Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Reverse (-)

37629595 .. 37632669

Gene Structure 3075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45331.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAGGGGGAGGAGTTACAGTCCATCACCACCACCAAGGGGATATGGTAGGAGAGGACGGAGTCCAAGCCCAAGGGGTCGTTATGGTGGTCATAGTAGAGACAGAGATATGCCTACAAGTCTCCTTGTTCGTAACCTTCGCCATGATTGCAGGCCAGATGATCTTCGGCGTCCATTTGGGCAGTTTGGTGCTCTGAAGGACATTTACTTGCCAAAGGATTATTATTCCGGGCAACCTCGTGGTTTTGGATTTGTCCAATTTGTTGATCCTGCTGATGCTGCAGAGGCTAAATATCAAATGGATGGTCATGTCCTTCTTGGTCGTGAGGTAACTGTTGTATTTGCAGAGGAGAACAGGAAGAAGCCGTCTGATATGAGGCAAAGGGAGGGTCCAAGCTCCAGGGGTAGTGGTCGACATCGCGATCGAAGAGGGTCTCCTCCTCGCTATTCACGCTCTCCACGATATTCCCGATCTCCACCTCCACGTCATGCAAGATCTCGGCCACGCAGCCGTTCTTATGATTCCCCTCCCCCAAAAAGAAGGGAGTATTCGAGATCTGTCTCACCCCCAGGGAGAAGGTACAGTAGAGAGAGATCGTTTTCCCGATCCCCTCCTCGACCATATAATGGCTCAAGGGGACACAGTCAGAGTCCAGTTAGGAGTCCAAGCCGGAGCAGAAGCCAGAGCCCAAGGCGAAATGGTAGAAGCTTGAGTCCTAGGCCACAAAATATTGATCATGAAGACTACTCAAGGGAACCAAATGGAGAGAGGTCCCTTAGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

262

Amino Acids

30.02

Weight (kDa)

11.5

Isoelectric Point (pI)

