, 4909, 5373
BceAI ACGGC 2 cut(s) 110, 1502
BcgI CGANNNNNNTGC 6 cut(s) 206, 240, 2973, 3007, 3779, 3813
BclI TGATCA 3 cut(s) 2161, 3718, 5590
BcnI CCSGG 2 cut(s) 42, 1292
BcoDI GTCTC 8 cut(s) 39, 421, 542, 1212, 3122, 3487, 4210, 5129
BcuI ACTAGT 2 cut(s) 5005, 5648
BfaI CTAG 9 cut(s) 165, 546, 1146, 1370, 2177, 3582, 4791, 5006, 5649
BfmI CTRYAG 3 cut(s) 525, 2973, 3801
BfoI RGCGCY 1 cut(s) 1449
BfrI CTTAAG 1 cut(s) 3643
BglII AGATCT 5 cut(s) 627, 1838, 3454, 4105, 4234
BisI GCNGC 9 cut(s) 137, 566, 1743, 2121, 2240, 2555, 3330, 4898, 5387
BlpI GCTNAGC 1 cut(s) 3549
BlsI GCNGC 9 cut(s) 138, 567, 1744, 2122, 2241, 2556, 3331, 4899, 5388
BmcAI AGTACT 1 cut(s) 2525
Bme18I GGWCC 7 cut(s) 97, 436, 697, 2721, 3860, 3880, 3961
BmeRI GACNNNNNGTC 2 cut(s) 115, 3922
BmgBI CACGTC 1 cut(s) 3797
BmgT120I GGNCC 9 cut(s) 97, 213, 436, 697, 1264, 2721, 3860, 3880, 3961
BmrI ACTGGG 5 cut(s) 570, 2034, 2322, 3480, 4247
BmuI ACTGGG 5 cut(s) 570, 2034, 2322, 3480, 4247
BpiI GAAGAC 3 cut(s) 150, 443, 732
BplI GAGNNNNNCTC 2 cut(s) 4622, 4654
BpmI CTGGAG 4 cut(s) 2037, 2725, 2909, 5187
Bpu10I CCTNAGC 6 cut(s) 240, 1737, 4917, 4950, 5372, 5451
Bpu1102I GCTNAGC 1 cut(s) 3549
BpuEI CTTGAG 3 cut(s) 911, 4649, 5513
BpuMI CCSGG 2 cut(s) 42, 1292
Bsa29I ATCGAT 2 cut(s) 2798, 5616
BsaBI GATNNNNATC 2 cut(s) 2983, 4110
BsaHI GRCGYC 3 cut(s) 111, 150, 2685
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 2646, 2676, 4524, 4554
Bse3DI GCAATG 3 cut(s) 2376, 3482, 5763
Bse8I GATNNNNATC 2 cut(s) 2983, 4110
BseCI ATCGAT 2 cut(s) 2798, 5616
BseJI GATNNNNATC 2 cut(s) 2983, 4110
BseMI GCAATG 3 cut(s) 2376, 3482, 5763
BsePI GCGCGC 1 cut(s) 4015
BseRI GAGGAG 4 cut(s) 257, 1103, 1185, 2552
BseXI GCAGC 9 cut(s) 148, 577, 1729, 2107, 2251, 2541, 3316, 4909, 5373
BseYI CCCAGC 2 cut(s) 821, 5662
Bsh1236I CGCG 4 cut(s) 3789, 4017, 4180, 4935
Bsh1285I CGRYCG 1 cut(s) 4101
BshFI GGCC 5 cut(s) 29, 215, 1266, 1442, 1966
BshNI GGYRCC 2 cut(s) 4, 4575
BshVI ATCGAT 2 cut(s) 2798, 5616
BsiEI CGRYCG 1 cut(s) 4101
BsiHKAI GWGCWC 2 cut(s) 2784, 5064
BsiSI CCGG 3 cut(s) 42, 1292, 1304
BslFI GGGAC 6 cut(s) 137, 1444, 1471, 2734, 3807, 4692
BsmAI GTCTC 8 cut(s) 39, 421, 542, 1212, 3122, 3487, 4210, 5129
BsmBI CGTCTC 2 cut(s) 39, 4210
BsmFI GGGAC 6 cut(s) 137, 1444, 1471, 2734, 3807, 4692
