Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

735164 .. 737704

Gene Structure 2541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1008800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTTCCAACCTCGTGGCTTTGGTTTTGTCCAGTTTGTTGAACCTGCTGATGCTGAAGAGGCTAAATATCAAATGGATGGTCAGCTTCTTCTTGGTCGGGAGGTAACTGTTGTATTTGCAGAGGAGAACAGGAAGAAGCCATCTGATATGAGGCATAGGGAGCGTTCAAGCTCCAGGACTACTAGTCGATATCGTGATCGAAGACGGTCTCCTCCTCGCTATTCTCGCTCTCCACGATATTCCCGTTCTCCACCTCCACGCCGTGCAAGATCTCGATCTCACAGCCGTGGTTATTACTCTCCTCCAAAACGAAGGGATTATTCCAGATCTGTCTCACCCCAAGAGAGAAGGTACAGCAGGGAGAAGTCGTTTTCTCGATCTCCTCCACCATATGAGGGGTCAAGGAGCCGTAGTCAGAGCCCAGTTAGGGGTCCAAGCCGGAGCAGAAGCAGAAGCCATAGTCCAAGGCGGAACATAAGAAGAAGCCGAAGCCCTATCAATGAAGGTCACCCGAGGGCACCAATTGGAGACAGATCTCCTAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

183

Amino Acids

21.39

Weight (kDa)

11.73

Isoelectric Point (pI)

135.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	3 - 35	2.1e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	517
AciI	CCGC	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	75
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	395, 427, 428
AgsI	TTSAA	2 cut(s)	41, 168
AhdI	GACNNNNNGTC	1 cut(s)	183
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	173
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	85, 171
AluI	AGCT	2 cut(s)	85, 171
Alw26I	GTCTC	3 cut(s)	213, 337, 522
Ama87I	CYCGRG	1 cut(s)	511
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	327, 500
AvaI	CYCGRG	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	422
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	208
BccI	CCATC	2 cut(s)	71, 148
BceAI	ACGGC	3 cut(s)	246, 270, 393
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	213, 337, 522
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	2 cut(s)	183, 540
BfuAI	ACCTGC	1 cut(s)	52
BglII	AGATCT	3 cut(s)	269, 326, 533
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	431
BmeRI	GACNNNNNGTC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	3 cut(s)	407, 432, 519
BmrFI	CCNGG	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	286, 464, 512
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 397, 427
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 427, 428
Bse1I	ACTGG	2 cut(s)	31, 422
Bse8I	GATNNNNATC	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	3 cut(s)	286, 464, 512
BseGI	GGATG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	274
BseLI	CCNNNNNNNGG	3 cut(s)	395, 427, 428
BseNI	ACTGG	2 cut(s)	31, 422
BseRI	GAGGAG	5 cut(s)	137, 201, 204, 291, 372
BseSI	GKGCMC	1 cut(s)	520
BshNI	GGYRCC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	439
BslI	CCNNNNNNNGG	3 cut(s)	395, 427, 428
BsmAI	GTCTC	3 cut(s)	213, 337, 522
Bso31I	GGTCTC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	422, 520
Bsp143I	GATC	6 cut(s)	196, 269, 275, 326, 377, 533
BspACI	CCGC	1 cut(s)	469
BspLI	GGNNCC	3 cut(s)	407, 432, 519
BspMI	ACCTGC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	31, 422
BssECI	CCNNGG	3 cut(s)	286, 464, 512
BssMI	GATC	6 cut(s)	196, 269, 275, 326, 377, 533
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	464
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	109, 207
Bst6I	CTCTTC	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	286
BstEII	GGTNACC	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	6 cut(s)	199, 272, 278, 329, 380, 536
BstMAI	GTCTC	3 cut(s)	213, 337, 522
BstMBI	GATC	6 cut(s)	196, 269, 275, 326, 377, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 160, 225
BstNI	CCWGG	1 cut(s)	175
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	3 cut(s)	269, 326, 533
BstXI	CCANNNNNNTGG	1 cut(s)	14
BstYI	RGATCY	3 cut(s)	269, 326, 533
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	546
CviQI	GTAC	1 cut(s)	352
DpnI	GATC	6 cut(s)	198, 271, 277, 328, 379, 535
DpnII	GATC	6 cut(s)	196, 269, 275, 326, 377, 533
DraIII	CACNNNGTG	1 cut(s)	263
DriI	GACNNNNNGTC	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	511
Eco91I	GGTNACC	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	173
EcoRV	GATATC	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	1 cut(s)	549
FaiI	YATR	7 cut(s)	149, 156, 391, 393, 459, 476, 547
FatI	CATG	1 cut(s)	545
FauNDI	CATATG	1 cut(s)	391
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	422
FspBI	CTAG	2 cut(s)	183, 540
GsuI	CTGGAG	1 cut(s)	157
HapII	CCGG	1 cut(s)	439
Hin1II	CATG	1 cut(s)	549
HpaII	CCGG	1 cut(s)	439
HphI	GGTGA	2 cut(s)	327, 500
Hpy188I	TCNGA	2 cut(s)	145, 417
Hpy188III	TCNNGA	5 cut(s)	98, 194, 273, 324, 375
HpyAV	CCTTC	3 cut(s)	306, 342, 497
HpyCH4III	ACNGT	2 cut(s)	109, 207
HpyCH4V	TGCA	2 cut(s)	119, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 160, 225
Hsp92II	CATG	1 cut(s)	549
Kzo9I	GATC	6 cut(s)	196, 269, 275, 326, 377, 533
LmnI	GCTCC	4 cut(s)	160, 176, 405, 441
LpnPI	CCDG	9 cut(s)	44, 57, 115, 160, 187, 337, 343, 435, 452
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	183, 540
MaeIII	GTNAC	2 cut(s)	103, 506
MalI	GATC	6 cut(s)	198, 271, 277, 328, 379, 535
MboI	GATC	6 cut(s)	196, 269, 275, 326, 377, 533
MboII	GAAGA	5 cut(s)	68, 80, 145, 213, 492
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	3 cut(s)	269, 326, 533
MhlI	GDGCHC	2 cut(s)	422, 520
MluCI	AATT	1 cut(s)	522
MmeI	TCCRAC	1 cut(s)	31
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	1 cut(s)	175
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	3 cut(s)	59, 160, 225
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	6 cut(s)	196, 269, 275, 326, 377, 533
NlaIII	CATG	1 cut(s)	549
NlaIV	GGNNCC	3 cut(s)	407, 432, 519
NmuCI	GTSAC	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	232, 241
PfoI	TCCNGGA	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	173
PspEI	GGTNACC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	3 cut(s)	407, 432, 519
PspPI	GGNCC	1 cut(s)	431
PsuI	RGATCY	3 cut(s)	269, 326, 533
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	285
Sau3AI	GATC	6 cut(s)	196, 269, 275, 326, 377, 533
Sau96I	GGNCC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	2 cut(s)	422, 520
SetI	ASST	8 cut(s)	13, 46, 87, 105, 173, 256, 353, 508
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	285
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	1 cut(s)	522
SsiI	CCGC	1 cut(s)	469
SspMI	CTAG	2 cut(s)	183, 540
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	2 cut(s)	109, 207
TaqI	TCGA	4 cut(s)	187, 199, 274, 376
TasI	AATT	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	431
XspI	CTAG	2 cut(s)	183, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.