Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

22780720 .. 22783413

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGACTATGGAGTGATATTTTGTGCAGGAGAGAGAAGAATGATGGGGAGAAGCTACAGTTACAGCCCTTCACCGCCGAGAGGTTACAGCAGACGACGTCGTAGCCCTAGCCCTAGAGGCCGCTACGGAGGAGGCCGTGCTAGGGATCTTCCCACCAGTCTTTTGGTTCGCAATCTTCGCCATGACTGCCGGCCTGAAGATTTACGTGGGCCGTTCGGGCAATTTGGTCCCCTCAAGGACATCTACTTGCCTAGGGATTATTATACTGGGGATCCACGTGGCTTTGGATTTGTTCAGTTTGTAGACCCTGCTGATGCTGCAGATGCCAAGCACCATATGGATGGGCAAATTCTTCTTGGGCGGGAATTGACAGTTGTATTTGCTGAGGAGAATAGGAAGAAACCCTCGGAAATGAAGGCAAGAGACCGGGGTCAGTCATATGATAGCAGGCGGAGCATTTATTCTCGTTCACCACGCTATGCTCAAACCTACTCTCGAAGTCCAGGTTATTATTCACCCTCCCCTAGGAGAAGGCGGTACTCAAGGTCGATTTCACCAAGAGGTAGGAGGTACCGGGAGCGATCATACTCAAGGTCTCCCTATGGTTCAAGGAGCCGCAGTCGAAGTCGGAGCTATAGCAGGAGCCGCAGTCGAAGCCTGGACTACTCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

224

Amino Acids

26.19

Weight (kDa)

11.01

Isoelectric Point (pI)

