Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Reverse (-)

13917417 .. 13923060

Gene Structure 5644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0166900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGGGTCTACTTGTGAATCTTCTTCACCTTCCTGCATTTTCACCCATTGCTTATAAACCTCACAGTGTTGAATATCCCAAAGCAAATGTAACAATTAAATGTAAGGCCTATGGAGGAGAATTGGATGCTTTGCCTCACTTACAAACTCTTGGAAAATTTCCAAGGGAGGAGCTTGTTGAAAAAGTTGTCCTGGTCAGATTTGACCCTACCCTTTTGCTTCAGGAACAAGTACAAGAACAAAGATTTCAATGCAATGCTGTTTTGACCATTAAGTATTTACACCAGTCCGGGGCTAAAGTAGTTCTTGTTAGTGACTGGAGTGCTAAAACTAATCCTAAAGTGTTTGCTGCACAGTCTGTTGCAGGTTTCTTGTCATCAATTCTTGACTACAAAGTTGTTCCGGTACAATGCATTTCTCATAACACGGTATCAAAGACAGAAGGCTTTGAAAAAGCAGATATTCTTCTCCTTGAGAATCTTTCTGATTTTAGAGGGGAAGTTGCCAATTGTTCAAAATTTGCTCAAGTTTTGTCATCGGGAGTTGATATCTTTGTTAATGACTACTTTTCCCGGTCTCATAAGATTCTTGCATCGACCTGTGGAGTTGCTCGTTTCTGTTATGCTTGTTTAGCTGGTTTTCACTTTGAGGAGTGTCTATATCGCCTCAGAAGGCTTGCAGAAACCAGTACAAAACCTTATGTAGCAATTGTTGGAGGCGGTAATATTTCTAATAAAGCTGCTGCTGTGCATACCTTAGCTTCTCTATGCGATGGGTTAGTGTTTGTTGGAATGATGTCATTCCAAATAATGCATGCATTAGGGCTATCTGTTCCCATGGATTTGGTGGAACATGGAGCACTTAAAGAAGCTTTGGATATAGTCCAGTTTGCACACAATAGAAATGTACAGATCCTATATCCAAAAGACTTTTGGTGCAAGAACGATCGTCATCCGAAGCAATTGGAATTATATCCTGCACGTGCTATTCCGGATGGGTGGGTACCTGTTGATATTGGGCCTGTATCGTTAGATGGAATAAACTCCATTCTCACTAAATGCAAGAAAGTTACCTGGATTGGTCCAGTGAAATTTCATAAGAACAGCGGCAAAAAAGGAGCTTCTAAAGTGGCGCAATTGCTTAATCAACTAAGTCAAGGCAACAGCAACATAACTGTCATTGGCAATATGGCATGTCAAGCAATGGTGAAGGAATCAAATTCCATCTTTCACTTCAATATGTTAGAGAATGCTTCAGTTGTATGGGAGTTTCTCAAAGGAAGAAAACTTCCAGGCATCATGGCTTTAGATAGAGCATTCCCTTTTGATATTGACTGGAAGGCAGCCTTTTCAGATCCTGCTCAACCTTTGGTAGTTGATATTGGAAGTGGTAATGGAATGTTTCTTTTCGGGATGGCTAATACAAGGAAGGATTTGAATTTTCTTGGTTTGGAGATTAATAAAAAGCTGGTAAAACGTTGCCTGGATTCCAGTCATCAGTGTGGTATAAGAAATGGGTACTTCATCGCAACAAATGCAACATCAACATTCCGCTCCATAGTTTCTAGTTACCCCGGAAAGCTAGTACTTGTGTCAATACAGTGTCCAAATCCTGATTTCAACGAACCAGAACATCGATGGAGAATGCTGCAAAGGTCATTAGTCGAAGCAGTTGCTGATCTCCTTACAGTTGATGGAAAGGTGTTTCTGCAATCTGATATAGAGGTTGTCTCTGTGAGAATGAAGGAACAGTTTCTGAGATATGGCAAGGGCAAACTTACTATTGTGCATGAGCAAAGTTATGCCATAAATAATGAAGGGTGGCTCAAGGACAATCCATTCGGAGTTCGGTCAGATTGGGAACAACATGTCTTAGATCGTGGGGCCCCTATGTACAGATTAATGCTTTGCAAATCAGCCTCTAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

642

Amino Acids

71.43

Weight (kDa)

8.76

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGK	PF00162	58 - 406	6.7e-58	Phosphoglycerate kinase
Methyltransf_4	PF02390	454 - 604	3.6e-24	Putative methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	353