BsnI GGCC 5 cut(s) 29, 215, 1266, 1442, 1966
Bsp1286I GDGCHC 5 cut(s) 2784, 3550, 4038, 5064, 5110
Bsp1720I GCTNAGC 1 cut(s) 3549
Bsp19I CCATGG 2 cut(s) 730, 1762
Bsp68I TCGCGA 1 cut(s) 3789
BspANI GGCC 5 cut(s) 29, 215, 1266, 1442, 1966
BspDI ATCGAT 2 cut(s) 2798, 5616
BspFNI CGCG 4 cut(s) 3789, 4017, 4180, 4935
BspHI TCATGA 1 cut(s) 3934
BspQI GCTCTTC 2 cut(s) 2500, 3072
BspT107I GGYRCC 2 cut(s) 4, 4575
BspTI CTTAAG 1 cut(s) 3643
BsrBI CCGCTC 3 cut(s) 199, 247, 3978
BsrDI GCAATG 3 cut(s) 2376, 3482, 5763
BssHII GCGCGC 1 cut(s) 4015
BssNI GRCGYC 3 cut(s) 111, 150, 2685
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 7 cut(s) 730, 801, 918, 1762, 1822, 1970, 2772
Bst2BI CACGAG 1 cut(s) 975
Bst6I CTCTTC 5 cut(s) 254, 1329, 2500, 3072, 4917
BstACI GRCGYC 3 cut(s) 111, 150, 2685
BstAFI CTTAAG 1 cut(s) 3643
BstC8I GCNNGC 9 cut(s) 27, 1422, 1444, 2118, 4017, 4034, 4339, 4379, 5089
BstDSI CCRYGG 4 cut(s) 730, 1518, 1762, 2110
BstENI CCTNNNNNAGG 1 cut(s) 5517
BstFNI CGCG 4 cut(s) 3789, 4017, 4180, 4935
BstH2I RGCGCY 1 cut(s) 1449
BstHHI GCGC 6 cut(s) 645, 1448, 3675, 4017, 4019, 4935
BstMAI GTCTC 8 cut(s) 39, 421, 542, 1212, 3122, 3487, 4210, 5129
BstMCI CGRYCG 1 cut(s) 4101
BstMWI GCNNNNNNNGC 5 cut(s) 488, 640, 1742, 5105, 5383
BstNSI RCATGY 2 cut(s) 4091, 4385
BstSFI CTRYAG 3 cut(s) 525, 2973, 3801
BstUI CGCG 4 cut(s) 3789, 4017, 4180, 4935
BstV1I GCAGC 9 cut(s) 148, 577, 1729, 2107, 2251, 2541, 3316, 4909, 5373
BstV2I GAAGAC 3 cut(s) 150, 443, 732
BstXI CCANNNNNNTGG 5 cut(s) 1450, 2717, 3061, 3872, 4090
Bsu15I ATCGAT 2 cut(s) 2798, 5616
BsuRI GGCC 5 cut(s) 29, 215, 1266, 1442, 1966
BsuTUI ATCGAT 2 cut(s) 2798, 5616
BtgI CCRYGG 4 cut(s) 730, 1518, 1762, 2110
BtgZI GCGATG 2 cut(s) 290, 5736
BtrI CACGTC 1 cut(s) 3797
BtsI GCAGTG 2 cut(s) 2620, 4348
BtuMI TCGCGA 1 cut(s) 3789
Cac8I GCNNGC 9 cut(s) 27, 1422, 1444, 2118, 4017, 4034, 4339, 4379, 5089
CaiI CAGNNNCTG 3 cut(s) 1865, 3329, 4049
CciI TCATGA 1 cut(s) 3934
CfoI GCGC 6 cut(s) 645, 1448, 3675, 4017, 4019, 4935
Cfr13I GGNCC 9 cut(s) 97, 213, 436, 697, 1264, 2721, 3860, 3880, 3961
ClaI ATCGAT 2 cut(s) 2798, 5616
CseI GACGC 3 cut(s) 56, 1171, 5569
CsiI ACCWGGT 1 cut(s) 2940
Csp6I GTAC 7 cut(s) 1093, 2282, 2524, 2633, 2759, 2894, 5240
