Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

521009 .. 525600

Gene Structure 4592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G005600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGGGGAAGAAGCTACAGCCCATCGCCACCAAGGGGGGGATATGGTAGGAGGGGAAGAAGTCCTAGCCCCAGGGGTCGCTATGGTGGTCGTAGCAGAGATCTTCCTACAAGCCTTCTAGTTCGTAACCTTCGCCATGACTGCAGGCCAGAAGATCTCCGCAAGCCATTTGGGCAGTTTGGCACTCTTAAGGATGTTTACCTGCCAAAGGATTACTATACTGGGGAACCTCGTGGTTTTGGTTTTGTCCAATTTGTTGAACCTGCTGATGCTGAAGAGGCTAAATATCAGATGGATGGTCAGCTTCTTCAAGGCCGAGAGGTTACTGTTGTATTTGCAGAGGAGAACAGGAAGAAGCCATCTGATATGAGGCATAGGGAGCGTGCAAGCACCAGGAGTGGTCGATATCGTGATCGAAGACGGTCTCCACCTCGATATTCACGCTCTCCACGATATTCCCGATCTCCACCTCCACGCCATACAAGATCTCGGTCCCGCAGCCATGATTATTATTCTCCTCCCCCAAAACGAAGGGATTATTCGAGATCTGTATCACCACCCCAAGAGCGAAGGTACAGTAGAGAGAAGTCGTTTTCTCGATCTCCTCCACCATATAAGGGCTCAAGGAGCCACAGTGAGAGCCCGGATAGGGGTCCAAGCCGAAGCAGGAGCAGAAGCAGAAGTCACAGTCCAAGGCGAATCGACAGACGGACCCGAAGTCCTATTAATGAAGATTACCCAAGGGAACCAAATGGAGACCGATTTCCTAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

259

Amino Acids

30.27

Weight (kDa)

11.26

Isoelectric Point (pI)