Acc65I	GGTACC	1 cut(s)	1000
AccB1I	GGYRCC	1 cut(s)	1000
AccBSI	CCGCTC	1 cut(s)	1551
AccI	GTMKAC	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	988
AciI	CCGC	3 cut(s)	717, 1104, 1549
AclI	AACGTT	1 cut(s)	1474
AclWI	GGATC	2 cut(s)	904, 1346
AcsI	RAATTY	5 cut(s)	155, 515, 1088, 1216, 1435
AcuI	CTGAAG	2 cut(s)	203, 1236
AcvI	CACGTG	1 cut(s)	980
AfaI	GTAC	8 cut(s)	231, 405, 688, 906, 1002, 1517, 1584, 1892
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	1864
AgsI	TTSAA	8 cut(s)	71, 179, 248, 449, 513, 1234, 1435, 1618
AjnI	CCWGG	4 cut(s)	189, 1070, 1288, 1479
AluBI	AGCT	8 cut(s)	172, 632, 737, 758, 869, 1118, 1465, 1579
AluI	AGCT	8 cut(s)	172, 632, 737, 758, 869, 1118, 1465, 1579
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	2 cut(s)	579, 1732
AlwI	GGATC	2 cut(s)	904, 1346
AlwNI	CAGNNNCTG	3 cut(s)	1355, 1673, 1753
Aor13HI	TCCGGA	1 cut(s)	988
AoxI	GGCC	3 cut(s)	105, 1016, 1881
ApaI	GGGCCC	1 cut(s)	1885
ApeKI	GCWGC	5 cut(s)	347, 737, 740, 1340, 1645
ApoI	RAATTY	5 cut(s)	155, 515, 1088, 1216, 1435
ArsI	GACNNNNNNTTYG	2 cut(s)	1820, 1852
AseI	ATTAAT	2 cut(s)	1455, 1898
Asp700I	GAANNNNTTC	1 cut(s)	1749
Asp718I	GGTACC	1 cut(s)	1000
AspLEI	GCGC	1 cut(s)	1132
AspS9I	GGNCC	4 cut(s)	1016, 1079, 1881, 1882
AsuC2I	CCSGG	3 cut(s)	289, 571, 1572
AsuHPI	GGTGA	3 cut(s)	17, 33, 1216
AvaII	GGWCC	1 cut(s)	1079
BaeGI	GKGCMC	1 cut(s)	1885
BanI	GGYRCC	1 cut(s)	1000
BanII	GRGCYC	1 cut(s)	1885
BbrPI	CACGTG	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	859
BbvI	GCAGC	5 cut(s)	334, 724, 727, 1352, 1632
BccI	CCATC	7 cut(s)	764, 986, 1025, 1229, 1405, 1629, 1685
BcgI	CGANNNNNNTGC	2 cut(s)	1652, 1686
BciT130I	CCWGG	4 cut(s)	191, 1072, 1290, 1481
BcnI	CCSGG	3 cut(s)	289, 571, 1572
BcoDI	GTCTC	2 cut(s)	579, 1732
BfaI	CTAG	3 cut(s)	1563, 1580, 1920
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	6 cut(s)	348, 738, 741, 1105, 1341, 1646
BlsI	GCNGC	6 cut(s)	349, 739, 742, 1106, 1342, 1647
BmcAI	AGTACT	1 cut(s)	1584
Bme1390I	CCNGG	7 cut(s)	191, 289, 571, 1072, 1290, 1481, 1572
Bme18I	GGWCC	1 cut(s)	1079
BmgT120I	GGNCC	4 cut(s)	1016, 1079, 1881, 1882
BmiI	GGNNCC	4 cut(s)	1002, 1882, 1883, 1884
BmrFI	CCNGG	7 cut(s)	191, 289, 571, 1072, 1290, 1481, 1572
BmsI	GCATC	3 cut(s)	115, 599, 1302
BplI	GAGNNNNNCTC	2 cut(s)	1712, 1744
BpmI	CTGGAG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	754
BpuEI	CTTGAG	3 cut(s)	491, 507, 1808
BpuMI	CCSGG	3 cut(s)	289, 571, 1572
Bsa29I	ATCGAT	1 cut(s)	1633
BsaAI	YACGTR	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	948
