Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

15064483 .. 15068435

Gene Structure 3953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGGGGGAGAAGCTACAGTTACAGCCCATCACCACCGCCGAGGGGTTACAGCAGACGACGTCGTAGCCCTAGCCCTAAAGGCCGCTACAGAGGAAGCCGCGCTAGGGATCTTCCGACCAGTCTCTTGGTTCGCAATCTTCGCCATGATTGCCGGCCGGAGGACTTACGCAGGCCGTTCGAGCAATTTGGTCCGCTCAAGGATATCTACTTGCCTAGGGATTATTATACTGGGGATCCACGTGGCTTTGGGTTTGTTCAGTTTGTAGACCCTGCTGATGCTGCAGATGCCAAGTATCATATGGATGGGCAGATTCTTCTTGGCCGGGAATTGACAGTTGTATTTGCTGAGGAGAATAGAAAGAAACCTTCGGAGATGAGAGCAAGAGACCGGGGTCGGTCATATGACAGTAGGCGGAGTGGTTATTCTCATTCACCACACTGTTCTCAGACTTGCTCTCGAAGTCCAGATTATTATTCACCCTCCTCTAGGAGAAGGCGGTACTCAAGGTCGATTTCACCAAGAGATAGGAGGTACAGGGAGCCATCATACTCACGGTCTCCCTATGGTTCAAGGTGCCGTAGCCGAAGTCGGAGTTATAGCAGGAGCCGCAGTCGGAGCCTGGACTACTCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

213

Amino Acids

25.03

Weight (kDa)

10.84

Isoelectric Point (pI)

