Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002900.1

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

17545 .. 20093

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002900.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgaggggaaggagttacagtccatcaccaccaccaccaccaccaaggggatatggtaggagaggacggagtcctagcccaaggggtcgttatggtggtcatagtagagatagagatcttcctacaagcctcctagttcgtaaccttcgccatgattgcaggccagatgatcttcgccgtccatttgggcagtttggtcctctgaaggacatttacctgccaaaggattattattcagggcaacctcgtggtttcggttttgtccaatttgttgatcctactgatgctgcggaggctaaatttcaaatggatggtcacgttcttcttggtcgcgaggtaactgttgtatttgcagaggagaacaggaagaagccgtctgatatgaggcaaagggagggtccaagctccaggggtagtggtcgacatcgtgatcgaagagggtctcctccacgctattcacgctctccacgatattcccgatctccacctccacgtcatgcaagatctcggccccgcagcccttcttatgattcccctcccccaaaaagaagggaatattcgagatctgtctcacccccagggagaaggtacagtagagagagatcgttttcccgatctcctcctcaaccatataatggctcaaggggccgcagtcagagtccagttaggggtccaagccggagcagaagccagagtccaaggccaattggtagaagcttgactggcaggccacaaagtcctgatcatgaagattactcaagggaaccaaatggagacaggtctcctggtccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

264

Amino Acids

30.05

Weight (kDa)

11.47

Isoelectric Point (pI)