BsaI	GGTCTC	1 cut(s)	579
BsaJI	CCNNGG	4 cut(s)	161, 288, 834, 1570
BsaWI	WCCGGW	2 cut(s)	400, 988
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	7 cut(s)	283, 320, 684, 883, 1082, 1337, 1488
Bse3DI	GCAATG	3 cut(s)	45, 259, 1206
Bse8I	GATNNNNATC	1 cut(s)	948
BseAI	TCCGGA	1 cut(s)	988
BseBI	CCWGG	4 cut(s)	191, 1072, 1290, 1481
BseCI	ATCGAT	1 cut(s)	1633
BseDI	CCNNGG	4 cut(s)	161, 288, 834, 1570
BseGI	GGATG	4 cut(s)	130, 949, 997, 1416
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	3 cut(s)	45, 259, 1206
BseMII	CTCAG	2 cut(s)	679, 1745
BseNI	ACTGG	7 cut(s)	283, 320, 684, 883, 1082, 1337, 1488
BseRI	GAGGAG	3 cut(s)	129, 182, 662
BseSI	GKGCMC	1 cut(s)	1885
BseXI	GCAGC	5 cut(s)	334, 724, 727, 1352, 1632
BsgI	GTGCAG	2 cut(s)	333, 960
Bsh1285I	CGRYCG	1 cut(s)	946
BshFI	GGCC	3 cut(s)	107, 1018, 1883
BshNI	GGYRCC	1 cut(s)	1000
BshVI	ATCGAT	1 cut(s)	1633
BsiEI	CGRYCG	1 cut(s)	946
BsiHKAI	GWGCWC	1 cut(s)	859
BsiSI	CCGG	5 cut(s)	288, 401, 571, 989, 1572
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	579, 1732
BsmI	GAATGC	3 cut(s)	1252, 1313, 1647
BsnI	GGCC	3 cut(s)	107, 1018, 1883
Bso31I	GGTCTC	1 cut(s)	579
Bsp120I	GGGCCC	1 cut(s)	1881
Bsp1286I	GDGCHC	2 cut(s)	859, 1885
Bsp13I	TCCGGA	1 cut(s)	988
Bsp1407I	TGTACA	2 cut(s)	904, 1890
Bsp143I	GATC	5 cut(s)	909, 943, 1351, 1675, 1873
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	3 cut(s)	717, 1104, 1549
BspANI	GGCC	3 cut(s)	107, 1018, 1883
BspCNI	CTCAG	2 cut(s)	678, 1746
BspDI	ATCGAT	1 cut(s)	1633
BspEI	TCCGGA	1 cut(s)	988
BspLI	GGNNCC	4 cut(s)	1002, 1882, 1883, 1884
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	904, 1346
BspT107I	GGYRCC	1 cut(s)	1000
BspTNI	GGTCTC	1 cut(s)	579
BsrBI	CCGCTC	1 cut(s)	1551
BsrDI	GCAATG	3 cut(s)	45, 259, 1206
BsrGI	TGTACA	2 cut(s)	904, 1890
BsrI	ACTGG	7 cut(s)	283, 320, 684, 883, 1082, 1337, 1488
BssECI	CCNNGG	4 cut(s)	161, 288, 834, 1570
BssMI	GATC	5 cut(s)	909, 943, 1351, 1675, 1873
BssT1I	CCWWGG	2 cut(s)	161, 834
Bst2UI	CCWGG	4 cut(s)	191, 1072, 1290, 1481
Bst4CI	ACNGT	7 cut(s)	65, 354, 427, 1174, 1599, 1687, 1749
BstAPI	GCANNNNNTGC	1 cut(s)	1532
BstAUI	TGTACA	2 cut(s)	904, 1890
BstBAI	YACGTR	1 cut(s)	980
BstC8I	GCNNGC	2 cut(s)	675, 813
BstDEI	CTNAG	5 cut(s)	665, 754, 1148, 1754, 1870
BstDSI	CCRYGG	1 cut(s)	834
BstF5I	GGATG	4 cut(s)	130, 949, 997, 1416
BstHHI	GCGC	1 cut(s)	1132
BstKTI	GATC	5 cut(s)	912, 946, 1354, 1678, 1876
BstMAI	GTCTC	2 cut(s)	579, 1732
BstMBI	GATC	5 cut(s)	909, 943, 1351, 1675, 1873