106.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	42 - 111	4.3e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	576
AccBSI	CCGCTC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	102
AciI	CCGC	7 cut(s)	38, 85, 100, 194, 415, 499, 610
AclWI	GGATC	3 cut(s)	117, 230, 243
AcoI	YGGCCR	2 cut(s)	155, 322
AcvI	CACGTG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	2 cut(s)	503, 536
AfiI	CCNNNNNNNGG	4 cut(s)	44, 106, 160, 489
AgsI	TTSAA	1 cut(s)	573
AjnI	CCWGG	1 cut(s)	621
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	3 cut(s)	128, 381, 564
AlwI	GGATC	3 cut(s)	117, 230, 243
AoxI	GGCC	4 cut(s)	82, 155, 173, 322
ApeKI	GCWGC	1 cut(s)	281
AspA2I	CCTAGG	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	2 cut(s)	326, 392
AsuHPI	GGTGA	4 cut(s)	24, 426, 471, 510
AvaII	GGWCC	1 cut(s)	191
AvrII	CCTAGG	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	576
BbrPI	CACGTG	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	37, 299, 553
BceAI	ACGGC	2 cut(s)	160, 564
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	623
BcnI	CCSGG	2 cut(s)	326, 392
BcoDI	GTCTC	3 cut(s)	128, 381, 564
BfaI	CTAG	4 cut(s)	72, 105, 216, 489
BfmI	CTRYAG	3 cut(s)	16, 88, 282
BglI	GCCNNNNNGGC	1 cut(s)	81
BisI	GCNGC	4 cut(s)	85, 100, 282, 610
BlnI	CCTAGG	1 cut(s)	215
BlsI	GCNGC	4 cut(s)	86, 101, 283, 611
Bme1390I	CCNGG	3 cut(s)	326, 392, 623
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	5 cut(s)	237, 543, 578, 608, 620
BmrFI	CCNGG	3 cut(s)	326, 392, 623
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	268, 277
BmuI	ACTGGG	1 cut(s)	240
BoxI	GACNNNNGTC	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	182, 490
BpuMI	CCSGG	2 cut(s)	326, 392
BsaAI	YACGTR	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	61
BsaI	GGTCTC	2 cut(s)	381, 564
BsaJI	CCNNGG	3 cut(s)	41, 215, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 106, 160, 489
Bse118I	RCCGGY	1 cut(s)	153
Bse1I	ACTGG	2 cut(s)	120, 235
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	3 cut(s)	41, 215, 391
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	44, 106, 160, 489
BseMII	CTCAG	2 cut(s)	339, 461
BseNI	ACTGG	2 cut(s)	120, 235
BseRI	GAGGAG	2 cut(s)	365, 475
BseX3I	CGGCCG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	4 cut(s)	84, 157, 175, 324
BshNI	GGYRCC	1 cut(s)	576
BsiEI	CGRYCG	1 cut(s)	158
BsiSI	CCGG	4 cut(s)	154, 158, 325, 391
BslI	CCNNNNNNNGG	4 cut(s)	44, 106, 160, 489
BsmAI	GTCTC	3 cut(s)	128, 381, 564
BsnI	GGCC	4 cut(s)	84, 157, 175, 324
Bso31I	GGTCTC	2 cut(s)	381, 564
Bsp143I	GATC	2 cut(s)	109, 235
BspACI	CCGC	7 cut(s)	38, 85, 100, 194, 415, 499, 610
BspANI	GGCC	4 cut(s)	84, 157, 175, 324
BspCNI	CTCAG	2 cut(s)	340, 460
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	5 cut(s)	237, 543, 578, 608, 620
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	3 cut(s)	117, 230, 243
BspT107I	GGYRCC	1 cut(s)	576
BspTNI	GGTCTC	2 cut(s)	381, 564
BsrBI	CCGCTC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	120, 235
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	3 cut(s)	41, 215, 391
BssMI	GATC	2 cut(s)	109, 235
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	5 cut(s)	20, 337, 410, 443, 558
BstACI	GRCGYC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	155, 173
BstDEI	CTNAG	2 cut(s)	348, 447
BstENI	CCTNNNNNAGG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	112, 238
BstMAI	GTCTC	3 cut(s)	128, 381, 564
BstMBI	GATC	2 cut(s)	109, 235
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	8 cut(s)	81, 141, 150, 181, 281, 287, 609, 618
BstNI	CCWGG	1 cut(s)	623
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	3 cut(s)	324, 390, 621
BstSFI	CTRYAG	3 cut(s)	16, 88, 282
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	109, 235
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	2 cut(s)	109, 235
BstZI	CGGCCG	1 cut(s)	155
BsuRI	GGCC	4 cut(s)	84, 157, 175, 324
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	155, 173
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	502, 535
CviAII	CATG	1 cut(s)	146
CviQI	GTAC	2 cut(s)	502, 535
DdeI	CTNAG	2 cut(s)	348, 447
DpnI	GATC	2 cut(s)	111, 237
DpnII	GATC	2 cut(s)	109, 235
EaeI	YGGCCR	2 cut(s)	155, 322
