Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

4834858 .. 4836657

Gene Structure 1800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1050500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTTTAGTATACACGAATGTTTTGAAGAAAGTTGGTCTTAGTGTACATGAAGATTTTGAAGAAAGTTTTGAAGTGTTGAAGAATTTCAACTCAATTTTATCTTTGACTCCAACAAGGGAGCCACGTGGCTTTGGATTTGTTCAGTTTGTAGACCCTGCTGATGCTGCTGATGCTAAATACCATATGGATGGTCAAATTCTCCTCGGACGGGAATTGACAGTTGTATTTGCTGAGGAGAACAGAAAGAAACCCTCGGAAATGAGGGCAAGAGACCGTGTTAGGAGTCGGTCATATGATAACAGGCGATCCCGCTCTCGCTATTCACAATCACCGCACTATGCTCGAACATTTTCTCGAAGTCCTGATTATTATTCACCTTCCCCCAGGCCAAGGCGATACTCTAGGTCAATTTCACCTAGAGATAGAAGGTACCAGGACGAATCAGGTCTCCCTTTGGTTCAAGAAGCCATAGCCGCAGTCGGAGCCTGGACTACTCTCAGTAGTGCGGAAGATAATAGAGGTATGTATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

179

Amino Acids

20.54

Weight (kDa)

9.65

Isoelectric Point (pI)

