Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

471701 .. 475489

Gene Structure 3789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1005800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGGGGAAGGAGTTACAGTCCATCACCACCACCGAGGGGAGGATATGGTAGGAGGGGACAACGAAGTCCTAGCCCCAGGGGTCGCTATAGCGGTGGTCGAGGTAGCAGCAGAGATCTTCCTACAAGCCTTCTAGTTCGCAACCTTCGCCATGATTGCAGGCCAGAAGATCTCCGCAGGCCATTTGGGCAGTTTGGTGTGCTTAAGGACATCTACCTGCCAAAGGATTACTATACTGGGGAGCCTCGTGGTTTTGGTTTTGTCCAGTTTGTTGAACCTTCCGATGCTGAAGAGGCTAAATATCAAATGGATGGTCAGCTTCTTCTTGGTCGGGAGATAACTGTTGTGTTTGCAGAGGAGAACAGGAAGAAGCCATCTGATATGAGGCATAGGGAGCGTCCAAGCTCCCGGACTACTAGTCGATATCGTGATCGAAGACGGTCTCCTCCTCGCTATTCACTCTCTCCACCTCCACGCCGTGCAAGATCTCGGTCTCACAGCCATGATTATTATTCTCCTCCAAAACGAAGGGATTATTCCAGATCTGTCTCACCCCAAGAGAGAAGGTACAGCAGAGAGAAGTCGTTTTCTCGATCTCCTCCACCATATGAGGGGTCAAGGAGCCGTAGTCAGAGCCCAGTTAGGGGTCCAAGCCGGAGCAGAAGCAGAAGCCATAGTCCAAGGCGGAGCATAAGAAGAAGCCGAAGCCCTATCAATGAAGATTACCCAAGGGAACCAAATGGAGACAGATCTCCTAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

255

Amino Acids

29.58

Weight (kDa)

11.32

Isoelectric Point (pI)

