RLG00000037013

splicing factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
87541546 .. 87547417
5872 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037013

Sequence Viewer

Length: 1032 bp
ATGTTGCCCGTCCGACAGCATCCCCACGACGTCAAGGCGACGCCAGAAAGCTACCGGACGAGATGTGGTGGTGCCTTGCCGCCGCAACCCTTGTGTCCTCGAGAGAGAGAGAGTTTTAGACTTCTTAGGGTTTTAGACTTCTTAAGCTGCTATCTTCGTCGCATTCGCACCCAAGCCAAAGCAACCACCGCCGTCGATTTCAGGTCACTAACGCCGGCCGCCGATTCACCGCCTTCAGAGGGCAGCCCACAGTTAACTACAGATGAGGGGAAGGAGTTACAGTCCATCACCACCACCAAGGGGATATGCCTCCTAGTTCGTAACCTTCGCCATGATTGCAGGCCAGATGATCTTCGCCGTCCATTTGGGCAGTTTGGTCCTCTGAAGGACATTTACCTGCCAAAGGATTATTATTCAGGGCAACCTCGTGGTTTCGGTTTTGTCCAATTTGTTGATCCTACTGATGCTGCGGAGGCTAAATATCAAATGGATGGTCACGTTCTTCTTGGTCGCGAGGTAACTGTTGTATTTGCAGAGGAGAACAGGAAGAAGCCGTCTGATATGAGGCAAAGGGAGGGTCCAAGCTCCAGGGGTAGTGGTCGACATCGTGATCGAAGAGGGTCTCCTCCACGCTATTCACGCTCTCCACGATATTCCCGATCTCCACCTCCACGTCATGCAAGATCTCGGCCCCGCAGCCCTTCTTATGATTCCCCTCCCCCAAAAAGAAGGGAGTACTCGAGATCTGTCTCACCCCCAGGGAGAAGGTACAGTAGAGAGAGATCGTTTTCCCGATCTCCTCCTCAACCATATAATGGCTCAAGGGGCCGCAGTCAGAGTCCAGGTAGGGGTCCAAGCCGGAGCAGAAGCCAGGGTCTAAGGCAAATTGGTAGAAGCTTGAGTCCCAGGCCACAAAGTCCTGATCATGAAGATTACTCAAGGGAACCAAATGGAGACAGAAGCGTATTGAGCTTAAAGGAAGTGACTTTCTGGCTGGGGAAGTTGAATCGGATCAGGAGTCACGAGCTATAG

Protein Analysis

344

Amino Acids

39.14

Weight (kDa)

10.75

Isoelectric Point (pI)