109.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	210, 271
AciI	CCGC	2 cut(s)	160, 496
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	6 cut(s)	35, 38, 208, 617, 649, 650
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	260, 311
AhdI	GACNNNNNGTC	1 cut(s)	717
AjnI	CCWGG	2 cut(s)	71, 392
AluBI	AGCT	2 cut(s)	15, 304
AluI	AGCT	2 cut(s)	15, 304
Alw26I	GTCTC	2 cut(s)	429, 750
AoxI	GGCC	2 cut(s)	146, 313
ApeKI	GCWGC	1 cut(s)	498
AseI	ATTAAT	1 cut(s)	726
AspS9I	GGNCC	3 cut(s)	492, 653, 711
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	1 cut(s)	546
AvaII	GGWCC	3 cut(s)	492, 653, 711
BanII	GRGCYC	2 cut(s)	623, 644
BauI	CACGAG	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	4 cut(s)	31, 286, 290, 367
BciT130I	CCWGG	2 cut(s)	73, 394
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	2 cut(s)	429, 750
BfaI	CTAG	3 cut(s)	66, 119, 768
BfmI	CTRYAG	2 cut(s)	16, 142
BfrI	CTTAAG	1 cut(s)	188
BfuAI	ACCTGC	2 cut(s)	210, 271
BglI	GCCNNNNNGGC	1 cut(s)	172
BglII	AGATCT	4 cut(s)	100, 154, 485, 545
BisI	GCNGC	1 cut(s)	499
BlsI	GCNGC	1 cut(s)	500
Bme1390I	CCNGG	3 cut(s)	73, 394, 644
Bme18I	GGWCC	3 cut(s)	492, 653, 711
BmeRI	GACNNNNNGTC	1 cut(s)	717
BmgT120I	GGNCC	3 cut(s)	492, 653, 711
BmiI	GGNNCC	6 cut(s)	228, 494, 629, 654, 713, 747
BmrFI	CCNGG	3 cut(s)	73, 394, 644
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	644
BsaBI	GATNNNNATC	1 cut(s)	550
BsaI	GGTCTC	2 cut(s)	429, 750
BsaJI	CCNNGG	5 cut(s)	32, 71, 72, 692, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	6 cut(s)	35, 38, 208, 617, 649, 650
Bse1I	ACTGG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	73, 394
BseDI	CCNNGG	5 cut(s)	32, 71, 72, 692, 740
BseGI	GGATG	2 cut(s)	199, 301
BseJI	GATNNNNATC	1 cut(s)	550
BseLI	CCNNNNNNNGG	6 cut(s)	35, 38, 208, 617, 649, 650
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	3 cut(s)	356, 507, 594
BseXI	GCAGC	1 cut(s)	510
BshFI	GGCC	2 cut(s)	148, 315
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	6 cut(s)	35, 38, 208, 617, 649, 650
BsmAI	GTCTC	2 cut(s)	429, 750
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	148, 315
Bso31I	GGTCTC	2 cut(s)	429, 750
Bsp1286I	GDGCHC	2 cut(s)	623, 644
Bsp143I	GATC	7 cut(s)	100, 154, 412, 461, 485, 545, 599
BspACI	CCGC	2 cut(s)	160, 496
BspANI	GGCC	2 cut(s)	148, 315
BspLI	GGNNCC	6 cut(s)	228, 494, 629, 654, 713, 747
BspMAI	CTGCAG	1 cut(s)	146
BspMI	ACCTGC	2 cut(s)	210, 271
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	429, 750
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	5 cut(s)	32, 71, 72, 692, 740
BssMI	GATC	7 cut(s)	100, 154, 412, 461, 485, 545, 599
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	3 cut(s)	32, 692, 740
Bst2BI	CACGAG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	73, 394
Bst4CI	ACNGT	5 cut(s)	328, 423, 578, 635, 689
Bst6I	CTCTTC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	188
BstC8I	GCNNGC	4 cut(s)	146, 164, 384, 388
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	199, 301
BstKTI	GATC	7 cut(s)	103, 157, 415, 464, 488, 548, 602
BstMAI	GTCTC	2 cut(s)	429, 750
BstMBI	GATC	7 cut(s)	100, 154, 412, 461, 485, 545, 599
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 172, 278, 379, 627
BstNI	CCWGG	2 cut(s)	73, 394
BstSCI	CCNGG	3 cut(s)	71, 392, 642
BstSFI	CTRYAG	2 cut(s)	16, 142
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	424
BstX2I	RGATCY	4 cut(s)	100, 154, 485, 545
BstYI	RGATCY	4 cut(s)	100, 154, 485, 545
BsuRI	GGCC	2 cut(s)	148, 315
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	199, 301
BtsIMutI	CAGTG	1 cut(s)	640
BveI	ACCTGC	2 cut(s)	210, 271
Cac8I	GCNNGC	4 cut(s)	146, 164, 384, 388
Cfr13I	GGNCC	3 cut(s)	492, 653, 711
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	3 cut(s)	137, 503, 774
CviQI	GTAC	1 cut(s)	574
DpnI	GATC	7 cut(s)	102, 156, 414, 463, 487, 547, 601
DpnII	GATC	7 cut(s)	100, 154, 412, 461, 485, 545, 599
