Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8251633.1

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 706

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8251633.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 230 bp

atgagggggagaagctacagttacagcccttcaccgccgagaggttacagcagacgacgtcgtagccctagccctagaggccgctatggaggaggccgtgctagggatcttcccaccagtcttttggttcgcaatcttcgccatgactgccggcctgaggatttacgtgggccgttcgggcaatttggtcccctcaaggacatctacttgcctagggattattatactgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

77

Amino Acids

8.92

Weight (kDa)

11.06

Isoelectric Point (pI)

89.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	61
AciI	CCGC	2 cut(s)	35, 82
AclWI	GGATC	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	58
AfiI	CCNNNNNNNGG	3 cut(s)	41, 103, 157
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	4 cut(s)	79, 94, 152, 170
AspA2I	CCTAGG	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	170, 188
AsuHPI	GGTGA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	188
AvrII	CCTAGG	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	156
BceAI	ACGGC	2 cut(s)	81, 157
BfaI	CTAG	4 cut(s)	69, 75, 102, 213
BfmI	CTRYAG	1 cut(s)	16
BglI	GCCNNNNNGGC	2 cut(s)	78, 178
BisI	GCNGC	1 cut(s)	82
BlnI	CCTAGG	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	170, 188
BmiI	GGNNCC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 103, 157
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	41, 103, 157
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	105
BshFI	GGCC	4 cut(s)	81, 96, 154, 172
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	3 cut(s)	41, 103, 157
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	4 cut(s)	81, 96, 154, 172
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	35, 82
BspANI	GGCC	4 cut(s)	81, 96, 154, 172
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	58
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 138, 147, 178
BstSFI	CTRYAG	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	106
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	81, 96, 154, 172
Cac8I	GCNNGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	170, 188
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	8 cut(s)	15, 27, 66, 72, 81, 96, 154, 172
CviKI_1	RGCY	8 cut(s)	15, 27, 66, 72, 81, 96, 154, 172
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	146
FaiI	YATR	3 cut(s)	87, 144, 225
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	4 cut(s)	69, 75, 102, 213
GluI	GCNGC	1 cut(s)	82
HaeIII	GGCC	4 cut(s)	81, 96, 154, 172
HapII	CCGG	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	146
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	24
Hpy99I	CGWCG	2 cut(s)	60, 63
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	2 cut(s)	58, 166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 138, 147, 178
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	2 cut(s)	58, 166
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	150
KroNI	GCCGGC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	4 cut(s)	130, 164, 168, 213
MaeI	CTAG	4 cut(s)	69, 75, 102, 213
MaeII	ACGT	2 cut(s)	58, 166
MaeIII	GTNAC	2 cut(s)	20, 44
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	101, 128
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	6 cut(s)	35, 71, 83, 86, 151, 203
MroNI	GCCGGC	1 cut(s)	150
MspI	CCGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	4 cut(s)	78, 138, 147, 178
NaeI	GCCGGC	1 cut(s)	152
NdeII	GATC	1 cut(s)	106
NgoMIV	GCCGGC	1 cut(s)	150
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	63
PdiI	GCCGGC	1 cut(s)	152
PflFI	GACNNNGTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	170, 188
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	170, 188
SetI	ASST	4 cut(s)	17, 46, 61, 169
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	2 cut(s)	35, 82
SspMI	CTAG	4 cut(s)	69, 75, 102, 213
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	2 cut(s)	61, 169
TasI	AATT	1 cut(s)	182
TauI	GCSGC	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmaJI	CCTAGG	1 cut(s)	212
XspI	CTAG	4 cut(s)	69, 75, 102, 213
ZraI	GACGTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.