87.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 104 - 173 2.1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 815
AccI GTMKAC 1 cut(s) 601
AccII CGCG 1 cut(s) 513
AciI CCGC 8 cut(s) 80, 83, 189, 219, 230, 470, 694, 829
AclWI GGATC 2 cut(s) 449, 1019
AcoI YGGCCR 1 cut(s) 216
AcuI CTGAAG 2 cut(s) 219, 404
AcyI GRCGYC 2 cut(s) 30, 41
AfaI GTAC 2 cut(s) 737, 770
AfiI CCNNNNNNNGG 5 cut(s) 239, 300, 403, 815, 848
AflII CTTAAG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 1006
AjiI CACGTC 1 cut(s) 674
AjnI CCWGG 5 cut(s) 587, 757, 841, 870, 905
AluBI AGCT 6 cut(s) 51, 147, 585, 897, 972, 1027
AluI AGCT 6 cut(s) 51, 147, 585, 897, 972, 1027
Alw26I GTCTC 3 cut(s) 627, 754, 948
AlwI GGATC 2 cut(s) 449, 1019
Ama87I CYCGRG 2 cut(s) 99, 739
AoxI GGCC 5 cut(s) 216, 341, 689, 826, 908
ApeKI GCWGC 4 cut(s) 147, 243, 467, 696
ArsI GACNNNNNNTTYG 4 cut(s) 478, 510, 562, 594
AspS9I GGNCC 5 cut(s) 377, 578, 690, 826, 851
AsuHPI GGTGA 3 cut(s) 219, 280, 744
AvaI CYCGRG 2 cut(s) 99, 739
AvaII GGWCC 3 cut(s) 377, 578, 851
BanI GGYRCC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BauI CACGAG 2 cut(s) 426, 1022
BbvI GCAGC 4 cut(s) 134, 255, 454, 708
BccI CCATC 2 cut(s) 293, 485
BceAI ACGGC 3 cut(s) 176, 342, 538
BciT130I CCWGG 5 cut(s) 589, 759, 843, 872, 907
BclI TGATCA 1 cut(s) 922
BcoDI GTCTC 3 cut(s) 627, 754, 948
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 2 cut(s) 258, 1028
BfrI CTTAAG 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 405
BglII AGATCT 2 cut(s) 683, 743
BisI GCNGC 8 cut(s) 80, 83, 148, 219, 244, 468, 697, 829
BlsI GCNGC 8 cut(s) 81, 84, 149, 220, 245, 469, 698, 830
BmcAI AGTACT 1 cut(s) 737
Bme1390I CCNGG 5 cut(s) 589, 759, 843, 872, 907
Bme18I GGWCC 3 cut(s) 377, 578, 851
BmeT110I CYCGRG 2 cut(s) 99, 739
BmgBI CACGTC 1 cut(s) 674
BmgT120I GGNCC 5 cut(s) 377, 578, 690, 826, 851
BmiI GGNNCC 6 cut(s) 73, 579, 692, 827, 852, 945
BmrFI CCNGG 5 cut(s) 589, 759, 843, 872, 907
BmsI GCATC 2 cut(s) 28, 454
BpmI CTGGAG 1 cut(s) 571
BpuEI CTTGAG 3 cut(s) 805, 919, 922
BsaHI GRCGYC 2 cut(s) 30, 41
BsaI GGTCTC 1 cut(s) 627
BsaJI CCNNGG 6 cut(s) 297, 588, 757, 758, 871, 905
BsaWI WCCGGW 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 5 cut(s) 239, 300, 403, 815, 848
Bse118I RCCGGY 1 cut(s) 214
BseBI CCWGG 5 cut(s) 589, 759, 843, 872, 907
BseDI CCNNGG 6 cut(s) 297, 588, 757, 758, 871, 905
BseGI GGATG 2 cut(s) 19, 496
BseLI CCNNNNNNNGG 5 cut(s) 239, 300, 403, 815, 848
BseRI GAGGAG 4 cut(s) 551, 615, 789, 792
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 4 cut(s) 134, 255, 454, 708
BseYI CCCAGC 1 cut(s) 994
Bsh1236I CGCG 1 cut(s) 513
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 5 cut(s) 218, 343, 691, 828, 910
BshNI GGYRCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 219
BsiHKCI CYCGRG 2 cut(s) 99, 739
BsiSI CCGG 3 cut(s) 55, 215, 859
BslFI GGGAC 1 cut(s) 888
BslI CCNNNNNNNGG 5 cut(s) 239, 300, 403, 815, 848
BsmAI GTCTC 3 cut(s) 627, 754, 948
BsmFI GGGAC 1 cut(s) 888
BsmI GAATGC 1 cut(s) 162
BsnI GGCC 5 cut(s) 218, 343, 691, 828, 910
Bso31I GGTCTC 1 cut(s) 627
BsoBI CYCGRG 2 cut(s) 99, 739
Bsp68I TCGCGA 1 cut(s) 513
BspACI CCGC 8 cut(s) 80, 83, 189, 219, 230, 470, 694, 829
BspANI GGCC 5 cut(s) 218, 343, 691, 828, 910
BspFNI CGCG 1 cut(s) 513
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 6 cut(s) 73, 579, 692, 827, 852, 945
