Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

86200982 .. 86203521

Gene Structure 2540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGGGGAAGGAGTTACAGTCCATCACCACCACCACCAAGGGGATATGGTAGGAGAGGACGGAGTCCTAGCCCAAGGGGTCGTTATGGTGGTCATAGTAGAGATAGAGATCTTCCTACAAGCCTCCTAGTTCGTAACCTTCGCCATGATTGCAGGCCAGATGATCTTCGCCGTCCATTTGGGCAGTTTGGTCCTCTGAAGGACATTTACCTGCCAAAGGATTATTATTCAGGGCAACCTCGTGGTTTCGGTTTTGTCCAATTTGTTGATCCTACTGATGCTGCGGAGGCTAAATTTCAAATGGATGGTCACGTTCTTCTTGGTCGCGAGGTAACTGTTGTATTTGCAGAGGAGAACAGGAAGAAGCCGTCTGATATGAGGCAAAGGGAGGGTCCAAGCTCCAGGGGTAGTGGTCGACATCGTGATCGAAGAGGGTCTCCTCCACGCTATTCACGCTCTCCACGATATTCCCGATCTCCACCTCCACGTCATGCAAGATCTCGGCCCCGCAGCCCTTCTTATGATTCCCCTCCCCCAAAAAGAAGGGAATATTCGAGATCTGTCTCACCCCCAGGGAGAAGGTACAGTAGAGAGAGATCGTTTTCCCGATCTCCTCCTCAACCATATAATGGCTCAAGGGGCCGCAGTCAGAGTCCAGTTAGGGGTCCAAGCCGGAGCAGAAGCCAGAGTCCAAGGCAAATTGGTAGAAGCTTGGGTGGCAGGCCACAGAGTCCTGATCATGAAGATTACTCAAGGGAACCAAATGGAGACAGGTCTCCTAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

262

Amino Acids

29.87

Weight (kDa)

11.47

Isoelectric Point (pI)