BstMCI	CGRYCG	1 cut(s)	946
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 1196, 1532
BstNI	CCWGG	4 cut(s)	191, 1072, 1290, 1481
BstNSI	RCATGY	3 cut(s)	815, 1194, 1868
BstSCI	CCNGG	7 cut(s)	189, 287, 569, 1070, 1288, 1479, 1570
BstSLI	GKGCMC	1 cut(s)	1885
BstV1I	GCAGC	5 cut(s)	334, 724, 727, 1352, 1632
BstX2I	RGATCY	2 cut(s)	909, 1351
BstXI	CCANNNNNNTGG	1 cut(s)	841
BstYI	RGATCY	2 cut(s)	909, 1351
Bsu15I	ATCGAT	1 cut(s)	1633
BsuRI	GGCC	3 cut(s)	107, 1018, 1883
BsuTUI	ATCGAT	1 cut(s)	1633
BtgI	CCRYGG	1 cut(s)	834
BtgZI	GCGATG	2 cut(s)	783, 1507
BtsCI	GGATG	4 cut(s)	130, 949, 997, 1416
BtsIMutI	CAGTG	4 cut(s)	70, 1089, 1502, 1604
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	675, 813
CaiI	CAGNNNCTG	3 cut(s)	1355, 1673, 1753
CfoI	GCGC	1 cut(s)	1132
Cfr13I	GGNCC	4 cut(s)	1016, 1079, 1881, 1882
ClaI	ATCGAT	1 cut(s)	1633
Csp6I	GTAC	8 cut(s)	230, 404, 687, 905, 1001, 1516, 1583, 1891
CviAII	CATG	7 cut(s)	812, 835, 851, 1191, 1297, 1787, 1865
CviQI	GTAC	8 cut(s)	230, 404, 687, 905, 1001, 1516, 1583, 1891
DdeI	CTNAG	5 cut(s)	665, 754, 1148, 1754, 1870
DpnI	GATC	5 cut(s)	911, 945, 1353, 1677, 1875
DpnII	GATC	5 cut(s)	909, 943, 1351, 1675, 1873
Eco130I	CCWWGG	2 cut(s)	161, 834
Eco147I	AGGCCT	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	1885
Eco31I	GGTCTC	1 cut(s)	579
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	1079
Eco57I	CTGAAG	2 cut(s)	203, 1236
Eco72I	CACGTG	1 cut(s)	980
EcoO109I	RGGNCCY	2 cut(s)	1881, 1882
EcoRII	CCWGG	4 cut(s)	189, 1070, 1288, 1479
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	161, 834
EcoT22I	ATGCAT	3 cut(s)	413, 813, 817
EcoT38I	GRGCYC	1 cut(s)	1885
ErhI	CCWWGG	2 cut(s)	161, 834
FaeI	CATG	7 cut(s)	815, 838, 854, 1194, 1300, 1790, 1868
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 1328, 1360
FatI	CATG	7 cut(s)	811, 834, 850, 1190, 1296, 1786, 1864
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	6 cut(s)	348, 738, 741, 1105, 1341, 1646
FokI	GGATG	4 cut(s)	137, 936, 1004, 1423
FriOI	GRGCYC	1 cut(s)	1885
Fsp4HI	GCNGC	6 cut(s)	348, 738, 741, 1105, 1341, 1646
FspBI	CTAG	3 cut(s)	1563, 1580, 1920
GlaI	GCGC	1 cut(s)	1131
GluI	GCNGC	6 cut(s)	348, 738, 741, 1105, 1341, 1646
GsuI	CTGGAG	1 cut(s)	337
HaeIII	GGCC	3 cut(s)	107, 1018, 1883
HapII	CCGG	5 cut(s)	288, 401, 571, 989, 1572
HhaI	GCGC	1 cut(s)	1132
Hin1II	CATG	7 cut(s)	815, 838, 854, 1194, 1300, 1790, 1868
Hin6I	GCGC	1 cut(s)	1130
HinP1I	GCGC	1 cut(s)	1130
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	5 cut(s)	16, 475, 583, 1211, 1484
