Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Reverse (-)

25633386 .. 25635919

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGGGGGAGAAGCTACAGTTACAGCCCTTCACCGCCGAGAGGTTACAGCAGACGACGTCGTAGCCCTAGCCCTAGAGGCCGCTATGGAGGAGGCCGTGCTCGGGATCTTCCCACCAGTCTTTTGGTTCGCAATCTTCGCCATGACTGCCGGCCTGAGGATTTACGTGGGCCGTTCGGGCAATTTGGTCCCCTCAAGGACATCTACTTGCCTAGGGATTATTATACTGGATTTGAAGAAACTTGGTTTGAATTCATTGAGAAGAAGTTGGAAGTCTTGAAGAATTTCAACTCAATTTTATCTATGGCACCAACAAGGGTAAAAAACTTGGTGGAGTTTGGATCTTTTATTAATTATCAGGAACACAATGGCTTTGGGGTCGGTCATATGACAGCAGGCGGAGCATTTATTCTCGTTCACCACGCCATGCTCGAACCTACTCTCGAAGTCCAGGTTATTATTCACCCTCCCCTAGGAGAAGGCGGTACTCAAGGTCGATTTCACCAAGAGGTAGGAGGTACCGGGAGCGATCGTACTCAAGGTCTCCCTATGGTTCAAGGAGCCGTAGCCGAAGTCGGAGCTATAGCAGGAGCCGCAGTCGAAGCCTGGACTACTCTCGCTAGTGTACTTGATAGAGTGACTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

215

Amino Acids

23.78

Weight (kDa)