CviQI GTAC 7 cut(s) 1093, 2282, 2524, 2633, 2759, 2894, 5240
DraI TTTAAA 2 cut(s) 5500, 5689
DrdI GACNNNNNNGTC 1 cut(s) 4742
DriI GACNNNNNGTC 2 cut(s) 115, 3922
DseDI GACNNNNNNGTC 1 cut(s) 4742
Eam1104I CTCTTC 5 cut(s) 254, 1329, 2500, 3072, 4917
Eam1105I GACNNNNNGTC 2 cut(s) 115, 3922
EarI CTCTTC 5 cut(s) 254, 1329, 2500, 3072, 4917
EciI GGCGGA 1 cut(s) 1954
Eco130I CCWWGG 7 cut(s) 730, 801, 918, 1762, 1822, 1970, 2772
Eco147I AGGCCT 1 cut(s) 1966
Eco24I GRGCYC 3 cut(s) 3550, 4038, 5110
Eco32I GATATC 1 cut(s) 3932
Eco47I GGWCC 7 cut(s) 97, 436, 697, 2721, 3860, 3880, 3961
Eco47III AGCGCT 1 cut(s) 1447
Eco57I CTGAAG 7 cut(s) 141, 275, 441, 507, 1353, 3292, 3471
EcoNI CCTNNNNNAGG 1 cut(s) 5517
EcoO109I RGGNCCY 2 cut(s) 436, 3961
EcoRI GAATTC 3 cut(s) 883, 1392, 4247
EcoRV GATATC 1 cut(s) 3932
EcoT14I CCWWGG 7 cut(s) 730, 801, 918, 1762, 1822, 1970, 2772
EcoT22I ATGCAT 1 cut(s) 2986
EcoT38I GRGCYC 3 cut(s) 3550, 4038, 5110
ErhI CCWWGG 7 cut(s) 730, 801, 918, 1762, 1822, 1970, 2772
Esp3I CGTCTC 2 cut(s) 39, 4210
FaqI GGGAC 6 cut(s) 137, 1444, 1471, 2734, 3807, 4692
FauI CCCGC 5 cut(s) 192, 240, 3246, 4025, 5370
FauNDI CATATG 5 cut(s) 709, 1223, 1584, 1732, 4426
FbaI TGATCA 3 cut(s) 2161, 3718, 5590
FblI GTMKAC 2 cut(s) 1251, 5583
Fnu4HI GCNGC 9 cut(s) 137, 566, 1743, 2121, 2240, 2555, 3330, 4898, 5387
FriOI GRGCYC 3 cut(s) 3550, 4038, 5110
Fsp4HI GCNGC 9 cut(s) 137, 566, 1743, 2121, 2240, 2555, 3330, 4898, 5387
FspBI CTAG 9 cut(s) 165, 546, 1146, 1370, 2177, 3582, 4791, 5006, 5649
GlaI GCGC 6 cut(s) 644, 1447, 3674, 4016, 4018, 4934
GluI GCNGC 9 cut(s) 137, 566, 1743, 2121, 2240, 2555, 3330, 4898, 5387
GsaI CCCAGC 2 cut(s) 825, 5666
GsuI CTGGAG 4 cut(s) 2037, 2725, 2909, 5187
HaeII RGCGCY 1 cut(s) 1449
HaeIII GGCC 5 cut(s) 29, 215, 1266, 1442, 1966
HapII CCGG 3 cut(s) 42, 1292, 1304
HgaI GACGC 3 cut(s) 56, 1171, 5569
HhaI GCGC 6 cut(s) 645, 1448, 3675, 4017, 4019, 4935
Hin1I GRCGYC 3 cut(s) 111, 150, 2685
Hin6I GCGC 6 cut(s) 643, 1446, 3673, 4015, 4017, 4933
HinP1I GCGC 6 cut(s) 643, 1446, 3673, 4015, 4017, 4933
HincII GTYRAC 3 cut(s) 1252, 3525, 3652
HindII GTYRAC 3 cut(s) 1252, 3525, 3652
HindIII AAGCTT 5 cut(s) 489, 1349, 4184, 4262, 5459
HpaI GTTAAC 1 cut(s) 3652
HpaII CCGG 3 cut(s) 42, 1292, 1304
Hpy166II GTNNAC 9 cut(s) 1252, 1522, 2814, 3259, 3525, 3587, 3652, 4564, 5584