106.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	225
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	421
AccII	CGCG	1 cut(s)	333
AciI	CCGC	3 cut(s)	290, 514, 649
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	4 cut(s)	47, 223, 635, 668
AgsI	TTSAA	1 cut(s)	305
AjiI	CACGTC	1 cut(s)	494
AjnI	CCWGG	3 cut(s)	407, 577, 784
AluBI	AGCT	2 cut(s)	405, 717
AluI	AGCT	2 cut(s)	405, 717
Alw26I	GTCTC	4 cut(s)	447, 574, 768, 786
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	5 cut(s)	161, 509, 646, 701, 728
ApeKI	GCWGC	2 cut(s)	287, 516
ApoI	RAATTY	1 cut(s)	299
ArsI	GACNNNNNNTTYG	4 cut(s)	298, 330, 382, 414
AspS9I	GGNCC	6 cut(s)	197, 398, 510, 646, 671, 788
AsuHPI	GGTGA	2 cut(s)	18, 564
AvaII	GGWCC	4 cut(s)	197, 398, 671, 788
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BauI	CACGAG	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	274, 528
BccI	CCATC	2 cut(s)	31, 305
BceAI	ACGGC	2 cut(s)	162, 358
BciT130I	CCWGG	3 cut(s)	409, 579, 786
BclI	TGATCA	1 cut(s)	742
BcoDI	GTCTC	4 cut(s)	447, 574, 768, 786
BfaI	CTAG	2 cut(s)	75, 134
BfuAI	ACCTGC	1 cut(s)	225
BglII	AGATCT	3 cut(s)	115, 503, 563
BisI	GCNGC	3 cut(s)	288, 517, 649
BlsI	GCNGC	3 cut(s)	289, 518, 650
Bme1390I	CCNGG	3 cut(s)	409, 579, 786
Bme18I	GGWCC	4 cut(s)	197, 398, 671, 788
BmgBI	CACGTC	1 cut(s)	494
BmgT120I	GGNCC	6 cut(s)	197, 398, 510, 646, 671, 788
BmiI	GGNNCC	5 cut(s)	399, 512, 647, 672, 765
BmrFI	CCNGG	3 cut(s)	409, 579, 786
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	391
BpuEI	CTTGAG	2 cut(s)	625, 742
BsaBI	GATNNNNATC	1 cut(s)	114
BsaI	GGTCTC	2 cut(s)	447, 786
BsaJI	CCNNGG	6 cut(s)	44, 80, 408, 577, 578, 698
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 223, 635, 668
Bse1I	ACTGG	2 cut(s)	662, 727
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	3 cut(s)	409, 579, 786
BseDI	CCNNGG	6 cut(s)	44, 80, 408, 577, 578, 698
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	4 cut(s)	47, 223, 635, 668
BseNI	ACTGG	2 cut(s)	662, 727
BseRI	GAGGAG	4 cut(s)	371, 435, 609, 612
BseXI	GCAGC	2 cut(s)	274, 528
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	5 cut(s)	163, 511, 648, 703, 730
BsiSI	CCGG	1 cut(s)	679
BslI	CCNNNNNNNGG	4 cut(s)	47, 223, 635, 668
BsmAI	GTCTC	4 cut(s)	447, 574, 768, 786
BsnI	GGCC	5 cut(s)	163, 511, 648, 703, 730
Bso31I	GGTCTC	2 cut(s)	447, 786
Bsp68I	TCGCGA	1 cut(s)	333
BspACI	CCGC	3 cut(s)	290, 514, 649
BspANI	GGCC	5 cut(s)	163, 511, 648, 703, 730
BspFNI	CGCG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	5 cut(s)	399, 512, 647, 672, 765
BspMI	ACCTGC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	269
BspTNI	GGTCTC	2 cut(s)	447, 786
BsrI	ACTGG	2 cut(s)	662, 727
BssECI	CCNNGG	6 cut(s)	44, 80, 408, 577, 578, 698
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	3 cut(s)	44, 80, 698
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	409, 579, 786
Bst4CI	ACNGT	3 cut(s)	20, 343, 593
Bst6I	CTCTTC	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	161, 728
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	333
BstMAI	GTCTC	4 cut(s)	447, 574, 768, 786
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 293, 459, 645, 723
BstNI	CCWGG	3 cut(s)	409, 579, 786
BstSCI	CCNGG	3 cut(s)	407, 577, 784
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	274, 528
BstX2I	RGATCY	3 cut(s)	115, 503, 563
BstYI	RGATCY	3 cut(s)	115, 503, 563
BsuRI	GGCC	5 cut(s)	163, 511, 648, 703, 730
BtrI	CACGTC	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	316
BtuMI	TCGCGA	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	161, 728
CciI	TCATGA	1 cut(s)	745
Cfr13I	GGNCC	6 cut(s)	197, 398, 510, 646, 671, 788
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	4 cut(s)	152, 497, 746, 792
CviQI	GTAC	1 cut(s)	589
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco130I	CCWWGG	3 cut(s)	44, 80, 698
