Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

4833379 .. 4834856

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1050400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGGGGCAGGAGCTATAGTTACAGCCCTTCGCCGCCCAGGGGTTACGGCAGGCGACGCCGTAGCCCTAGCCCGAGATGTCGCTATGGAGGTCGTGGTAGGGATCTTCCCACCAGTCTCTTGGTCCGCAATCTTCGCCATGACTGCAGGCCTGAGGATTTACGCGGGCCATTTGGGCGATTTGGCCCACTTAAGGACGTATACTTGCCTAGGGATTATTATACTGGTGTTGAAGACACCCATGAAGTAATAAGAGTACTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

89

Amino Acids

10.27

Weight (kDa)

10.39

Isoelectric Point (pI)

75.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	165
AciI	CCGC	3 cut(s)	35, 127, 165
AclWI	GGATC	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	41, 193
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	111
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	3 cut(s)	149, 167, 184
AspA2I	CCTAGG	1 cut(s)	209
AspS9I	GGNCC	3 cut(s)	124, 167, 185
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	124
AvrII	CCTAGG	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	240
BceAI	ACGGC	2 cut(s)	45, 64
BciT130I	CCWGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	2 cut(s)	69, 210
BfmI	CTRYAG	2 cut(s)	16, 145
BfrI	CTTAAG	1 cut(s)	191
BglI	GCCNNNNNGGC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	35
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	36
BmcAI	AGTACT	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	124, 167, 185
BmrFI	CCNGG	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	3 cut(s)	38, 39, 209
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 193
Bse1I	ACTGG	2 cut(s)	114, 229
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	3 cut(s)	38, 39, 209
BseLI	CCNNNNNNNGG	2 cut(s)	41, 193
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	114, 229
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	151, 169, 186
BsiHKCI	CYCGRG	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	41, 193
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	151, 169, 186
BsoBI	CYCGRG	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	3 cut(s)	35, 127, 165
BspANI	GGCC	3 cut(s)	151, 169, 186
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	149
BspPI	GGATC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	114, 229
BssECI	CCNNGG	3 cut(s)	38, 39, 209
BssMI	GATC	1 cut(s)	103
BssNAI	GTATAC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	209
Bst1107I	GTATAC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	58
BstAFI	CTTAAG	1 cut(s)	191
BstC8I	GCNNGC	3 cut(s)	53, 149, 167
BstDEI	CTNAG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 135, 144, 175
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	2 cut(s)	16, 145
BstUI	CGCG	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	151, 169, 186
Cac8I	GCNNGC	3 cut(s)	53, 149, 167
Cfr13I	GGNCC	3 cut(s)	124, 167, 185
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	2 cut(s)	140, 242
CviJI	RGCY	7 cut(s)	15, 27, 66, 72, 151, 169, 186
CviKI_1	RGCY	7 cut(s)	15, 27, 66, 72, 151, 169, 186
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	2 cut(s)	143, 245
FaiI	YATR	6 cut(s)	18, 87, 141, 202, 222, 243
FatI	CATG	2 cut(s)	139, 241
FauI	CCCGC	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	69, 210
GluI	GCNGC	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	151, 169, 186
HgaI	GACGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	143, 245
Hpy166II	GTNNAC	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 135, 144, 175
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	143, 245
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	7 cut(s)	25, 37, 52, 127, 133, 165, 210
MaeI	CTAG	2 cut(s)	69, 210
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	20, 44
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	3 cut(s)	98, 125, 245
MflI	RGATCY	1 cut(s)	103
MnlI	CCTC	2 cut(s)	83, 148
MseI	TTAA	1 cut(s)	192
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	57, 135, 144, 175
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	143, 245
PasI	CCCWGGG	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspPI	GGNCC	3 cut(s)	124, 167, 185
PstI	CTGCAG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	3 cut(s)	124, 167, 185
ScaI	AGTACT	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	3 cut(s)	17, 94, 201
SfcI	CTRYAG	2 cut(s)	16, 145
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	3 cut(s)	35, 127, 165
SspMI	CTAG	2 cut(s)	69, 210
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	1 cut(s)	201
TatI	WGTACW	1 cut(s)	256
TauI	GCSGC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	258
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	2 cut(s)	69, 210
ZrmI	AGTACT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.