9.33

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	61
Acc65I	GGTACC	1 cut(s)	518
AccB1I	GGYRCC	2 cut(s)	307, 518
AciI	CCGC	5 cut(s)	35, 82, 399, 483, 594
AclWI	GGATC	2 cut(s)	114, 349
AcsI	RAATTY	2 cut(s)	251, 283
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	4 cut(s)	487, 520, 535, 627
AfiI	CCNNNNNNNGG	4 cut(s)	41, 103, 157, 473
AgsI	TTSAA	5 cut(s)	236, 251, 280, 289, 557
AjnI	CCWGG	2 cut(s)	450, 605
AluBI	AGCT	2 cut(s)	15, 581
AluI	AGCT	2 cut(s)	15, 581
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	114, 349
Ama87I	CYCGRG	1 cut(s)	102
AoxI	GGCC	4 cut(s)	79, 94, 152, 170
ApoI	RAATTY	2 cut(s)	251, 283
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	284
Asp718I	GGTACC	1 cut(s)	518
AspA2I	CCTAGG	2 cut(s)	212, 472
AspS9I	GGNCC	2 cut(s)	170, 188
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	4 cut(s)	24, 410, 455, 494
AvaI	CYCGRG	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	188
AvrII	CCTAGG	2 cut(s)	212, 472
AxyI	CCTNAGG	1 cut(s)	156
BanI	GGYRCC	2 cut(s)	307, 518
Bbv12I	GWGCWC	1 cut(s)	103
BceAI	ACGGC	3 cut(s)	81, 157, 548
BciT130I	CCWGG	2 cut(s)	452, 607
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	5 cut(s)	69, 75, 213, 473, 621
BfmI	CTRYAG	2 cut(s)	16, 582
BglI	GCCNNNNNGGC	2 cut(s)	78, 178
BisI	GCNGC	2 cut(s)	82, 594
BlnI	CCTAGG	2 cut(s)	212, 472
BlsI	GCNGC	2 cut(s)	83, 595
Bme1390I	CCNGG	3 cut(s)	452, 523, 607
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	170, 188
BmiI	GGNNCC	5 cut(s)	190, 309, 520, 562, 592
BmrFI	CCNGG	3 cut(s)	452, 523, 607
BpuEI	CTTGAG	3 cut(s)	179, 474, 522
BpuMI	CCSGG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	212, 472
BsaXI	ACNNNNNCTCC	4 cut(s)	517, 547, 582, 612
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 103, 157, 473
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	117, 232
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	452, 607
BseDI	CCNNGG	2 cut(s)	212, 472
BseLI	CCNNNNNNNGG	4 cut(s)	41, 103, 157, 473
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	117, 232
BseRI	GAGGAG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	4 cut(s)	81, 96, 154, 172
BshNI	GGYRCC	2 cut(s)	307, 518
BsiEI	CGRYCG	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	151, 522
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	4 cut(s)	41, 103, 157, 473
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	4 cut(s)	81, 96, 154, 172
Bso31I	GGTCTC	1 cut(s)	548
BsoBI	CYCGRG	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	106, 341, 529
BspACI	CCGC	5 cut(s)	35, 82, 399, 483, 594
BspANI	GGCC	4 cut(s)	81, 96, 154, 172
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	5 cut(s)	190, 309, 520, 562, 592
BspPI	GGATC	2 cut(s)	114, 349
BspT107I	GGYRCC	2 cut(s)	307, 518
BspTNI	GGTCTC	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	117, 232
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	212, 472
BssMI	GATC	3 cut(s)	106, 341, 529
BssNI	GRCGYC	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	212, 472
Bst2UI	CCWGG	2 cut(s)	452, 607
Bst4CI	ACNGT	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	58
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	152, 397
BstDEI	CTNAG	1 cut(s)	156
BstENI	CCTNNNNNAGG	1 cut(s)	471
BstKTI	GATC	3 cut(s)	109, 344, 532
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	3 cut(s)	106, 341, 529
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	7 cut(s)	78, 138, 147, 178, 401, 593, 602
BstNI	CCWGG	2 cut(s)	452, 607
BstSCI	CCNGG	3 cut(s)	450, 521, 605
BstSFI	CTRYAG	2 cut(s)	16, 582
BstX2I	RGATCY	2 cut(s)	106, 341
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	2 cut(s)	106, 341
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	81, 96, 154, 172
Cac8I	GCNNGC	2 cut(s)	152, 397
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	170, 188
Csp6I	GTAC	4 cut(s)	486, 519, 534, 626
CviAII	CATG	2 cut(s)	143, 427
CviQI	GTAC	4 cut(s)	486, 519, 534, 626
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	108, 343, 531
DpnII	GATC	3 cut(s)	106, 341, 529
EciI	GGCGGA	1 cut(s)	414
Eco130I	CCWWGG	2 cut(s)	212, 472
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	471