108.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	42 - 111	7.6e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	415
AccII	CGCG	1 cut(s)	327
AciI	CCGC	3 cut(s)	284, 508, 643
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	4 cut(s)	41, 217, 629, 662
AgsI	TTSAA	1 cut(s)	299
AjiI	CACGTC	1 cut(s)	488
AjnI	CCWGG	2 cut(s)	401, 571
AluBI	AGCT	2 cut(s)	399, 711
AluI	AGCT	2 cut(s)	399, 711
Alw26I	GTCTC	4 cut(s)	441, 568, 762, 780
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	4 cut(s)	155, 503, 640, 722
ApeKI	GCWGC	2 cut(s)	281, 510
ApoI	RAATTY	1 cut(s)	293
ArsI	GACNNNNNNTTYG	4 cut(s)	292, 324, 376, 408
AspS9I	GGNCC	5 cut(s)	191, 392, 504, 640, 665
AsuHPI	GGTGA	2 cut(s)	18, 558
AvaII	GGWCC	3 cut(s)	191, 392, 665
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BauI	CACGAG	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	268, 522
BccI	CCATC	2 cut(s)	31, 299
BceAI	ACGGC	2 cut(s)	156, 352
BciT130I	CCWGG	2 cut(s)	403, 573
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	4 cut(s)	441, 568, 762, 780
BfaI	CTAG	3 cut(s)	69, 128, 780
BfuAI	ACCTGC	1 cut(s)	219
BglII	AGATCT	3 cut(s)	109, 497, 557
BisI	GCNGC	3 cut(s)	282, 511, 643
BlsI	GCNGC	3 cut(s)	283, 512, 644
Bme1390I	CCNGG	2 cut(s)	403, 573
Bme18I	GGWCC	3 cut(s)	191, 392, 665
BmgBI	CACGTC	1 cut(s)	488
BmgT120I	GGNCC	5 cut(s)	191, 392, 504, 640, 665
BmiI	GGNNCC	5 cut(s)	393, 506, 641, 666, 759
BmrFI	CCNGG	2 cut(s)	403, 573
BmsI	GCATC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	385
BpuEI	CTTGAG	2 cut(s)	619, 736
BsaBI	GATNNNNATC	1 cut(s)	108
BsaI	GGTCTC	2 cut(s)	441, 780
BsaJI	CCNNGG	6 cut(s)	38, 74, 402, 571, 572, 692
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 217, 629, 662
Bse1I	ACTGG	1 cut(s)	656
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	403, 573
BseDI	CCNNGG	6 cut(s)	38, 74, 402, 571, 572, 692
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	4 cut(s)	41, 217, 629, 662
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	4 cut(s)	365, 429, 603, 606
BseXI	GCAGC	2 cut(s)	268, 522
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	4 cut(s)	157, 505, 642, 724
BsiSI	CCGG	1 cut(s)	673
BslI	CCNNNNNNNGG	4 cut(s)	41, 217, 629, 662
BsmAI	GTCTC	4 cut(s)	441, 568, 762, 780
BsnI	GGCC	4 cut(s)	157, 505, 642, 724
Bso31I	GGTCTC	2 cut(s)	441, 780
Bsp68I	TCGCGA	1 cut(s)	327
BspACI	CCGC	3 cut(s)	284, 508, 643
BspANI	GGCC	4 cut(s)	157, 505, 642, 724
BspFNI	CGCG	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	5 cut(s)	393, 506, 641, 666, 759
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	263
BspTNI	GGTCTC	2 cut(s)	441, 780
BsrI	ACTGG	1 cut(s)	656
BssECI	CCNNGG	6 cut(s)	38, 74, 402, 571, 572, 692
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	3 cut(s)	38, 74, 692
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	403, 573
Bst4CI	ACNGT	3 cut(s)	20, 337, 587
Bst6I	CTCTTC	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	155, 722
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	327
BstMAI	GTCTC	4 cut(s)	441, 568, 762, 780
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 287, 453, 639, 717
BstNI	CCWGG	2 cut(s)	403, 573
BstSCI	CCNGG	2 cut(s)	401, 571
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	268, 522
BstX2I	RGATCY	3 cut(s)	109, 497, 557
BstYI	RGATCY	3 cut(s)	109, 497, 557
BsuRI	GGCC	4 cut(s)	157, 505, 642, 724
BtrI	CACGTC	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	310
BtuMI	TCGCGA	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	155, 722
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	5 cut(s)	191, 392, 504, 640, 665
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	4 cut(s)	146, 491, 740, 786
CviQI	GTAC	1 cut(s)	583
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Eco130I	CCWWGG	3 cut(s)	38, 74, 692
Eco31I	GGTCTC	2 cut(s)	441, 780
Eco47I	GGWCC	3 cut(s)	191, 392, 665
Eco57I	CTGAAG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	401, 571
EcoT14I	CCWWGG	3 cut(s)	38, 74, 692
ErhI	CCWWGG	3 cut(s)	38, 74, 692
FaeI	CATG	4 cut(s)	149, 494, 743, 789
FatI	CATG	4 cut(s)	145, 490, 739, 785
FauI	CCCGC	1 cut(s)	515
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	282, 511, 643
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	282, 511, 643
FspBI	CTAG	3 cut(s)	69, 128, 780
GluI	GCNGC	3 cut(s)	282, 511, 643
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	4 cut(s)	157, 505, 642, 724
HapII	CCGG	1 cut(s)	673
Hin1II	CATG	4 cut(s)	149, 494, 743, 789
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	5 cut(s)	64, 524, 652, 688, 730
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	2 cut(s)	18, 558
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	3 cut(s)	198, 373, 651
Hpy188III	TCNNGA	7 cut(s)	326, 422, 471, 555, 606, 734, 740
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	6 cut(s)	3, 149, 193, 525, 537, 573
HpyCH4III	ACNGT	3 cut(s)	20, 337, 587
HpyCH4IV	ACGT	2 cut(s)	312, 487
HpyCH4V	TGCA	3 cut(s)	153, 347, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 287, 453, 639, 717
HpySE526I	ACGT	2 cut(s)	312, 487
Hsp92II	CATG	4 cut(s)	149, 494, 743, 789
Ksp22I	TGATCA	1 cut(s)	736
LmnI	GCTCC	2 cut(s)	404, 675
Lsp1109I	GCAGC	2 cut(s)	268, 522
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	3 cut(s)	69, 128, 780
MaeII	ACGT	2 cut(s)	312, 487
MaeIII	GTNAC	4 cut(s)	14, 134, 308, 331
MboII	GAAGA	6 cut(s)	104, 158, 308, 373, 441, 755
MflI	RGATCY	3 cut(s)	109, 497, 557
MluCI	AATT	3 cut(s)	260, 293, 699
MlyI	GAGTC	4 cut(s)	73, 661, 697, 739
MspI	CCGG	1 cut(s)	673
MspR9I	CCNGG	2 cut(s)	403, 573
MvaI	CCWGG	2 cut(s)	403, 573
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	5 cut(s)	150, 287, 453, 639, 717
NlaIII	CATG	4 cut(s)	149, 494, 743, 789
NlaIV	GGNNCC	5 cut(s)	393, 506, 641, 666, 759
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	308
NruI	TCGCGA	1 cut(s)	327
PagI	TCATGA	1 cut(s)	739
PasI	CCCWGGG	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	2 cut(s)	460, 469
PfeI	GAWTC	1 cut(s)	524
PflFI	GACNNNGTC	1 cut(s)	63
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	3 cut(s)	283, 512, 644
PleI	GAGTC	4 cut(s)	72, 660, 696, 738
PpsI	GAGTC	4 cut(s)	72, 660, 696, 738
Psp6I	CCWGG	2 cut(s)	401, 571
PspGI	CCWGG	2 cut(s)	401, 571
PspN4I	GGNNCC	5 cut(s)	393, 506, 641, 666, 759
PspPI	GGNCC	5 cut(s)	191, 392, 504, 640, 665
PsuI	RGATCY	3 cut(s)	109, 497, 557
PsyI	GACNNNGTC	1 cut(s)	63
RruI	TCGCGA	1 cut(s)	327
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SalI	GTCGAC	1 cut(s)	414
SatI	GCNGC	3 cut(s)	282, 511, 643
Sau96I	GGNCC	5 cut(s)	191, 392, 504, 640, 665
SchI	GAGTC	4 cut(s)	73, 661, 697, 739
ScrFI	CCNGG	2 cut(s)	403, 573
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	3 cut(s)	191, 392, 665
SmlI	CTYRAG	2 cut(s)	634, 751
SmoI	CTYRAG	2 cut(s)	634, 751
Sse9I	AATT	3 cut(s)	260, 293, 699
SsiI	CCGC	3 cut(s)	284, 508, 643
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	3 cut(s)	69, 128, 780
StyD4I	CCNGG	2 cut(s)	401, 571
StyI	CCWWGG	3 cut(s)	38, 74, 692
TaaI	ACNGT	3 cut(s)	20, 337, 587
TaiI	ACGT	2 cut(s)	315, 490
TaqI	TCGA	3 cut(s)	415, 427, 554
TasI	AATT	3 cut(s)	260, 293, 699
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	1 cut(s)	524
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	2 cut(s)	281, 510
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	756
TspGWI	ACGGA	1 cut(s)	76
Tth111I	GACNNNGTC	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	3 cut(s)	191, 392, 665
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	3 cut(s)	69, 128, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.