BspMI ACCTGC 1 cut(s) 405
BspPI GGATC 2 cut(s) 449, 1019
BspT107I GGYRCC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 627
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 6 cut(s) 297, 588, 757, 758, 871, 905
BssNI GRCGYC 2 cut(s) 30, 41
BssSI CACGAG 2 cut(s) 426, 1022
BssT1I CCWWGG 1 cut(s) 297
Bst2BI CACGAG 2 cut(s) 426, 1022
Bst2UI CCWGG 5 cut(s) 589, 759, 843, 872, 907
Bst4CI ACNGT 4 cut(s) 252, 282, 523, 773
Bst6I CTCTTC 1 cut(s) 610
BstACI GRCGYC 2 cut(s) 30, 41
BstAFI CTTAAG 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 216, 341
BstDEI CTNAG 2 cut(s) 125, 878
BstENI CCTNNNNNAGG 1 cut(s) 401
BstF5I GGATG 2 cut(s) 19, 496
BstFNI CGCG 1 cut(s) 513
BstMAI GTCTC 3 cut(s) 627, 754, 948
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 6 cut(s) 188, 336, 473, 639, 825, 969
BstNI CCWGG 5 cut(s) 589, 759, 843, 872, 907
BstSCI CCNGG 5 cut(s) 587, 757, 841, 870, 905
BstSFI CTRYAG 2 cut(s) 258, 1028
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 4 cut(s) 134, 255, 454, 708
BstX2I RGATCY 2 cut(s) 683, 743
BstYI RGATCY 2 cut(s) 683, 743
BstZI CGGCCG 1 cut(s) 216
BsuRI GGCC 5 cut(s) 218, 343, 691, 828, 910
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 2 cut(s) 19, 496
BtuMI TCGCGA 1 cut(s) 513
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 216, 341
CciI TCATGA 1 cut(s) 925
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 5 cut(s) 377, 578, 690, 826, 851
CseI GACGC 1 cut(s) 49
Csp6I GTAC 2 cut(s) 736, 769
CviAII CATG 3 cut(s) 332, 677, 926
CviQI GTAC 2 cut(s) 736, 769
DdeI CTNAG 2 cut(s) 125, 878
EaeI YGGCCR 1 cut(s) 216
EagI CGGCCG 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
EclXI CGGCCG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 627
Eco47I GGWCC 3 cut(s) 377, 578, 851
Eco52I CGGCCG 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 219, 404
Eco88I CYCGRG 2 cut(s) 99, 739
EcoNI CCTNNNNNAGG 1 cut(s) 401
EcoRII CCWGG 5 cut(s) 587, 757, 841, 870, 905
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 3 cut(s) 335, 680, 929
FaiI YATR 9 cut(s) 307, 333, 563, 678, 708, 811, 813, 927, 1030
FaqI GGGAC 1 cut(s) 888
FatI CATG 3 cut(s) 331, 676, 925
FauI CCCGC 1 cut(s) 701
FbaI TGATCA 1 cut(s) 922
FblI GTMKAC 1 cut(s) 601
Fnu4HI GCNGC 8 cut(s) 80, 83, 148, 219, 244, 468, 697, 829
FokI GGATG 2 cut(s) 6, 503
Fsp4HI GCNGC 8 cut(s) 80, 83, 148, 219, 244, 468, 697, 829
FspBI CTAG 1 cut(s) 314
GluI GCNGC 8 cut(s) 80, 83, 148, 219, 244, 468, 697, 829
GsaI CCCAGC 1 cut(s) 998
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 5 cut(s) 218, 343, 691, 828, 910
HapII CCGG 3 cut(s) 55, 215, 859
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 2 cut(s) 30, 41
Hin1II CATG 3 cut(s) 335, 680, 929
HincII GTYRAC 2 cut(s) 255, 602
HindII GTYRAC 2 cut(s) 255, 602
HindIII AAGCTT 1 cut(s) 895
HinfI GANTC 6 cut(s) 224, 710, 838, 901, 1006, 1018
HpaI GTTAAC 1 cut(s) 255
HpaII CCGG 3 cut(s) 55, 215, 859
HphI GGTGA 3 cut(s) 219, 280, 744
Hpy166II GTNNAC 2 cut(s) 255, 602
Hpy188I TCNGA 6 cut(s) 14, 238, 384, 559, 837, 1011
Hpy8I GTNNAC 2 cut(s) 255, 602
Hpy99I CGWCG 4 cut(s) 32, 43, 162, 197
HpyAV CCTTC 7 cut(s) 243, 265, 335, 379, 711, 723, 759
HpyCH4III ACNGT 4 cut(s) 252, 282, 523, 773
HpyCH4IV ACGT 3 cut(s) 30, 498, 673
HpyCH4V TGCA 3 cut(s) 339, 533, 680
HpyF10VI GCNNNNNNNGC 6 cut(s) 188, 336, 473, 639, 825, 969
HpyF3I CTNAG 2 cut(s) 125, 878