HpaII	CCGG	5 cut(s)	288, 401, 571, 989, 1572
HphI	GGTGA	3 cut(s)	17, 33, 1216
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	9 cut(s)	197, 484, 668, 954, 1351, 1714, 1755, 1841, 1852
Hpy188III	TCNNGA	6 cut(s)	221, 383, 537, 989, 1408, 1610
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	8 cut(s)	38, 434, 663, 1201, 1330, 1420, 1735, 1808
HpyCH4III	ACNGT	7 cut(s)	65, 354, 427, 1174, 1599, 1687, 1749
HpyCH4IV	ACGT	2 cut(s)	979, 1474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 1196, 1532
HpyF3I	CTNAG	5 cut(s)	665, 754, 1148, 1754, 1870
HpySE526I	ACGT	2 cut(s)	979, 1474
Hsp92II	CATG	7 cut(s)	815, 838, 854, 1194, 1300, 1790, 1868
HspAI	GCGC	1 cut(s)	1130
Kpn2I	TCCGGA	1 cut(s)	988
KpnI	GGTACC	1 cut(s)	1004
Kzo9I	GATC	5 cut(s)	909, 943, 1351, 1675, 1873
LmnI	GCTCC	4 cut(s)	169, 854, 1115, 1556
Lsp1109I	GCAGC	5 cut(s)	334, 724, 727, 1352, 1632
LweI	GCATC	3 cut(s)	115, 599, 1302
MaeI	CTAG	3 cut(s)	1563, 1580, 1920
MaeII	ACGT	2 cut(s)	979, 1474
MaeIII	GTNAC	4 cut(s)	88, 311, 1066, 1565
MalI	GATC	5 cut(s)	911, 945, 1353, 1677, 1875
MbiI	CCGCTC	1 cut(s)	1551
MboI	GATC	5 cut(s)	909, 943, 1351, 1675, 1873
MboII	GAAGA	4 cut(s)	11, 14, 455, 1290
MfeI	CAATTG	4 cut(s)	505, 705, 959, 1133
MflI	RGATCY	2 cut(s)	909, 1351
MhlI	GDGCHC	2 cut(s)	859, 1885
MmeI	TCCRAC	2 cut(s)	691, 766
Mph1103I	ATGCAT	3 cut(s)	413, 813, 817
MroI	TCCGGA	1 cut(s)	988
MroXI	GAANNNNTTC	1 cut(s)	1749
MseI	TTAA	7 cut(s)	96, 270, 555, 861, 1140, 1455, 1898
MslI	CAYNNNNRTG	1 cut(s)	1497
MspA1I	CMGCKG	1 cut(s)	1104
MspI	CCGG	5 cut(s)	288, 401, 571, 989, 1572
MspR9I	CCNGG	7 cut(s)	191, 289, 571, 1072, 1290, 1481, 1572
MunI	CAATTG	4 cut(s)	505, 705, 959, 1133
Mva1269I	GAATGC	3 cut(s)	1252, 1313, 1647
MvaI	CCWGG	4 cut(s)	191, 1072, 1290, 1481
MwoI	GCNNNNNNNGC	3 cut(s)	629, 1196, 1532
NciI	CCSGG	3 cut(s)	289, 571, 1572
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	5 cut(s)	909, 943, 1351, 1675, 1873
NlaIII	CATG	7 cut(s)	815, 838, 854, 1194, 1300, 1790, 1868
NlaIV	GGNNCC	4 cut(s)	1002, 1882, 1883, 1884
NmuCI	GTSAC	1 cut(s)	311
NsiI	ATGCAT	3 cut(s)	413, 813, 817
NspI	RCATGY	3 cut(s)	815, 1194, 1868
PaeI	GCATGC	1 cut(s)	815
PceI	AGGCCT	1 cut(s)	107
PciI	ACATGT	1 cut(s)	1864
PctI	GAATGC	3 cut(s)	1252, 1313, 1647
PdmI	GAANNNNTTC	1 cut(s)	1749
PfeI	GAWTC	5 cut(s)	16, 475, 583, 1211, 1484
PkrI	GCNGC	6 cut(s)	349, 739, 742, 1106, 1342, 1647
Ple19I	CGATCG	1 cut(s)	946
PmaCI	CACGTG	1 cut(s)	980
PmlI	CACGTG	1 cut(s)	980
