Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Reverse (-)

12038203 .. 12040653

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G085400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGGGGTAGGAGTTACAGTTACAGCCCTTCACCGCCTAGGGATTACAGCAGACGACGTCGTAGCCCTAGCCCTAGAGGTCGCTATGGAGGTCGTGGTAGGGATCTTCCCACCAGTCTCTTGGTTCGCAATCTTCGCCATAACTGCAGGCCAGAGGATTTACGTGGGCCATTTGGGCAATTTGGCCCCCTCAAGGACATCTACTTGCCCAGGGATTATTATACTGGGGAGCCACGTGGCTTTGGATTTGTTCAGTTTGTAGACCCTGCTGATGCTGCAGATGCCAAATACCATATGGATGGGCAAATTCTCCTTGGACGGGAAGTAACAGTTGTGTTTGCTGAGGAAAACAGAAAGAAGCCATCAGAAATGAGGGCAAGAGATCGTGTTAGGGGTCGGTCATATGATAGAAGACGGTCTTCCTCTCGTTATTCTCGTTCACCGCGATATGCTCGAACCTACTCTCGAAGTCCTGATTACTATTCACCTTCTCCTAGGCGGAGGCGGTACTCAAGGTCAATTTCACCTAGGGACAGAAGGTACCGGGAGCAATCACGCTCAAGATCTCCCTATGGTTCAAGGAGCCGTAGCCGAAGCTTTAGTAGGAGCCGGAGTCATAGCTTGGACTACTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

213

Amino Acids

25.13

Weight (kDa)

11.3

Isoelectric Point (pI)