HpySE526I ACGT 3 cut(s) 30, 498, 673
Hsp92I GRCGYC 2 cut(s) 30, 41
Hsp92II CATG 3 cut(s) 335, 680, 929
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 922
KspAI GTTAAC 1 cut(s) 255
LmnI GCTCC 2 cut(s) 590, 861
Lsp1109I GCAGC 4 cut(s) 134, 255, 454, 708
LweI GCATC 2 cut(s) 28, 454
MaeI CTAG 1 cut(s) 314
MaeII ACGT 3 cut(s) 30, 498, 673
MaeIII GTNAC 7 cut(s) 204, 276, 320, 494, 517, 982, 1019
MboII GAAGA 6 cut(s) 146, 344, 494, 559, 627, 941
MflI RGATCY 2 cut(s) 683, 743
MluCI AATT 2 cut(s) 446, 885
MlyI GAGTC 3 cut(s) 847, 910, 1027
MmeI TCCRAC 1 cut(s) 37
MroNI GCCGGC 1 cut(s) 214
MseI TTAA 3 cut(s) 143, 254, 974
MspCI CTTAAG 1 cut(s) 142
MspI CCGG 3 cut(s) 55, 215, 859
MspR9I CCNGG 5 cut(s) 589, 759, 843, 872, 907
Mva1269I GAATGC 1 cut(s) 162
MvaI CCWGG 5 cut(s) 589, 759, 843, 872, 907
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 6 cut(s) 188, 336, 473, 639, 825, 969
NaeI GCCGGC 1 cut(s) 216
NgoMIV GCCGGC 1 cut(s) 214
NlaIII CATG 3 cut(s) 335, 680, 929
NlaIV GGNNCC 6 cut(s) 73, 579, 692, 827, 852, 945
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 4 cut(s) 204, 494, 982, 1019
NruI TCGCGA 1 cut(s) 513
PaeR7I CTCGAG 2 cut(s) 99, 739
PagI TCATGA 1 cut(s) 925
PasI CCCWGGG 1 cut(s) 758
PcsI WCGNNNNNNNCGW 2 cut(s) 646, 655
PctI GAATGC 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 216
PfeI GAWTC 3 cut(s) 224, 710, 1006
PflMI CCANNNNNTGG 1 cut(s) 815
PkrI GCNGC 8 cut(s) 81, 84, 149, 220, 245, 469, 698, 830
PleI GAGTC 3 cut(s) 846, 909, 1026
PpsI GAGTC 3 cut(s) 846, 909, 1026
Psp6I CCWGG 5 cut(s) 587, 757, 841, 870, 905
PspFI CCCAGC 1 cut(s) 994
PspGI CCWGG 5 cut(s) 587, 757, 841, 870, 905
PspN4I GGNNCC 6 cut(s) 73, 579, 692, 827, 852, 945
PspPI GGNCC 5 cut(s) 377, 578, 690, 826, 851
PsuI RGATCY 2 cut(s) 683, 743
RruI TCGCGA 1 cut(s) 513
RsaI GTAC 2 cut(s) 737, 770
RsaNI GTAC 2 cut(s) 736, 769
SalI GTCGAC 1 cut(s) 600
SaqAI TTAA 3 cut(s) 143, 254, 974
SatI GCNGC 8 cut(s) 80, 83, 148, 219, 244, 468, 697, 829
Sau96I GGNCC 5 cut(s) 377, 578, 690, 826, 851
ScaI AGTACT 1 cut(s) 737
SchI GAGTC 3 cut(s) 847, 910, 1027
ScrFI CCNGG 5 cut(s) 589, 759, 843, 872, 907
SfaNI GCATC 2 cut(s) 28, 454
SfcI CTRYAG 2 cut(s) 258, 1028
Sfr274I CTCGAG 2 cut(s) 99, 739
SinI GGWCC 3 cut(s) 377, 578, 851
SlaI CTCGAG 2 cut(s) 99, 739
SmlI CTYRAG 6 cut(s) 99, 142, 739, 820, 898, 937
SmoI CTYRAG 6 cut(s) 99, 142, 739, 820, 898, 937
Sse9I AATT 2 cut(s) 446, 885
SsiI CCGC 8 cut(s) 80, 83, 189, 219, 230, 470, 694, 829
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 5 cut(s) 587, 757, 841, 870, 905
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 4 cut(s) 252, 282, 523, 773
TaiI ACGT 3 cut(s) 33, 501, 676
TaqI TCGA 5 cut(s) 100, 195, 601, 613, 740
TasI AATT 2 cut(s) 446, 885
TatI WGTACW 1 cut(s) 735
TauI GCSGC 4 cut(s) 82, 85, 221, 831
TfiI GAWTC 3 cut(s) 224, 710, 1006
Tru1I TTAA 3 cut(s) 143, 254, 974
Tru9I TTAA 3 cut(s) 143, 254, 974
TseFI GTSAC 4 cut(s) 204, 494, 982, 1019
TseI GCWGC 4 cut(s) 147, 243, 467, 696
Tsp45I GTSAC 4 cut(s) 204, 494, 982, 1019
TspDTI ATGAA 1 cut(s) 942
Van91I CCANNNNNTGG 1 cut(s) 815
Vha464I CTTAAG 1 cut(s) 142
VpaK11BI GGWCC 3 cut(s) 377, 578, 851
XagI CCTNNNNNAGG 1 cut(s) 401
XhoI CTCGAG 2 cut(s) 99, 739
XmiI GTMKAC 1 cut(s) 601
XspI CTAG 1 cut(s) 314
ZraI GACGTC 1 cut(s) 31
ZrmI AGTACT 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.