Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

733930 .. 735162

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1008700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAGGGGACGGAGTTACAGTCCATCACCACCTCCACCACCCCCAAGGGGAGGATATGGTAGGAGGGGACAACGAAGTCCTAGCCCCAGGGGTCGCTATAGCGGTGGTCGCGGTAGTGGTAGAGATCTTCCTACAAGCCTTCTAGTTCGTAACCTTCGCCATGATTGCAGGCCAGAAGATCTCCGCAGGCCATTTGGGCAATTTGGCGTGCTTAAGGACATCTACCTGCCGAAGGATTACTATACTGGTGTACGTATATTTCACCTTATGATTAGAAATTTTATAGTTATCTGCTTGCTTATTTTTCATGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

106

Amino Acids

12.09

Weight (kDa)

11.04

Isoelectric Point (pI)

70.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	75
Acc36I	ACCTGC	1 cut(s)	234
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	102, 111, 184
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	47, 50, 232
AflII	CTTAAG	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	170, 188
ApoI	RAATTY	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	18, 254
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	88
BfaI	CTAG	2 cut(s)	81, 143
BfmI	CTRYAG	1 cut(s)	97
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	196
BglII	AGATCT	2 cut(s)	124, 178
Bme1390I	CCNGG	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	44, 86, 87
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 50, 232
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	3 cut(s)	44, 86, 87
BseLI	CCNNNNNNNGG	3 cut(s)	47, 50, 232
BseNI	ACTGG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	172, 190
BslFI	GGGAC	2 cut(s)	21, 81
BslI	CCNNNNNNNGG	3 cut(s)	47, 50, 232
BsmFI	GGGAC	2 cut(s)	21, 81
BsnI	GGCC	2 cut(s)	172, 190
Bsp143I	GATC	2 cut(s)	124, 178
BspACI	CCGC	3 cut(s)	102, 111, 184
BspANI	GGCC	2 cut(s)	172, 190
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	234
BspTI	CTTAAG	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	44, 86, 87
BssMI	GATC	2 cut(s)	124, 178
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	170, 188, 209, 296
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	127, 181
BstMBI	GATC	2 cut(s)	124, 178
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 165, 196
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	97
BstSNI	TACGTA	1 cut(s)	254
BstUI	CGCG	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	124, 178
BstYI	RGATCY	2 cut(s)	124, 178
BsuRI	GGCC	2 cut(s)	172, 190
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	4 cut(s)	170, 188, 209, 296
CciI	TCATGA	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	2 cut(s)	161, 308
CviJI	RGCY	4 cut(s)	84, 138, 172, 190
CviKI_1	RGCY	4 cut(s)	84, 138, 172, 190
CviQI	GTAC	1 cut(s)	251
DpnI	GATC	2 cut(s)	126, 180
DpnII	GATC	2 cut(s)	124, 178
DrdI	GACNNNNNNGTC	1 cut(s)	75
DseDI	GACNNNNNNGTC	1 cut(s)	75
Eco105I	TACGTA	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	2 cut(s)	164, 311
FaiI	YATR	8 cut(s)	57, 99, 162, 243, 257, 269, 284, 309
FaqI	GGGAC	2 cut(s)	21, 81
FatI	CATG	2 cut(s)	160, 307
FspBI	CTAG	2 cut(s)	81, 143
HaeIII	GGCC	2 cut(s)	172, 190
Hin1II	CATG	2 cut(s)	164, 311
HphI	GGTGA	2 cut(s)	18, 254
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	149, 164, 226
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 165, 196
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	164, 311
Kzo9I	GATC	2 cut(s)	124, 178
LpnPI	CCDG	7 cut(s)	73, 100, 154, 172, 186, 231, 239
MaeI	CTAG	2 cut(s)	81, 143
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	2 cut(s)	14, 149
MalI	GATC	2 cut(s)	126, 180
MboI	GATC	2 cut(s)	124, 178
MboII	GAAGA	2 cut(s)	119, 188
MflI	RGATCY	2 cut(s)	124, 178
MluCI	AATT	2 cut(s)	200, 277
MnlI	CCTC	3 cut(s)	42, 44, 57
MseI	TTAA	1 cut(s)	213
MspCI	CTTAAG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	108, 165, 196
NdeII	GATC	2 cut(s)	124, 178
NlaIII	CATG	2 cut(s)	164, 311
PagI	TCATGA	1 cut(s)	307
PasI	CCCWGGG	1 cut(s)	87
Ppu21I	YACGTR	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	124, 178
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	124, 178
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	5 cut(s)	34, 156, 228, 256, 267
SfcI	CTRYAG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SnaBI	TACGTA	1 cut(s)	254
Sse9I	AATT	2 cut(s)	200, 277
SsiI	CCGC	3 cut(s)	102, 111, 184
SspMI	CTAG	2 cut(s)	81, 143
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	256
TasI	AATT	2 cut(s)	200, 277
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	2 cut(s)	81, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.