104.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	54 - 123	3.6e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	100
Acc65I	GGTACC	1 cut(s)	570
AccB1I	GGYRCC	1 cut(s)	570
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	7 cut(s)	74, 121, 361, 451, 535, 616, 646
AclWI	GGATC	3 cut(s)	153, 266, 279
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	216
AcvI	CACGTG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	97
AfaI	GTAC	2 cut(s)	539, 572
AfiI	CCNNNNNNNGG	3 cut(s)	80, 142, 525
AgsI	TTSAA	1 cut(s)	609
AjnI	CCWGG	2 cut(s)	502, 657
AluBI	AGCT	2 cut(s)	54, 633
AluI	AGCT	2 cut(s)	54, 633
Alw26I	GTCTC	2 cut(s)	417, 600
AlwI	GGATC	3 cut(s)	153, 266, 279
AoxI	GGCC	4 cut(s)	118, 133, 191, 209
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	348
Asp718I	GGTACC	1 cut(s)	570
AspA2I	CCTAGG	2 cut(s)	251, 524
AspS9I	GGNCC	2 cut(s)	209, 227
AsuC2I	CCSGG	2 cut(s)	428, 575
AsuHPI	GGTGA	4 cut(s)	63, 462, 507, 546
AvaII	GGWCC	1 cut(s)	227
AvrII	CCTAGG	2 cut(s)	251, 524
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	570
BbrPI	CACGTG	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	2 cut(s)	37, 335
BceAI	ACGGC	2 cut(s)	120, 196
BciT130I	CCWGG	2 cut(s)	504, 659
BcnI	CCSGG	2 cut(s)	428, 575
BcoDI	GTCTC	2 cut(s)	417, 600
BfaI	CTAG	6 cut(s)	108, 114, 141, 252, 525, 673
BfmI	CTRYAG	3 cut(s)	55, 318, 634
BglI	GCCNNNNNGGC	2 cut(s)	117, 217
BisI	GCNGC	4 cut(s)	121, 318, 616, 646
BlnI	CCTAGG	2 cut(s)	251, 524
BlsI	GCNGC	4 cut(s)	122, 319, 617, 647
Bme1390I	CCNGG	4 cut(s)	428, 504, 575, 659
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	209, 227
BmiI	GGNNCC	5 cut(s)	229, 273, 572, 614, 644
BmrFI	CCNGG	4 cut(s)	428, 504, 575, 659
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	304, 313
BmuI	ACTGGG	1 cut(s)	276
BoxI	GACNNNNGTC	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	3 cut(s)	218, 526, 574
BpuMI	CCSGG	2 cut(s)	428, 575
BsaAI	YACGTR	2 cut(s)	206, 278
BsaHI	GRCGYC	1 cut(s)	97
BsaI	GGTCTC	2 cut(s)	417, 600
BsaJI	CCNNGG	4 cut(s)	251, 405, 427, 524
BsaXI	ACNNNNNCTCC	4 cut(s)	604, 634, 634, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 142, 525
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	156, 271
BseBI	CCWGG	2 cut(s)	504, 659
BseDI	CCNNGG	4 cut(s)	251, 405, 427, 524
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	3 cut(s)	80, 142, 525
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	156, 271
BseRI	GAGGAG	2 cut(s)	144, 401
BseXI	GCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	45
BshFI	GGCC	4 cut(s)	120, 135, 193, 211
BshNI	GGYRCC	1 cut(s)	570
BsiSI	CCGG	3 cut(s)	190, 427, 574
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	3 cut(s)	80, 142, 525
BsmAI	GTCTC	2 cut(s)	417, 600
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	4 cut(s)	120, 135, 193, 211
Bso31I	GGTCTC	2 cut(s)	417, 600
Bsp143I	GATC	3 cut(s)	145, 271, 581
BspACI	CCGC	7 cut(s)	74, 121, 361, 451, 535, 616, 646
BspANI	GGCC	4 cut(s)	120, 135, 193, 211
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	5 cut(s)	229, 273, 572, 614, 644
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	3 cut(s)	153, 266, 279
BspT107I	GGYRCC	1 cut(s)	570
BspTNI	GGTCTC	2 cut(s)	417, 600
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	156, 271
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	4 cut(s)	251, 405, 427, 524
BssMI	GATC	3 cut(s)	145, 271, 581
BssNI	GRCGYC	1 cut(s)	97
BssT1I	CCWWGG	2 cut(s)	251, 524
Bst2UI	CCWGG	2 cut(s)	504, 659
Bst4CI	ACNGT	2 cut(s)	59, 373
BstACI	GRCGYC	1 cut(s)	97
BstBAI	YACGTR	2 cut(s)	206, 278
BstC8I	GCNNGC	2 cut(s)	191, 449
BstDEI	CTNAG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	523
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	3 cut(s)	148, 274, 584
BstMAI	GTCTC	2 cut(s)	417, 600
BstMBI	GATC	3 cut(s)	145, 271, 581
BstMWI	GCNNNNNNNGC	9 cut(s)	117, 177, 186, 217, 317, 323, 453, 645, 654
BstNI	CCWGG	2 cut(s)	504, 659
BstPAI	GACNNNNGTC	1 cut(s)	429
BstSCI	CCNGG	4 cut(s)	426, 502, 573, 657
BstSFI	CTRYAG	3 cut(s)	55, 318, 634
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	2 cut(s)	145, 271
BstXI	CCANNNNNNTGG	2 cut(s)	163, 341
BstYI	RGATCY	2 cut(s)	145, 271
BsuRI	GGCC	4 cut(s)	120, 135, 193, 211
BtsCI	GGATG	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	191, 449
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	209, 227