71.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	22 - 73	5.5e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	315
AccI	GTMKAC	2 cut(s)	12, 153
AciI	CCGC	4 cut(s)	313, 335, 477, 509
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	2 cut(s)	85, 198
AcvI	CACGTG	1 cut(s)	128
AfaI	GTAC	2 cut(s)	48, 434
AfiI	CCNNNNNNNGG	2 cut(s)	211, 393
AgsI	TTSAA	6 cut(s)	28, 62, 74, 82, 91, 464
AjnI	CCWGG	3 cut(s)	386, 435, 488
Alw26I	GTCTC	2 cut(s)	267, 455
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	85, 198
Asp700I	GAANNNNTTC	2 cut(s)	86, 352
Asp718I	GGTACC	1 cut(s)	432
AsuHPI	GGTGA	3 cut(s)	324, 369, 408
BanI	GGYRCC	1 cut(s)	432
BbrPI	CACGTG	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	3 cut(s)	388, 437, 490
BcoDI	GTCTC	2 cut(s)	267, 455
BfaI	CTAG	2 cut(s)	405, 420
BisI	GCNGC	2 cut(s)	168, 477
BlsI	GCNGC	2 cut(s)	169, 478
Bme1390I	CCNGG	3 cut(s)	388, 437, 490
BmiI	GGNNCC	3 cut(s)	123, 434, 487
BmrFI	CCNGG	3 cut(s)	388, 437, 490
BmsI	GCATC	2 cut(s)	154, 163
Bpu10I	CCTNAGC	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	128
BsaI	GGTCTC	2 cut(s)	267, 455
BsaJI	CCNNGG	4 cut(s)	205, 255, 386, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 393
BseBI	CCWGG	3 cut(s)	388, 437, 490
BseDI	CCNNGG	4 cut(s)	205, 255, 386, 392
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	211, 393
BseMII	CTCAG	2 cut(s)	225, 514
BseRI	GAGGAG	2 cut(s)	194, 251
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	211, 393
BsmAI	GTCTC	2 cut(s)	267, 455
BsnI	GGCC	1 cut(s)	391
Bso31I	GGTCTC	2 cut(s)	267, 455
Bsp1407I	TGTACA	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	308
BspACI	CCGC	4 cut(s)	313, 335, 477, 509
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	226, 513
BspLI	GGNNCC	3 cut(s)	123, 434, 487
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	432
BspTNI	GGTCTC	2 cut(s)	267, 455
BsrBI	CCGCTC	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	46
BssECI	CCNNGG	4 cut(s)	205, 255, 386, 392
BssMI	GATC	1 cut(s)	308
BssNAI	GTATAC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	392
Bst1107I	GTATAC	1 cut(s)	13
Bst2UI	CCWGG	3 cut(s)	388, 437, 490
Bst4CI	ACNGT	2 cut(s)	223, 278
BstAUI	TGTACA	1 cut(s)	46
BstBAI	YACGTR	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	41, 234, 500
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	311
BstMAI	GTCTC	2 cut(s)	267, 455
BstMBI	GATC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 173, 476, 485
BstNI	CCWGG	3 cut(s)	388, 437, 490
BstSCI	CCNGG	3 cut(s)	386, 435, 488
BstV1I	GCAGC	1 cut(s)	154
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstZ17I	GTATAC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	47, 433
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	6 cut(s)	124, 132, 391, 470, 476, 488
CviKI_1	RGCY	6 cut(s)	124, 132, 391, 470, 476, 488
CviQI	GTAC	2 cut(s)	47, 433
DdeI	CTNAG	3 cut(s)	41, 234, 500
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	392
Eco31I	GGTCTC	2 cut(s)	267, 455
Eco72I	CACGTG	1 cut(s)	128
EcoRII	CCWGG	3 cut(s)	386, 435, 488
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	1 cut(s)	53
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	1 cut(s)	49
FauI	CCCGC	1 cut(s)	320
FauNDI	CATATG	2 cut(s)	186, 295
FblI	GTMKAC	2 cut(s)	12, 153
Fnu4HI	GCNGC	2 cut(s)	168, 477
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	168, 477
FspBI	CTAG	2 cut(s)	405, 420
GluI	GCNGC	2 cut(s)	168, 477
HaeIII	GGCC	1 cut(s)	391
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	3 cut(s)	109, 286, 443
HphI	GGTGA	3 cut(s)	324, 369, 408
Hpy166II	GTNNAC	3 cut(s)	13, 47, 154
Hpy188I	TCNGA	3 cut(s)	209, 259, 485
Hpy188III	TCNNGA	3 cut(s)	357, 365, 464
Hpy8I	GTNNAC	3 cut(s)	13, 47, 154
HpyAV	CCTTC	2 cut(s)	390, 423
HpyCH4III	ACNGT	2 cut(s)	223, 278
HpyCH4IV	ACGT	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 173, 476, 485
HpyF3I	CTNAG	3 cut(s)	41, 234, 500
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	53
KpnI	GGTACC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	308
LmnI	GCTCC	2 cut(s)	121, 485
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	2 cut(s)	154, 163
MaeI	CTAG	2 cut(s)	405, 420
MaeII	ACGT	1 cut(s)	127
MalI	GATC	1 cut(s)	310
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	1 cut(s)	308
MboII	GAAGA	5 cut(s)	40, 65, 74, 94, 524
MluCI	AATT	5 cut(s)	85, 96, 198, 215, 411
MlyI	GAGTC	2 cut(s)	103, 295
MmeI	TCCRAC	2 cut(s)	137, 463
MnlI	CCTC	5 cut(s)	215, 229, 258, 265, 515
MroXI	GAANNNNTTC	2 cut(s)	86, 352
MslI	CAYNNNNRTG	1 cut(s)	189
MspR9I	CCNGG	3 cut(s)	388, 437, 490
MvaI	CCWGG	3 cut(s)	388, 437, 490
MwoI	GCNNNNNNNGC	4 cut(s)	167, 173, 476, 485
NdeI	CATATG	2 cut(s)	186, 295
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	3 cut(s)	123, 434, 487
PdmI	GAANNNNTTC	2 cut(s)	86, 352
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	169, 478
PleI	GAGTC	2 cut(s)	103, 294
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
PpsI	GAGTC	2 cut(s)	103, 294
Ppu21I	YACGTR	1 cut(s)	128
Psp6I	CCWGG	3 cut(s)	386, 435, 488
PspCI	CACGTG	1 cut(s)	128
PspGI	CCWGG	3 cut(s)	386, 435, 488
PspN4I	GGNNCC	3 cut(s)	123, 434, 487
RsaI	GTAC	2 cut(s)	48, 434
RsaNI	GTAC	2 cut(s)	47, 433
RseI	CAYNNNNRTG	1 cut(s)	189
SatI	GCNGC	2 cut(s)	168, 477
Sau3AI	GATC	1 cut(s)	308
SchI	GAGTC	2 cut(s)	103, 295
ScrFI	CCNGG	3 cut(s)	388, 437, 490
SetI	ASST	7 cut(s)	130, 382, 410, 421, 434, 451, 526
SfaNI	GCATC	2 cut(s)	154, 163
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	5 cut(s)	85, 96, 198, 215, 411
SsiI	CCGC	4 cut(s)	313, 335, 477, 509
SspMI	CTAG	2 cut(s)	405, 420
StyD4I	CCNGG	3 cut(s)	386, 435, 488
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	223, 278
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	346, 358
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	5 cut(s)	85, 96, 198, 215, 411
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	443
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	66
XapI	RAATTY	2 cut(s)	85, 198
XmiI	GTMKAC	2 cut(s)	12, 153
XmnI	GAANNNNTTC	2 cut(s)	86, 352
XspI	CTAG	2 cut(s)	405, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.