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	450, 605
EcoT14I	CCWWGG	2 cut(s)	212, 472
ErhI	CCWWGG	2 cut(s)	212, 472
FaeI	CATG	2 cut(s)	146, 430
FaiI	YATR	9 cut(s)	87, 144, 225, 305, 387, 389, 428, 551, 584
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	2 cut(s)	142, 426
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	82, 594
Fsp4HI	GCNGC	2 cut(s)	82, 594
FspBI	CTAG	5 cut(s)	69, 75, 213, 473, 621
GluI	GCNGC	2 cut(s)	82, 594
HaeIII	GGCC	4 cut(s)	81, 96, 154, 172
HapII	CCGG	2 cut(s)	151, 522
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	146, 430
HpaII	CCGG	2 cut(s)	151, 522
HphI	GGTGA	4 cut(s)	24, 410, 455, 494
Hpy166II	GTNNAC	2 cut(s)	418, 626
Hpy188I	TCNGA	1 cut(s)	578
Hpy188III	TCNNGA	5 cut(s)	104, 277, 359, 443, 645
Hpy8I	GTNNAC	2 cut(s)	418, 626
Hpy99I	CGWCG	2 cut(s)	60, 63
HpyAV	CCTTC	2 cut(s)	39, 473
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	2 cut(s)	58, 166
HpyF10VI	GCNNNNNNNGC	7 cut(s)	78, 138, 147, 178, 401, 593, 602
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	2 cut(s)	58, 166
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	146, 430
KpnI	GGTACC	1 cut(s)	522
KroI	GCCGGC	1 cut(s)	150
KroNI	GCCGGC	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	106, 341, 529
LmnI	GCTCC	5 cut(s)	401, 525, 560, 578, 590
MaeI	CTAG	5 cut(s)	69, 75, 213, 473, 621
MaeII	ACGT	2 cut(s)	58, 166
MaeIII	GTNAC	3 cut(s)	20, 44, 637
MalI	GATC	3 cut(s)	108, 343, 531
MboI	GATC	3 cut(s)	106, 341, 529
MboII	GAAGA	5 cut(s)	101, 128, 248, 274, 292
MflI	RGATCY	2 cut(s)	106, 341
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	5 cut(s)	182, 251, 283, 294, 352
MmeI	TCCRAC	2 cut(s)	249, 556
MnlI	CCTC	9 cut(s)	35, 71, 83, 86, 151, 203, 477, 502, 509
MroNI	GCCGGC	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	351
MspI	CCGG	2 cut(s)	151, 522
MspR9I	CCNGG	3 cut(s)	452, 523, 607
MvaI	CCWGG	2 cut(s)	452, 607
MwoI	GCNNNNNNNGC	7 cut(s)	78, 138, 147, 178, 401, 593, 602
NaeI	GCCGGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	523
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	3 cut(s)	106, 341, 529
NgoMIV	GCCGGC	1 cut(s)	150
NlaIII	CATG	2 cut(s)	146, 430
NlaIV	GGNNCC	5 cut(s)	190, 309, 520, 562, 592
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	637
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PdiI	GCCGGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	284
PflFI	GACNNNGTC	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	83, 595
Ple19I	CGATCG	1 cut(s)	532
Ppu21I	YACGTR	1 cut(s)	167
PshBI	ATTAAT	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	450, 605
PspGI	CCWGG	2 cut(s)	450, 605
PspN4I	GGNNCC	5 cut(s)	190, 309, 520, 562, 592
PspPI	GGNCC	2 cut(s)	170, 188
PsuI	RGATCY	2 cut(s)	106, 341
PsyI	GACNNNGTC	1 cut(s)	57
PvuI	CGATCG	1 cut(s)	532
RsaI	GTAC	4 cut(s)	487, 520, 535, 627
RsaNI	GTAC	4 cut(s)	486, 519, 534, 626
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	82, 594
Sau3AI	GATC	3 cut(s)	106, 341, 529
Sau96I	GGNCC	2 cut(s)	170, 188
ScrFI	CCNGG	3 cut(s)	452, 523, 607
SduI	GDGCHC	1 cut(s)	103
SfcI	CTRYAG	2 cut(s)	16, 582
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	3 cut(s)	194, 489, 537
SmoI	CTYRAG	3 cut(s)	194, 489, 537
Sse9I	AATT	5 cut(s)	182, 251, 283, 294, 352
SsiI	CCGC	5 cut(s)	35, 82, 399, 483, 594
SspMI	CTAG	5 cut(s)	69, 75, 213, 473, 621
StyD4I	CCNGG	3 cut(s)	450, 521, 605
StyI	CCWWGG	2 cut(s)	212, 472
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	2 cut(s)	61, 169
TaqI	TCGA	4 cut(s)	432, 444, 496, 600
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	5 cut(s)	182, 251, 283, 294, 352
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	2 cut(s)	84, 596
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	637
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	1 cut(s)	244
Tth111I	GACNNNGTC	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	351
XagI	CCTNNNNNAGG	1 cut(s)	471
XapI	RAATTY	2 cut(s)	251, 283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmaJI	CCTAGG	2 cut(s)	212, 472
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	5 cut(s)	69, 75, 213, 473, 621
ZraI	GACGTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.