EagI	CGGCCG	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	430
EclXI	CGGCCG	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	215
Eco31I	GGTCTC	2 cut(s)	381, 564
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	191
Eco52I	CGGCCG	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	621
EcoRV	GATATC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	1 cut(s)	149
FaiI	YATR	9 cut(s)	147, 228, 300, 302, 403, 405, 550, 567, 600
FatI	CATG	1 cut(s)	145
FauNDI	CATATG	2 cut(s)	300, 403
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	85, 100, 282, 610
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	85, 100, 282, 610
FspBI	CTAG	4 cut(s)	72, 105, 216, 489
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	85, 100, 282, 610
HaeIII	GGCC	4 cut(s)	84, 157, 175, 324
HapII	CCGG	4 cut(s)	154, 158, 325, 391
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	1 cut(s)	313
HpaII	CCGG	4 cut(s)	154, 158, 325, 391
HphI	GGTGA	4 cut(s)	24, 426, 471, 510
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	5 cut(s)	117, 373, 450, 594, 618
Hpy188III	TCNNGA	2 cut(s)	459, 467
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	2 cut(s)	63, 66
HpyAV	CCTTC	2 cut(s)	378, 489
HpyCH4III	ACNGT	5 cut(s)	20, 337, 410, 443, 558
HpyCH4IV	ACGT	2 cut(s)	61, 241
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	8 cut(s)	81, 141, 150, 181, 281, 287, 609, 618
HpyF3I	CTNAG	2 cut(s)	348, 447
HpySE526I	ACGT	2 cut(s)	61, 241
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	109, 235
LmnI	GCTCC	3 cut(s)	541, 606, 618
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	268, 277
MaeI	CTAG	4 cut(s)	72, 105, 216, 489
MaeII	ACGT	2 cut(s)	61, 241
MaeIII	GTNAC	2 cut(s)	20, 47
MalI	GATC	2 cut(s)	111, 237
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	2 cut(s)	109, 235
MboII	GAAGA	3 cut(s)	104, 131, 308
MflI	RGATCY	2 cut(s)	109, 235
MluCI	AATT	2 cut(s)	185, 329
MmeI	TCCRAC	3 cut(s)	140, 572, 596
MnlI	CCTC	7 cut(s)	36, 86, 154, 343, 493, 496, 525
MroNI	GCCGGC	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	4 cut(s)	154, 158, 325, 391
MspR9I	CCNGG	3 cut(s)	326, 392, 623
MvaI	CCWGG	1 cut(s)	623
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	8 cut(s)	81, 141, 150, 181, 281, 287, 609, 618
NaeI	GCCGGC	1 cut(s)	155
NciI	CCSGG	2 cut(s)	326, 392
NdeI	CATATG	2 cut(s)	300, 403
NdeII	GATC	2 cut(s)	109, 235
NgoMIV	GCCGGC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	5 cut(s)	237, 543, 578, 608, 620
NmeAIII	GCCGAG	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	313
PflFI	GACNNNGTC	1 cut(s)	60
PkrI	GCNGC	4 cut(s)	86, 101, 283, 611
PmaCI	CACGTG	1 cut(s)	242
PmlI	CACGTG	1 cut(s)	242
Ppu21I	YACGTR	1 cut(s)	242
PshAI	GACNNNNGTC	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	621
PspCI	CACGTG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	5 cut(s)	237, 543, 578, 608, 620
PspPI	GGNCC	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	109, 235
PsyI	GACNNNGTC	1 cut(s)	60
RsaI	GTAC	2 cut(s)	503, 536
RsaNI	GTAC	2 cut(s)	502, 535
RseI	CAYNNNNRTG	1 cut(s)	303
SatI	GCNGC	4 cut(s)	85, 100, 282, 610
Sau3AI	GATC	2 cut(s)	109, 235
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	326, 392, 623
SetI	ASST	7 cut(s)	17, 64, 244, 370, 512, 536, 578
SfaNI	GCATC	2 cut(s)	268, 277
SfcI	CTRYAG	3 cut(s)	16, 88, 282
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	2 cut(s)	197, 505
SmoI	CTYRAG	2 cut(s)	197, 505
Sse9I	AATT	2 cut(s)	185, 329
SsiI	CCGC	7 cut(s)	38, 85, 100, 194, 415, 499, 610
SspMI	CTAG	4 cut(s)	72, 105, 216, 489
StyD4I	CCNGG	3 cut(s)	324, 390, 621
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	5 cut(s)	20, 337, 410, 443, 558
TaiI	ACGT	2 cut(s)	64, 244
TaqI	TCGA	3 cut(s)	180, 460, 512
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	2 cut(s)	185, 329
TauI	GCSGC	3 cut(s)	87, 102, 612
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	1 cut(s)	446
TseI	GCWGC	1 cut(s)	281
TspRI	CASTG	1 cut(s)	446
Tth111I	GACNNNGTC	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmaJI	CCTAGG	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	4 cut(s)	72, 105, 216, 489
ZraI	GACGTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.