118.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	44 - 114	4.1e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	225
AciI	CCGC	3 cut(s)	93, 175, 685
AcuI	CTGAAG	1 cut(s)	309
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	6 cut(s)	38, 41, 223, 611, 643, 644
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	275
AhdI	GACNNNNNGTC	1 cut(s)	417
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	319, 405
AluI	AGCT	2 cut(s)	319, 405
Alw26I	GTCTC	4 cut(s)	447, 498, 553, 738
AoxI	GGCC	2 cut(s)	161, 179
ApeKI	GCWGC	1 cut(s)	108
ArsI	GACNNNNNNTTYG	2 cut(s)	298, 330
AspS9I	GGNCC	1 cut(s)	647
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	18, 543
AvaII	GGWCC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	638
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	3 cut(s)	31, 305, 382
BceAI	ACGGC	2 cut(s)	462, 609
BciT130I	CCWGG	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	4 cut(s)	447, 498, 553, 738
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	4 cut(s)	72, 134, 417, 756
BfmI	CTRYAG	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	187
BglII	AGATCT	5 cut(s)	115, 169, 485, 542, 749
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	2 cut(s)	79, 409
Bme18I	GGWCC	1 cut(s)	647
BmeRI	GACNNNNNGTC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	4 cut(s)	243, 623, 648, 735
BmrFI	CCNGG	2 cut(s)	79, 409
BmrI	ACTGGG	2 cut(s)	246, 632
BmsI	GCATC	1 cut(s)	274
BmuI	ACTGGG	2 cut(s)	246, 632
BpiI	GAAGAC	1 cut(s)	442
BpuMI	CCSGG	1 cut(s)	409
BsaI	GGTCTC	2 cut(s)	447, 498
BsaJI	CCNNGG	5 cut(s)	35, 77, 78, 680, 728
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 613, 643
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 41, 223, 611, 643, 644
Bse1I	ACTGG	3 cut(s)	241, 265, 638
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	5 cut(s)	35, 77, 78, 680, 728
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	6 cut(s)	38, 41, 223, 611, 643, 644
BseNI	ACTGG	3 cut(s)	241, 265, 638
BseRI	GAGGAG	5 cut(s)	371, 435, 438, 507, 588
BseXI	GCAGC	1 cut(s)	120
BshFI	GGCC	2 cut(s)	163, 181
BsiSI	CCGG	2 cut(s)	409, 655
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	6 cut(s)	38, 41, 223, 611, 643, 644
BsmAI	GTCTC	4 cut(s)	447, 498, 553, 738
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	163, 181
Bso31I	GGTCTC	2 cut(s)	447, 498
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp143I	GATC	7 cut(s)	115, 169, 430, 485, 542, 593, 749
BspACI	CCGC	3 cut(s)	93, 175, 685
BspANI	GGCC	2 cut(s)	163, 181
BspLI	GGNNCC	4 cut(s)	243, 623, 648, 735
BspMI	ACCTGC	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	2 cut(s)	447, 498
BsrI	ACTGG	3 cut(s)	241, 265, 638
BssECI	CCNNGG	5 cut(s)	35, 77, 78, 680, 728
BssMI	GATC	7 cut(s)	115, 169, 430, 485, 542, 593, 749
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	680, 728
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	3 cut(s)	20, 343, 441
Bst6I	CTCTTC	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	161, 179
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	7 cut(s)	118, 172, 433, 488, 545, 596, 752
BstMAI	GTCTC	4 cut(s)	447, 498, 553, 738
BstMBI	GATC	7 cut(s)	115, 169, 430, 485, 542, 593, 749
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 156, 187, 293, 394
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	77, 407
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	5 cut(s)	115, 169, 485, 542, 749
BstYI	RGATCY	5 cut(s)	115, 169, 485, 542, 749
BsuRI	GGCC	2 cut(s)	163, 181
BtsCI	GGATG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	161, 179
Cfr13I	GGNCC	1 cut(s)	647
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	3 cut(s)	152, 503, 762
CviQI	GTAC	1 cut(s)	568
DpnI	GATC	7 cut(s)	117, 171, 432, 487, 544, 595, 751
DpnII	GATC	7 cut(s)	115, 169, 430, 485, 542, 593, 749
DraIII	CACNNNGTG	1 cut(s)	479
DrdI	GACNNNNNNGTC	1 cut(s)	66
DriI	GACNNNNNGTC	1 cut(s)	417
DseDI	GACNNNNNNGTC	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	700
Eco130I	CCWWGG	2 cut(s)	680, 728
Eco24I	GRGCYC	1 cut(s)	638
Eco31I	GGTCTC	2 cut(s)	447, 498
Eco32I	GATATC	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	680, 728
EcoT38I	GRGCYC	1 cut(s)	638
ErhI	CCWWGG	2 cut(s)	680, 728
FaeI	CATG	3 cut(s)	155, 506, 765
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	3 cut(s)	151, 502, 761
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	4 cut(s)	72, 134, 417, 756
GluI	GCNGC	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	163, 181
HapII	CCGG	2 cut(s)	409, 655
HgaI	GACGC	1 cut(s)	386
Hin1II	CATG	3 cut(s)	155, 506, 765
HpaII	CCGG	2 cut(s)	409, 655
HphI	GGTGA	2 cut(s)	18, 543
Hpy188I	TCNGA	3 cut(s)	283, 379, 633
Hpy188III	TCNNGA	4 cut(s)	332, 428, 540, 591
HpyAV	CCTTC	6 cut(s)	3, 140, 155, 288, 522, 558
HpyCH4III	ACNGT	3 cut(s)	20, 343, 441
HpyCH4V	TGCA	3 cut(s)	159, 353, 482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 156, 187, 293, 394
Hsp92II	CATG	3 cut(s)	155, 506, 765
Kzo9I	GATC	7 cut(s)	115, 169, 430, 485, 542, 593, 749
LmnI	GCTCC	6 cut(s)	241, 394, 410, 621, 657, 687
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	4 cut(s)	72, 134, 417, 756
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	7 cut(s)	117, 171, 432, 487, 544, 595, 751
MboI	GATC	7 cut(s)	115, 169, 430, 485, 542, 593, 749
MboII	GAAGA	8 cut(s)	110, 179, 302, 314, 379, 447, 708, 731
MflI	RGATCY	5 cut(s)	115, 169, 485, 542, 749
MhlI	GDGCHC	1 cut(s)	638
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	501
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	2 cut(s)	409, 655
MspR9I	CCNGG	2 cut(s)	79, 409
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	5 cut(s)	147, 156, 187, 293, 394
NciI	CCSGG	1 cut(s)	409
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	7 cut(s)	115, 169, 430, 485, 542, 593, 749
NlaIII	CATG	3 cut(s)	155, 506, 765
NlaIV	GGNNCC	4 cut(s)	243, 623, 648, 735
PasI	CCCWGGG	1 cut(s)	78
PfoI	TCCNGGA	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	4 cut(s)	243, 623, 648, 735
PspPI	GGNCC	1 cut(s)	647
PsuI	RGATCY	5 cut(s)	115, 169, 485, 542, 749
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	7 cut(s)	115, 169, 430, 485, 542, 593, 749
Sau96I	GGNCC	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	79, 409
SduI	GDGCHC	1 cut(s)	638
SetI	ASST	8 cut(s)	106, 147, 219, 280, 321, 407, 472, 569
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	93, 175, 685
SspMI	CTAG	4 cut(s)	72, 134, 417, 756
StyD4I	CCNGG	2 cut(s)	77, 407
StyI	CCWWGG	2 cut(s)	680, 728
TaaI	ACNGT	3 cut(s)	20, 343, 441
TaqI	TCGA	4 cut(s)	100, 421, 433, 592
TaqII	GACCGA	1 cut(s)	480
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	732
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	647
XagI	CCTNNNNNAGG	1 cut(s)	221
XspI	CTAG	4 cut(s)	72, 134, 417, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.