Ppu21I	YACGTR	1 cut(s)	980
PscI	ACATGT	1 cut(s)	1864
PshBI	ATTAAT	2 cut(s)	1455, 1898
PsiI	TTATAA	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	1474
Psp6I	CCWGG	4 cut(s)	189, 1070, 1288, 1479
PspCI	CACGTG	1 cut(s)	980
PspGI	CCWGG	4 cut(s)	189, 1070, 1288, 1479
PspN4I	GGNNCC	4 cut(s)	1002, 1882, 1883, 1884
PspOMI	GGGCCC	1 cut(s)	1881
PspPI	GGNCC	4 cut(s)	1016, 1079, 1881, 1882
PstNI	CAGNNNCTG	3 cut(s)	1355, 1673, 1753
PsuI	RGATCY	2 cut(s)	909, 1351
PvuI	CGATCG	1 cut(s)	946
RsaI	GTAC	8 cut(s)	231, 405, 688, 906, 1002, 1517, 1584, 1892
RsaNI	GTAC	8 cut(s)	230, 404, 687, 905, 1001, 1516, 1583, 1891
RseI	CAYNNNNRTG	1 cut(s)	1497
SaqAI	TTAA	7 cut(s)	96, 270, 555, 861, 1140, 1455, 1898
SatI	GCNGC	6 cut(s)	348, 738, 741, 1105, 1341, 1646
Sau3AI	GATC	5 cut(s)	909, 943, 1351, 1675, 1873
Sau96I	GGNCC	4 cut(s)	1016, 1079, 1881, 1882
ScaI	AGTACT	1 cut(s)	1584
ScrFI	CCNGG	7 cut(s)	191, 289, 571, 1072, 1290, 1481, 1572
SduI	GDGCHC	2 cut(s)	859, 1885
SfaNI	GCATC	3 cut(s)	115, 599, 1302
SinI	GGWCC	1 cut(s)	1079
SmiMI	CAYNNNNRTG	1 cut(s)	1497
SmlI	CTYRAG	3 cut(s)	470, 522, 1823
SmoI	CTYRAG	3 cut(s)	470, 522, 1823
SphI	GCATGC	1 cut(s)	815
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	3 cut(s)	717, 1104, 1549
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	3 cut(s)	1563, 1580, 1920
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	7 cut(s)	189, 287, 569, 1070, 1288, 1479, 1570
StyI	CCWWGG	2 cut(s)	161, 834
TaaI	ACNGT	7 cut(s)	65, 354, 427, 1174, 1599, 1687, 1749
TaiI	ACGT	2 cut(s)	982, 1477
TaqI	TCGA	3 cut(s)	593, 1633, 1662
TaqII	GACCGA	1 cut(s)	1836
TatI	WGTACW	5 cut(s)	229, 686, 904, 1582, 1890
TauI	GCSGC	1 cut(s)	1107
TfiI	GAWTC	5 cut(s)	16, 475, 583, 1211, 1484
Tru1I	TTAA	7 cut(s)	96, 270, 555, 861, 1140, 1455, 1898
Tru9I	TTAA	7 cut(s)	96, 270, 555, 861, 1140, 1455, 1898
TscAI	CASTG	4 cut(s)	70, 1089, 1502, 1604
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	5 cut(s)	347, 737, 740, 1340, 1645
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	4 cut(s)	1082, 1510, 1754, 1827
TspRI	CASTG	4 cut(s)	70, 1089, 1502, 1604
VpaK11BI	GGWCC	1 cut(s)	1079
VspI	ATTAAT	2 cut(s)	1455, 1898
XapI	RAATTY	5 cut(s)	155, 515, 1088, 1216, 1435
XceI	RCATGY	3 cut(s)	815, 1194, 1868
XcmI	CCANNNNNNNNNTGG	3 cut(s)	841, 927, 1632
XmiI	GTMKAC	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	1749
XspI	CTAG	3 cut(s)	1563, 1580, 1920
ZrmI	AGTACT	1 cut(s)	1584
Zsp2I	ATGCAT	3 cut(s)	413, 813, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.