Hpy8I GTNNAC 9 cut(s) 1252, 1522, 2814, 3259, 3525, 3587, 3652, 4564, 5584
Hpy99I CGWCG 5 cut(s) 110, 113, 131, 152, 4847
HpyCH4IV ACGT 5 cut(s) 111, 150, 1311, 2685, 3796
HpyF10VI GCNNNNNNNGC 5 cut(s) 488, 640, 1742, 5105, 5383
HpySE526I ACGT 5 cut(s) 111, 150, 1311, 2685, 3796
Hsp92I GRCGYC 3 cut(s) 111, 150, 2685
HspAI GCGC 6 cut(s) 643, 1446, 3673, 4015, 4017, 4933
Ksp22I TGATCA 3 cut(s) 2161, 3718, 5590
KspAI GTTAAC 1 cut(s) 3652
LguI GCTCTTC 2 cut(s) 2500, 3072
Lsp1109I GCAGC 9 cut(s) 148, 577, 1729, 2107, 2251, 2541, 3316, 4909, 5373
MabI ACCWGGT 1 cut(s) 2940
MaeI CTAG 9 cut(s) 165, 546, 1146, 1370, 2177, 3582, 4791, 5006, 5649
MaeII ACGT 5 cut(s) 111, 150, 1311, 2685, 3796
MbiI CCGCTC 3 cut(s) 199, 247, 3978
MfeI CAATTG 5 cut(s) 939, 2165, 2607, 2913, 5094
MhlI GDGCHC 5 cut(s) 2784, 3550, 4038, 5064, 5110
MlyI GAGTC 8 cut(s) 686, 1226, 1827, 2561, 3131, 3896, 3920, 4430
MmeI TCCRAC 7 cut(s) 2514, 2632, 4237, 4366, 4444, 4461, 5106
Mph1103I ATGCAT 1 cut(s) 2986
MslI CAYNNNNRTG 6 cut(s) 1476, 1517, 3059, 3870, 4457, 4866
MspA1I CMGCKG 1 cut(s) 568
MspCI CTTAAG 1 cut(s) 3643
MspI CCGG 3 cut(s) 42, 1292, 1304
MunI CAATTG 5 cut(s) 939, 2165, 2607, 2913, 5094
MvnI CGCG 4 cut(s) 3789, 4017, 4180, 4935
MwoI GCNNNNNNNGC 5 cut(s) 488, 640, 1742, 5105, 5383
NciI CCSGG 2 cut(s) 42, 1292
NcoI CCATGG 2 cut(s) 730, 1762
NdeI CATATG 5 cut(s) 709, 1223, 1584, 1732, 4426
NmuCI GTSAC 5 cut(s) 329, 913, 4315, 4540, 4816
NruI TCGCGA 1 cut(s) 3789
NsiI ATGCAT 1 cut(s) 2986
NspI RCATGY 2 cut(s) 4091, 4385
OliI CACNNNNGTG 1 cut(s) 4457
PagI TCATGA 1 cut(s) 3934
PauI GCGCGC 1 cut(s) 4015
PceI AGGCCT 1 cut(s) 1966
PciI ACATGT 1 cut(s) 4087
PciSI GCTCTTC 2 cut(s) 2500, 3072
PcsI WCGNNNNNNNCGW 3 cut(s) 147, 153, 3793
PflFI GACNNNGTC 2 cut(s) 110, 149
PflMI CCANNNNNTGG 4 cut(s) 1080, 3926, 4355, 4738
PkrI GCNGC 9 cut(s) 138, 567, 1744, 2122, 2241, 2556, 3331, 4899, 5388
Ple19I CGATCG 1 cut(s) 4101
PleI GAGTC 8 cut(s) 685, 1226, 1826, 2561, 3130, 3896, 3919, 4429
PpsI GAGTC 8 cut(s) 685, 1226, 1826, 2561, 3130, 3896, 3919, 4429
PpuMI RGGWCCY 2 cut(s) 436, 3961
PscI ACATGT 1 cut(s) 4087
PshBI ATTAAT 1 cut(s) 2226
PsiI TTATAA 2 cut(s) 3446, 3498
Psp5II RGGWCCY 2 cut(s) 436, 3961
PspFI CCCAGC 2 cut(s) 821, 5662