108.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	41 - 110	4.7e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccI	GTMKAC	1 cut(s)	412
AccII	CGCG	1 cut(s)	420
AclWI	GGATC	2 cut(s)	260, 600
AcoI	YGGCCR	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	38, 626
AjiI	CACGTC	1 cut(s)	485
AjnI	CCWGG	2 cut(s)	398, 568
AluBI	AGCT	2 cut(s)	396, 708
AluI	AGCT	2 cut(s)	396, 708
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	4 cut(s)	93, 125, 438, 565
AlwI	GGATC	2 cut(s)	260, 600
AoxI	GGCC	3 cut(s)	152, 500, 719
ApeKI	GCWGC	2 cut(s)	278, 507
ArsI	GACNNNNNNTTYG	4 cut(s)	289, 321, 373, 405
AspA2I	CCTAGG	1 cut(s)	716
AspS9I	GGNCC	2 cut(s)	389, 771
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	18, 555
AvaII	GGWCC	2 cut(s)	389, 771
AvrII	CCTAGG	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	689
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BauI	CACGAG	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	265, 519
BccI	CCATC	2 cut(s)	31, 296
BceAI	ACGGC	2 cut(s)	349, 495
BciT130I	CCWGG	2 cut(s)	400, 570
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	4 cut(s)	93, 125, 438, 565
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	1 cut(s)	279
BglII	AGATCT	2 cut(s)	494, 554
BisI	GCNGC	2 cut(s)	279, 508
BlnI	CCTAGG	1 cut(s)	716
BlsI	GCNGC	2 cut(s)	280, 509
Bme1390I	CCNGG	3 cut(s)	229, 400, 570
Bme18I	GGWCC	2 cut(s)	389, 771
BmgBI	CACGTC	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	389, 771
BmiI	GGNNCC	3 cut(s)	390, 756, 773
BmrFI	CCNGG	3 cut(s)	229, 400, 570
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	747
BpmI	CTGGAG	1 cut(s)	382
BpuEI	CTTGAG	3 cut(s)	616, 730, 733
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	7 cut(s)	35, 71, 399, 568, 569, 689, 716
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 626
Bse1I	ACTGG	1 cut(s)	653
BseBI	CCWGG	2 cut(s)	400, 570
BseDI	CCNNGG	7 cut(s)	35, 71, 399, 568, 569, 689, 716
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	38, 626
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	5 cut(s)	25, 362, 426, 429, 603
BseXI	GCAGC	2 cut(s)	265, 519
Bsh1236I	CGCG	1 cut(s)	420
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	3 cut(s)	154, 502, 721
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	228, 670
BslFI	GGGAC	2 cut(s)	651, 757
BslI	CCNNNNNNNGG	2 cut(s)	38, 626
BsmAI	GTCTC	4 cut(s)	93, 125, 438, 565
BsmFI	GGGAC	2 cut(s)	651, 757
BsnI	GGCC	3 cut(s)	154, 502, 721
Bso31I	GGTCTC	1 cut(s)	438
Bsp1286I	GDGCHC	2 cut(s)	193, 689
Bsp143I	GATC	9 cut(s)	160, 265, 421, 470, 494, 554, 593, 605, 733
Bsp68I	TCGCGA	1 cut(s)	420
BspANI	GGCC	3 cut(s)	154, 502, 721
BspFNI	CGCG	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	3 cut(s)	390, 756, 773
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	2 cut(s)	260, 600
BspTNI	GGTCTC	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	653
BssECI	CCNNGG	7 cut(s)	35, 71, 399, 568, 569, 689, 716
BssMI	GATC	9 cut(s)	160, 265, 421, 470, 494, 554, 593, 605, 733
BssNI	GRCGYC	1 cut(s)	169
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	4 cut(s)	35, 71, 689, 716
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	400, 570
Bst4CI	ACNGT	4 cut(s)	20, 334, 584, 644
Bst6I	CTCTTC	1 cut(s)	421
BstACI	GRCGYC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	776
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	420
BstKTI	GATC	9 cut(s)	163, 268, 424, 473, 497, 557, 596, 608, 736
BstMAI	GTCTC	4 cut(s)	93, 125, 438, 565
BstMBI	GATC	9 cut(s)	160, 265, 421, 470, 494, 554, 593, 605, 733
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 278, 284, 450
BstNI	CCWGG	2 cut(s)	400, 570
BstSCI	CCNGG	3 cut(s)	227, 398, 568
BstSFI	CTRYAG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	265, 519
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	2 cut(s)	494, 554
BstYI	RGATCY	2 cut(s)	494, 554
BsuRI	GGCC	3 cut(s)	154, 502, 721
BtgZI	GCGATG	1 cut(s)	401
BtrI	CACGTC	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	307
BtuMI	TCGCGA	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	152
CciI	TCATGA	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	389, 771
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	4 cut(s)	143, 308, 488, 737
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	1 cut(s)	776
DpnI	GATC	9 cut(s)	162, 267, 423, 472, 496, 556, 595, 607, 735
DpnII	GATC	9 cut(s)	160, 265, 421, 470, 494, 554, 593, 605, 733
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	4 cut(s)	35, 71, 689, 716
Eco24I	GRGCYC	1 cut(s)	689