109.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	61
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	1 cut(s)	445
AciI	CCGC	4 cut(s)	35, 443, 499, 505
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	306
AcvI	CACGTG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	2 cut(s)	509, 542
AfiI	CCNNNNNNNGG	2 cut(s)	193, 319
AgsI	TTSAA	1 cut(s)	579
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	2 cut(s)	597, 621
AluI	AGCT	2 cut(s)	597, 621
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	3 cut(s)	149, 167, 184
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	306
Asp718I	GGTACC	1 cut(s)	540
AspA2I	CCTAGG	3 cut(s)	38, 494, 527
AspS9I	GGNCC	2 cut(s)	167, 185
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	4 cut(s)	24, 432, 477, 516
AvrII	CCTAGG	3 cut(s)	38, 494, 527
BanI	GGYRCC	1 cut(s)	540
BbrPI	CACGTG	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	411, 418
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	293, 370
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	5 cut(s)	39, 69, 75, 495, 528
BfmI	CTRYAG	2 cut(s)	145, 276
BglI	GCCNNNNNGGC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	563
BisI	GCNGC	1 cut(s)	276
BlnI	CCTAGG	3 cut(s)	38, 494, 527
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	211, 545
BmgT120I	GGNCC	2 cut(s)	167, 185
BmiI	GGNNCC	5 cut(s)	187, 231, 542, 584, 608
BmrFI	CCNGG	2 cut(s)	211, 545
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	262, 271
BmuI	ACTGGG	1 cut(s)	234
BpiI	GAAGAC	2 cut(s)	411, 418
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	3 cut(s)	176, 496, 544
BpuMI	CCSGG	1 cut(s)	545
BsaAI	YACGTR	2 cut(s)	164, 236
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	6 cut(s)	38, 209, 210, 313, 494, 527
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 598, 628
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 319
Bse1I	ACTGG	2 cut(s)	114, 229
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	6 cut(s)	38, 209, 210, 313, 494, 527
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	193, 319
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	114, 229
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	445
BshFI	GGCC	3 cut(s)	151, 169, 186
BshNI	GGYRCC	1 cut(s)	540
BsiSI	CCGG	2 cut(s)	544, 610
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	193, 319
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	3 cut(s)	151, 169, 186
Bsp143I	GATC	3 cut(s)	103, 382, 563
BspACI	CCGC	4 cut(s)	35, 443, 499, 505
BspANI	GGCC	3 cut(s)	151, 169, 186
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	5 cut(s)	187, 231, 542, 584, 608
BspMAI	CTGCAG	2 cut(s)	149, 280
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	540
BsrI	ACTGG	2 cut(s)	114, 229
BssECI	CCNNGG	6 cut(s)	38, 209, 210, 313, 494, 527
BssMI	GATC	3 cut(s)	103, 382, 563
BssNI	GRCGYC	1 cut(s)	58
BssT1I	CCWWGG	4 cut(s)	38, 313, 494, 527
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	20, 331, 417
BstACI	GRCGYC	1 cut(s)	58
BstBAI	YACGTR	2 cut(s)	164, 236
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	342, 633
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	445
BstKTI	GATC	3 cut(s)	106, 385, 566
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	3 cut(s)	103, 382, 563
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 144, 175, 275, 281
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	209, 543
BstSFI	CTRYAG	2 cut(s)	145, 276
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	2 cut(s)	411, 418
BstX2I	RGATCY	2 cut(s)	103, 563
BstXI	CCANNNNNNTGG	2 cut(s)	121, 299
BstYI	RGATCY	2 cut(s)	103, 563
BsuRI	GGCC	3 cut(s)	151, 169, 186
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	167, 185
Csp6I	GTAC	2 cut(s)	508, 541
CviQI	GTAC	2 cut(s)	508, 541
DdeI	CTNAG	2 cut(s)	342, 633
DpnI	GATC	3 cut(s)	105, 384, 565
DpnII	GATC	3 cut(s)	103, 382, 563
EciI	GGCGGA	1 cut(s)	514
Eco130I	CCWWGG	4 cut(s)	38, 313, 494, 527
Eco72I	CACGTG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	4 cut(s)	38, 313, 494, 527
ErhI	CCWWGG	4 cut(s)	38, 313, 494, 527
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	1 cut(s)	545
FauNDI	CATATG	2 cut(s)	294, 403
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	5 cut(s)	39, 69, 75, 495, 528
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	151, 169, 186
HapII	CCGG	2 cut(s)	544, 610
Hin1I	GRCGYC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	1 cut(s)	613
HpaII	CCGG	2 cut(s)	544, 610
HphI	GGTGA	4 cut(s)	24, 432, 477, 516
Hpy166II	GTNNAC	2 cut(s)	262, 440
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	3 cut(s)	465, 473, 561
Hpy8I	GTNNAC	2 cut(s)	262, 440
Hpy99I	CGWCG	2 cut(s)	60, 63
HpyAV	CCTTC	3 cut(s)	39, 498, 531
HpyCH4III	ACNGT	3 cut(s)	20, 331, 417
HpyCH4IV	ACGT	3 cut(s)	58, 163, 235
HpyCH4V	TGCA	2 cut(s)	147, 278
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 144, 175, 275, 281
HpyF3I	CTNAG	2 cut(s)	342, 633
HpySE526I	ACGT	3 cut(s)	58, 163, 235
Hsp92I	GRCGYC	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	103, 382, 563
LmnI	GCTCC	4 cut(s)	229, 547, 582, 606
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	262, 271
MaeI	CTAG	5 cut(s)	39, 69, 75, 495, 528
MaeII	ACGT	3 cut(s)	58, 163, 235
MaeIII	GTNAC	3 cut(s)	14, 20, 325
MalI	GATC	3 cut(s)	105, 384, 565
MboI	GATC	3 cut(s)	103, 382, 563
MboII	GAAGA	4 cut(s)	98, 125, 411, 423
MflI	RGATCY	2 cut(s)	103, 563
MluCI	AATT	3 cut(s)	179, 306, 519
MlyI	GAGTC	1 cut(s)	622
MnlI	CCTC	8 cut(s)	71, 83, 148, 200, 337, 366, 433, 495
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	2 cut(s)	544, 610
MspR9I	CCNGG	2 cut(s)	211, 545
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	5 cut(s)	135, 144, 175, 275, 281
NciI	CCSGG	1 cut(s)	545
NdeI	CATATG	2 cut(s)	294, 403
NdeII	GATC	3 cut(s)	103, 382, 563
NlaIV	GGNNCC	5 cut(s)	187, 231, 542, 584, 608
PasI	CCCWGGG	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	2 cut(s)	433, 442
PflFI	GACNNNGTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	621
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	621
Ppu21I	YACGTR	2 cut(s)	164, 236
Psp6I	CCWGG	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	5 cut(s)	187, 231, 542, 584, 608
PspPI	GGNCC	2 cut(s)	167, 185
PstI	CTGCAG	2 cut(s)	149, 280
PsuI	RGATCY	2 cut(s)	103, 563
PsyI	GACNNNGTC	1 cut(s)	57
RsaI	GTAC	2 cut(s)	509, 542
RsaNI	GTAC	2 cut(s)	508, 541
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	3 cut(s)	103, 382, 563
Sau96I	GGNCC	2 cut(s)	167, 185
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	2 cut(s)	211, 545
SfaNI	GCATC	2 cut(s)	262, 271
SfcI	CTRYAG	2 cut(s)	145, 276
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	3 cut(s)	191, 511, 559
SmoI	CTYRAG	3 cut(s)	191, 511, 559
Sse9I	AATT	3 cut(s)	179, 306, 519
SsiI	CCGC	4 cut(s)	35, 443, 499, 505
SspMI	CTAG	5 cut(s)	39, 69, 75, 495, 528
StyD4I	CCNGG	2 cut(s)	209, 543
StyI	CCWWGG	4 cut(s)	38, 313, 494, 527
TaaI	ACNGT	3 cut(s)	20, 331, 417
TaiI	ACGT	3 cut(s)	61, 166, 238
TaqI	TCGA	2 cut(s)	454, 466
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	3 cut(s)	179, 306, 519
TseI	GCWGC	1 cut(s)	275
Tth111I	GACNNNGTC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	2 cut(s)	118, 292
XmaJI	CCTAGG	3 cut(s)	38, 494, 527
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	5 cut(s)	39, 69, 75, 495, 528
ZraI	GACGTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.