DriI	GACNNNNNGTC	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	270
Eam1105I	GACNNNNNGTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	3 cut(s)	32, 692, 740
Eco24I	GRGCYC	2 cut(s)	623, 644
Eco31I	GGTCTC	2 cut(s)	429, 750
Eco32I	GATATC	1 cut(s)	407
Eco47I	GGWCC	3 cut(s)	492, 653, 711
Eco57I	CTGAAG	1 cut(s)	294
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	71, 392
EcoRV	GATATC	1 cut(s)	407
EcoT14I	CCWWGG	3 cut(s)	32, 692, 740
EcoT38I	GRGCYC	2 cut(s)	623, 644
ErhI	CCWWGG	3 cut(s)	32, 692, 740
FaeI	CATG	3 cut(s)	140, 506, 777
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	3 cut(s)	136, 502, 773
FauI	CCCGC	1 cut(s)	503
Fnu4HI	GCNGC	1 cut(s)	499
FokI	GGATG	2 cut(s)	206, 308
FriOI	GRGCYC	2 cut(s)	623, 644
Fsp4HI	GCNGC	1 cut(s)	499
FspBI	CTAG	3 cut(s)	66, 119, 768
GluI	GCNGC	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	148, 315
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	3 cut(s)	140, 506, 777
HinfI	GANTC	1 cut(s)	699
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	1 cut(s)	546
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	291, 364
Hpy188III	TCNNGA	4 cut(s)	410, 459, 543, 597
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	4 cut(s)	125, 140, 525, 564
HpyCH4III	ACNGT	5 cut(s)	328, 423, 578, 635, 689
HpyCH4V	TGCA	3 cut(s)	144, 338, 386
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 172, 278, 379, 627
Hsp92II	CATG	3 cut(s)	140, 506, 777
Kzo9I	GATC	7 cut(s)	100, 154, 412, 461, 485, 545, 599
LmnI	GCTCC	3 cut(s)	379, 627, 669
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	3 cut(s)	66, 119, 768
MaeIII	GTNAC	3 cut(s)	125, 322, 683
MalI	GATC	7 cut(s)	102, 156, 414, 463, 487, 547, 601
MboI	GATC	7 cut(s)	100, 154, 412, 461, 485, 545, 599
MboII	GAAGA	9 cut(s)	21, 69, 95, 164, 287, 299, 364, 429, 743
MflI	RGATCY	4 cut(s)	100, 154, 485, 545
MhlI	GDGCHC	2 cut(s)	623, 644
MluCI	AATT	1 cut(s)	251
MseI	TTAA	2 cut(s)	189, 726
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	3 cut(s)	73, 394, 644
MvaI	CCWGG	2 cut(s)	73, 394
MwoI	GCNNNNNNNGC	5 cut(s)	141, 172, 278, 379, 627
NciI	CCSGG	1 cut(s)	644
NdeII	GATC	7 cut(s)	100, 154, 412, 461, 485, 545, 599
NlaIII	CATG	3 cut(s)	140, 506, 777
NlaIV	GGNNCC	6 cut(s)	228, 494, 629, 654, 713, 747
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	683
PasI	CCCWGGG	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	2 cut(s)	448, 457
PfeI	GAWTC	1 cut(s)	699
PkrI	GCNGC	1 cut(s)	500
PshBI	ATTAAT	1 cut(s)	726
Psp6I	CCWGG	2 cut(s)	71, 392
PspGI	CCWGG	2 cut(s)	71, 392
PspN4I	GGNNCC	6 cut(s)	228, 494, 629, 654, 713, 747
PspPI	GGNCC	3 cut(s)	492, 653, 711
PstI	CTGCAG	1 cut(s)	146
PsuI	RGATCY	4 cut(s)	100, 154, 485, 545
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SaqAI	TTAA	2 cut(s)	189, 726
SatI	GCNGC	1 cut(s)	499
Sau3AI	GATC	7 cut(s)	100, 154, 412, 461, 485, 545, 599
Sau96I	GGNCC	3 cut(s)	492, 653, 711
ScrFI	CCNGG	3 cut(s)	73, 394, 644
SduI	GDGCHC	2 cut(s)	623, 644
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	2 cut(s)	16, 142
SinI	GGWCC	3 cut(s)	492, 653, 711
SmlI	CTYRAG	2 cut(s)	188, 622
SmoI	CTYRAG	2 cut(s)	188, 622
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	160, 496
SspMI	CTAG	3 cut(s)	66, 119, 768
StyD4I	CCNGG	3 cut(s)	71, 392, 642
StyI	CCWWGG	3 cut(s)	32, 692, 740
TaaI	ACNGT	5 cut(s)	328, 423, 578, 635, 689
TaqI	TCGA	6 cut(s)	403, 415, 433, 542, 598, 702
TaqII	GACCGA	2 cut(s)	480, 774
TasI	AATT	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	699
Tru1I	TTAA	2 cut(s)	189, 726
Tru9I	TTAA	2 cut(s)	189, 726
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	1 cut(s)	498
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	1 cut(s)	744
TspGWI	ACGGA	1 cut(s)	724
TspRI	CASTG	1 cut(s)	640
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	3 cut(s)	492, 653, 711
VspI	ATTAAT	1 cut(s)	726
XagI	CCTNNNNNAGG	1 cut(s)	206
XspI	CTAG	3 cut(s)	66, 119, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.