Eco31I	GGTCTC	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	389, 771
Eco57I	CTGAAG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	771
EcoRII	CCWGG	2 cut(s)	398, 568
EcoT14I	CCWWGG	4 cut(s)	35, 71, 689, 716
EcoT38I	GRGCYC	1 cut(s)	689
ErhI	CCWWGG	4 cut(s)	35, 71, 689, 716
FaeI	CATG	4 cut(s)	146, 311, 491, 740
FaqI	GGGAC	2 cut(s)	651, 757
FatI	CATG	4 cut(s)	142, 307, 487, 736
FbaI	TGATCA	1 cut(s)	733
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	279, 508
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	2 cut(s)	279, 508
FspBI	CTAG	1 cut(s)	717
GluI	GCNGC	2 cut(s)	279, 508
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	3 cut(s)	154, 502, 721
HapII	CCGG	2 cut(s)	228, 670
HgaI	GACGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	146, 311, 491, 740
HincII	GTYRAC	1 cut(s)	413
HindII	GTYRAC	1 cut(s)	413
HindIII	AAGCTT	1 cut(s)	706
HinfI	GANTC	5 cut(s)	61, 521, 649, 661, 712
HpaII	CCGG	2 cut(s)	228, 670
HphI	GGTGA	2 cut(s)	18, 555
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	195, 370, 648
Hpy188III	TCNNGA	6 cut(s)	323, 419, 468, 552, 603, 737
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	5 cut(s)	146, 190, 323, 534, 570
HpyCH4III	ACNGT	4 cut(s)	20, 334, 584, 644
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	4 cut(s)	150, 281, 344, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 278, 284, 450
HpyF3I	CTNAG	1 cut(s)	776
HpySE526I	ACGT	1 cut(s)	484
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	4 cut(s)	146, 311, 491, 740
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	9 cut(s)	160, 265, 421, 470, 494, 554, 593, 605, 733
LmnI	GCTCC	2 cut(s)	401, 672
Lsp1109I	GCAGC	2 cut(s)	265, 519
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	3 cut(s)	14, 131, 328
MalI	GATC	9 cut(s)	162, 267, 423, 472, 496, 556, 595, 607, 735
MboI	GATC	9 cut(s)	160, 265, 421, 470, 494, 554, 593, 605, 733
MboII	GAAGA	4 cut(s)	155, 370, 438, 752
MflI	RGATCY	2 cut(s)	494, 554
MhlI	GDGCHC	2 cut(s)	193, 689
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	4 cut(s)	70, 658, 670, 721
MseI	TTAA	1 cut(s)	784
MspI	CCGG	2 cut(s)	228, 670
MspR9I	CCNGG	3 cut(s)	229, 400, 570
MvaI	CCWGG	2 cut(s)	400, 570
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	4 cut(s)	147, 278, 284, 450
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	9 cut(s)	160, 265, 421, 470, 494, 554, 593, 605, 733
NlaIII	CATG	4 cut(s)	146, 311, 491, 740
NlaIV	GGNNCC	3 cut(s)	390, 756, 773
NmeAIII	GCCGAG	1 cut(s)	478
NruI	TCGCGA	1 cut(s)	420
PagI	TCATGA	1 cut(s)	736
PasI	CCCWGGG	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	2 cut(s)	457, 466
PfeI	GAWTC	1 cut(s)	521
PflFI	GACNNNGTC	2 cut(s)	60, 642
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	2 cut(s)	280, 509
Ple19I	CGATCG	1 cut(s)	424
PleI	GAGTC	4 cut(s)	69, 657, 669, 720
PpsI	GAGTC	4 cut(s)	69, 657, 669, 720
PpuMI	RGGWCCY	1 cut(s)	771
Psp5II	RGGWCCY	1 cut(s)	771
Psp6I	CCWGG	2 cut(s)	398, 568
PspGI	CCWGG	2 cut(s)	398, 568
PspN4I	GGNNCC	3 cut(s)	390, 756, 773
PspPI	GGNCC	2 cut(s)	389, 771
PspPPI	RGGWCCY	1 cut(s)	771
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	494, 554
PsyI	GACNNNGTC	2 cut(s)	60, 642
PvuI	CGATCG	1 cut(s)	424
RruI	TCGCGA	1 cut(s)	420
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SalI	GTCGAC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	784
SatI	GCNGC	2 cut(s)	279, 508
Sau3AI	GATC	9 cut(s)	160, 265, 421, 470, 494, 554, 593, 605, 733
Sau96I	GGNCC	2 cut(s)	389, 771
SchI	GAGTC	4 cut(s)	70, 658, 670, 721
ScrFI	CCNGG	3 cut(s)	229, 400, 570
SduI	GDGCHC	2 cut(s)	193, 689
SetI	ASST	9 cut(s)	138, 238, 330, 398, 481, 487, 581, 710, 773
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	2 cut(s)	389, 771
SmlI	CTYRAG	3 cut(s)	631, 709, 748
SmoI	CTYRAG	3 cut(s)	631, 709, 748
Sse9I	AATT	1 cut(s)	257
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	1 cut(s)	717
StyD4I	CCNGG	3 cut(s)	227, 398, 568
StyI	CCWWGG	4 cut(s)	35, 71, 689, 716
TaaI	ACNGT	4 cut(s)	20, 334, 584, 644
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	4 cut(s)	412, 424, 551, 616
TasI	AATT	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	1 cut(s)	784
Tru9I	TTAA	1 cut(s)	784
TseI	GCWGC	2 cut(s)	278, 507
TspDTI	ATGAA	1 cut(s)	753
TspGWI	ACGGA	1 cut(s)	73
Tth111I	GACNNNGTC	2 cut(s)	60, 642
Van91I	CCANNNNNTGG	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	389, 771
XmaJI	CCTAGG	1 cut(s)	716
XmiI	GTMKAC	1 cut(s)	412
XspI	CTAG	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.