Csp6I	GTAC	2 cut(s)	538, 571
CviAII	CATG	1 cut(s)	182
CviQI	GTAC	2 cut(s)	538, 571
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	3 cut(s)	147, 273, 583
DpnII	GATC	3 cut(s)	145, 271, 581
EciI	GGCGGA	1 cut(s)	466
Eco130I	CCWWGG	2 cut(s)	251, 524
Eco31I	GGTCTC	2 cut(s)	417, 600
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	216
Eco72I	CACGTG	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	502, 657
EcoT14I	CCWWGG	2 cut(s)	251, 524
ErhI	CCWWGG	2 cut(s)	251, 524
FaeI	CATG	1 cut(s)	185
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	1 cut(s)	181
FauI	CCCGC	1 cut(s)	354
FauNDI	CATATG	2 cut(s)	336, 439
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	4 cut(s)	121, 318, 616, 646
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	4 cut(s)	121, 318, 616, 646
FspBI	CTAG	6 cut(s)	108, 114, 141, 252, 525, 673
GluI	GCNGC	4 cut(s)	121, 318, 616, 646
HaeIII	GGCC	4 cut(s)	120, 135, 193, 211
HapII	CCGG	3 cut(s)	190, 427, 574
Hin1I	GRCGYC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	185
HpaII	CCGG	3 cut(s)	190, 427, 574
HphI	GGTGA	4 cut(s)	63, 462, 507, 546
Hpy166II	GTNNAC	2 cut(s)	304, 470
Hpy188I	TCNGA	2 cut(s)	409, 630
Hpy188III	TCNNGA	1 cut(s)	495
Hpy8I	GTNNAC	2 cut(s)	304, 470
Hpy99I	CGWCG	2 cut(s)	99, 102
HpyAV	CCTTC	3 cut(s)	78, 409, 525
HpyCH4III	ACNGT	2 cut(s)	59, 373
HpyCH4IV	ACGT	3 cut(s)	97, 205, 277
HpyCH4V	TGCA	2 cut(s)	26, 320
HpyF10VI	GCNNNNNNNGC	9 cut(s)	117, 177, 186, 217, 317, 323, 453, 645, 654
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	3 cut(s)	97, 205, 277
Hsp92I	GRCGYC	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	185
KpnI	GGTACC	1 cut(s)	574
KroI	GCCGGC	1 cut(s)	189
KroNI	GCCGGC	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	145, 271, 581
LmnI	GCTCC	5 cut(s)	453, 577, 612, 630, 642
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	304, 313
MaeI	CTAG	6 cut(s)	108, 114, 141, 252, 525, 673
MaeII	ACGT	3 cut(s)	97, 205, 277
MaeIII	GTNAC	2 cut(s)	59, 83
MalI	GATC	3 cut(s)	147, 273, 583
MboI	GATC	3 cut(s)	145, 271, 581
MboII	GAAGA	6 cut(s)	48, 140, 167, 209, 344, 409
MflI	RGATCY	2 cut(s)	145, 271
MluCI	AATT	3 cut(s)	221, 348, 365
MmeI	TCCRAC	1 cut(s)	608
MroNI	GCCGGC	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	3 cut(s)	190, 427, 574
MspR9I	CCNGG	4 cut(s)	428, 504, 575, 659
MvaI	CCWGG	2 cut(s)	504, 659
MwoI	GCNNNNNNNGC	9 cut(s)	117, 177, 186, 217, 317, 323, 453, 645, 654
NaeI	GCCGGC	1 cut(s)	191
NciI	CCSGG	2 cut(s)	428, 575
NdeI	CATATG	2 cut(s)	336, 439
NdeII	GATC	3 cut(s)	145, 271, 581
NgoMIV	GCCGGC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	5 cut(s)	229, 273, 572, 614, 644
NmeAIII	GCCGAG	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	96
PkrI	GCNGC	4 cut(s)	122, 319, 617, 647
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
Ppu21I	YACGTR	2 cut(s)	206, 278
PshAI	GACNNNNGTC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	502, 657
PspCI	CACGTG	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	502, 657
PspN4I	GGNNCC	5 cut(s)	229, 273, 572, 614, 644
PspPI	GGNCC	2 cut(s)	209, 227
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	145, 271
PsyI	GACNNNGTC	1 cut(s)	96
RsaI	GTAC	2 cut(s)	539, 572
RsaNI	GTAC	2 cut(s)	538, 571
RseI	CAYNNNNRTG	1 cut(s)	339
SatI	GCNGC	4 cut(s)	121, 318, 616, 646
Sau3AI	GATC	3 cut(s)	145, 271, 581
Sau96I	GGNCC	2 cut(s)	209, 227
ScrFI	CCNGG	4 cut(s)	428, 504, 575, 659
SfaNI	GCATC	2 cut(s)	304, 313
SfcI	CTRYAG	3 cut(s)	55, 318, 634
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	3 cut(s)	233, 541, 589
SmoI	CTYRAG	3 cut(s)	233, 541, 589
Sse9I	AATT	3 cut(s)	221, 348, 365
SsiI	CCGC	7 cut(s)	74, 121, 361, 451, 535, 616, 646
SspMI	CTAG	6 cut(s)	108, 114, 141, 252, 525, 673
StyD4I	CCNGG	4 cut(s)	426, 502, 573, 657
StyI	CCWWGG	2 cut(s)	251, 524
TaaI	ACNGT	2 cut(s)	59, 373
TaiI	ACGT	3 cut(s)	100, 208, 280
TaqI	TCGA	4 cut(s)	496, 548, 622, 652
TasI	AATT	3 cut(s)	221, 348, 365
TauI	GCSGC	3 cut(s)	123, 618, 648
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	1 cut(s)	141
Tth111I	GACNNNGTC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	523
XapI	RAATTY	1 cut(s)	348
XcmI	CCANNNNNNNNNTGG	2 cut(s)	160, 334
XmaJI	CCTAGG	2 cut(s)	251, 524
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	6 cut(s)	108, 114, 141, 252, 525, 673
ZraI	GACGTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.