PspPI GGNCC 9 cut(s) 97, 213, 436, 697, 1264, 2721, 3860, 3880, 3961
PspPPI RGGWCCY 2 cut(s) 436, 3961
PsrI GAACNNNNNNTAC 2 cut(s) 2071, 2103
PstNI CAGNNNCTG 3 cut(s) 1865, 3329, 4049
PsyI GACNNNGTC 2 cut(s) 110, 149
PteI GCGCGC 1 cut(s) 4015
PvuI CGATCG 1 cut(s) 4101
PvuII CAGCTG 1 cut(s) 568
RruI TCGCGA 1 cut(s) 3789
RsaI GTAC 7 cut(s) 1094, 2283, 2525, 2634, 2760, 2895, 5241
RsaNI GTAC 7 cut(s) 1093, 2282, 2524, 2633, 2759, 2894, 5240
RseI CAYNNNNRTG 6 cut(s) 1476, 1517, 3059, 3870, 4457, 4866
SalI GTCGAC 1 cut(s) 1250
SapI GCTCTTC 2 cut(s) 2500, 3072
SatI GCNGC 9 cut(s) 137, 566, 1743, 2121, 2240, 2555, 3330, 4898, 5387
Sau96I GGNCC 9 cut(s) 97, 213, 436, 697, 1264, 2721, 3860, 3880, 3961
ScaI AGTACT 1 cut(s) 2525
SchI GAGTC 8 cut(s) 686, 1226, 1827, 2561, 3131, 3896, 3920, 4430
SduI GDGCHC 5 cut(s) 2784, 3550, 4038, 5064, 5110
SexAI ACCWGGT 1 cut(s) 2940
SfcI CTRYAG 3 cut(s) 525, 2973, 3801
SinI GGWCC 7 cut(s) 97, 436, 697, 2721, 3860, 3880, 3961
SmiMI CAYNNNNRTG 6 cut(s) 1476, 1517, 3059, 3870, 4457, 4866
SmlI CTYRAG 4 cut(s) 926, 3643, 4628, 5492
SmoI CTYRAG 4 cut(s) 926, 3643, 4628, 5492
SpeI ACTAGT 2 cut(s) 5005, 5648
SseBI AGGCCT 1 cut(s) 1966
SspI AATATT 4 cut(s) 385, 1125, 2216, 5542
SspMI CTAG 9 cut(s) 165, 546, 1146, 1370, 2177, 3582, 4791, 5006, 5649
StuI AGGCCT 1 cut(s) 1966
StyI CCWWGG 7 cut(s) 730, 801, 918, 1762, 1822, 1970, 2772
TaiI ACGT 5 cut(s) 114, 153, 1314, 2688, 3799
TatI WGTACW 6 cut(s) 1092, 2281, 2523, 2632, 2758, 5239
TseFI GTSAC 5 cut(s) 329, 913, 4315, 4540, 4816
TseI GCWGC 9 cut(s) 136, 565, 1742, 2120, 2239, 2554, 3329, 4897, 5386
Tsp45I GTSAC 5 cut(s) 329, 913, 4315, 4540, 4816
TspGWI ACGGA 5 cut(s) 1637, 3215, 4697, 5208, 5764
Tth111I GACNNNGTC 2 cut(s) 110, 149
Van91I CCANNNNNTGG 4 cut(s) 1080, 3926, 4355, 4738
Vha464I CTTAAG 1 cut(s) 3643
VpaK11BI GGWCC 7 cut(s) 97, 436, 697, 2721, 3860, 3880, 3961
VspI ATTAAT 1 cut(s) 2226
XagI CCTNNNNNAGG 1 cut(s) 5517
XbaI TCTAGA 1 cut(s) 4790
XceI RCATGY 2 cut(s) 4091, 4385
XcmI CCANNNNNNNNNTGG 2 cut(s) 1811, 3169
XmiI GTMKAC 2 cut(s) 1251, 5583
XspI CTAG 9 cut(s) 165, 546, 1146, 1370, 2177, 3582, 4791, 5006, 5649
ZraI GACGTC 3 cut(s) 112, 151, 2686
ZrmI AGTACT 1 cut(s) 2525
Zsp2I ATGCAT 1 cut(s) 2986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.