Eco31I	GGTCTC	2 cut(s)	447, 786
Eco47I	GGWCC	4 cut(s)	197, 398, 671, 788
Eco57I	CTGAAG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	3 cut(s)	407, 577, 784
EcoT14I	CCWWGG	3 cut(s)	44, 80, 698
ErhI	CCWWGG	3 cut(s)	44, 80, 698
FaeI	CATG	4 cut(s)	155, 500, 749, 795
FatI	CATG	4 cut(s)	151, 496, 745, 791
FauI	CCCGC	1 cut(s)	521
FbaI	TGATCA	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	288, 517, 649
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	288, 517, 649
FspBI	CTAG	2 cut(s)	75, 134
GluI	GCNGC	3 cut(s)	288, 517, 649
GsuI	CTGGAG	1 cut(s)	391
HaeIII	GGCC	5 cut(s)	163, 511, 648, 703, 730
HapII	CCGG	1 cut(s)	679
Hin1II	CATG	4 cut(s)	155, 500, 749, 795
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	4 cut(s)	70, 530, 658, 694
HpaII	CCGG	1 cut(s)	679
HphI	GGTGA	2 cut(s)	18, 564
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	204, 379, 657
Hpy188III	TCNNGA	7 cut(s)	332, 428, 477, 561, 612, 740, 746
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	6 cut(s)	3, 155, 199, 531, 543, 579
HpyCH4III	ACNGT	3 cut(s)	20, 343, 593
HpyCH4IV	ACGT	2 cut(s)	318, 493
HpyCH4V	TGCA	3 cut(s)	159, 353, 500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 293, 459, 645, 723
HpySE526I	ACGT	2 cut(s)	318, 493
Hsp92II	CATG	4 cut(s)	155, 500, 749, 795
Ksp22I	TGATCA	1 cut(s)	742
LmnI	GCTCC	2 cut(s)	410, 681
Lsp1109I	GCAGC	2 cut(s)	274, 528
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	75, 134
MaeII	ACGT	2 cut(s)	318, 493
MaeIII	GTNAC	4 cut(s)	14, 140, 314, 337
MboII	GAAGA	6 cut(s)	110, 164, 314, 379, 447, 761
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	3 cut(s)	115, 503, 563
MluCI	AATT	3 cut(s)	266, 299, 705
MlyI	GAGTC	3 cut(s)	79, 667, 703
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	3 cut(s)	409, 579, 786
MunI	CAATTG	1 cut(s)	705
MvaI	CCWGG	3 cut(s)	409, 579, 786
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	156, 293, 459, 645, 723
NlaIII	CATG	4 cut(s)	155, 500, 749, 795
NlaIV	GGNNCC	5 cut(s)	399, 512, 647, 672, 765
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	1 cut(s)	314
NruI	TCGCGA	1 cut(s)	333
PagI	TCATGA	1 cut(s)	745
PasI	CCCWGGG	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	2 cut(s)	466, 475
PfeI	GAWTC	1 cut(s)	530
PflFI	GACNNNGTC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	3 cut(s)	289, 518, 650
PleI	GAGTC	3 cut(s)	78, 666, 702
PpsI	GAGTC	3 cut(s)	78, 666, 702
Psp6I	CCWGG	3 cut(s)	407, 577, 784
PspGI	CCWGG	3 cut(s)	407, 577, 784
PspN4I	GGNNCC	5 cut(s)	399, 512, 647, 672, 765
PspPI	GGNCC	6 cut(s)	197, 398, 510, 646, 671, 788
PsuI	RGATCY	3 cut(s)	115, 503, 563
PsyI	GACNNNGTC	1 cut(s)	69
RruI	TCGCGA	1 cut(s)	333
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
SalI	GTCGAC	1 cut(s)	420
SatI	GCNGC	3 cut(s)	288, 517, 649
Sau96I	GGNCC	6 cut(s)	197, 398, 510, 646, 671, 788
SchI	GAGTC	3 cut(s)	79, 667, 703
ScrFI	CCNGG	3 cut(s)	409, 579, 786
SfaNI	GCATC	1 cut(s)	274
SinI	GGWCC	4 cut(s)	197, 398, 671, 788
SmlI	CTYRAG	2 cut(s)	640, 757
SmoI	CTYRAG	2 cut(s)	640, 757
Sse9I	AATT	3 cut(s)	266, 299, 705
SsiI	CCGC	3 cut(s)	290, 514, 649
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	2 cut(s)	75, 134
StyD4I	CCNGG	3 cut(s)	407, 577, 784
StyI	CCWWGG	3 cut(s)	44, 80, 698
TaaI	ACNGT	3 cut(s)	20, 343, 593
TaiI	ACGT	2 cut(s)	321, 496
TaqI	TCGA	3 cut(s)	421, 433, 560
TasI	AATT	3 cut(s)	266, 299, 705
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	1 cut(s)	530
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	287, 516
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	762
TspGWI	ACGGA	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	69
Van91I	CCANNNNNTGG	1 cut(s)	635
VpaK11BI	GGWCC	4 cut(s)	197, 398, 671, 788
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	421
XspI	CTAG	2 cut(s)	75, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.