Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008074.1

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Reverse (-)

60482 .. 61213

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008074.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgttattgtggtgcagggatccacgtggctttggatttgttcagtttgtagaccctgctgatgctgcagatgccaagcaccatatggatgggcaaattcttcttgggcgggaattgacagttgtatttgctgaggagaataggaagaaaccctcggaaatgaaggcaagagaccgtcatatgatagcaggcggagcatttattctcgttcaccacgctatgctcaaacctactctcgaagtccaggttattattcaccctcccctaggagaaggcggtactcaaggtcgatttcaccaagaggtagggggtaccgggagcgatcatactcaaggtctccctatggttcaaggagccgcagtcgaagtcggagctatagcaggagccgcagtcgaagcctggactactctcgctagtgtacttgatagagtgatttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

146

Amino Acids

15.7

Weight (kDa)

6.03

Isoelectric Point (pI)

13.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	5 cut(s)	109, 192, 276, 357, 387
AclWI	GGATC	2 cut(s)	14, 27
AcsI	RAATTY	1 cut(s)	96
AcvI	CACGTG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	280, 313, 420
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	243, 398
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	165, 341
AlwI	GGATC	2 cut(s)	14, 27
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	96
Asp718I	GGTACC	1 cut(s)	311
AspA2I	CCTAGG	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	3 cut(s)	203, 248, 287
AvrII	CCTAGG	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	311
BbrPI	CACGTG	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	2 cut(s)	245, 400
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	165, 341
BfaI	CTAG	2 cut(s)	266, 414
BfmI	CTRYAG	2 cut(s)	66, 375
BisI	GCNGC	3 cut(s)	66, 357, 387
BlnI	CCTAGG	1 cut(s)	265
BlsI	GCNGC	3 cut(s)	67, 358, 388
Bme1390I	CCNGG	3 cut(s)	245, 316, 400
BmiI	GGNNCC	4 cut(s)	21, 313, 355, 385
BmrFI	CCNGG	3 cut(s)	245, 316, 400
BmsI	GCATC	2 cut(s)	52, 61
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	2 cut(s)	267, 315
BpuMI	CCSGG	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	26
BsaI	GGTCTC	2 cut(s)	165, 341
BsaJI	CCNNGG	2 cut(s)	153, 265
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	245, 400
BseDI	CCNNGG	2 cut(s)	153, 265
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	165, 341
Bso31I	GGTCTC	2 cut(s)	165, 341
Bsp143I	GATC	2 cut(s)	19, 322
BspACI	CCGC	5 cut(s)	109, 192, 276, 357, 387
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	21, 313, 355, 385
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	2 cut(s)	14, 27
BspT107I	GGYRCC	1 cut(s)	311
BspTNI	GGTCTC	2 cut(s)	165, 341
BssECI	CCNNGG	2 cut(s)	153, 265
BssMI	GATC	2 cut(s)	19, 322
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	2 cut(s)	245, 400
Bst4CI	ACNGT	2 cut(s)	121, 176
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	132
BstENI	CCTNNNNNAGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	2 cut(s)	22, 325
BstMAI	GTCTC	2 cut(s)	165, 341
BstMBI	GATC	2 cut(s)	19, 322
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 71, 194, 386, 395
BstNI	CCWGG	2 cut(s)	245, 400
BstSCI	CCNGG	3 cut(s)	243, 314, 398
BstSFI	CTRYAG	2 cut(s)	66, 375
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	279, 312, 419
CviJI	RGCY	5 cut(s)	30, 356, 374, 386, 398
CviKI_1	RGCY	5 cut(s)	30, 356, 374, 386, 398
CviQI	GTAC	3 cut(s)	279, 312, 419
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	2 cut(s)	21, 324
DpnII	GATC	2 cut(s)	19, 322
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	265
Eco31I	GGTCTC	2 cut(s)	165, 341
Eco72I	CACGTG	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	243, 398
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaiI	YATR	8 cut(s)	84, 86, 180, 182, 221, 327, 344, 377
FauI	CCCGC	1 cut(s)	102
FauNDI	CATATG	2 cut(s)	84, 180
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	66, 357, 387
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	66, 357, 387
FspBI	CTAG	2 cut(s)	266, 414
GluI	GCNGC	3 cut(s)	66, 357, 387
HapII	CCGG	1 cut(s)	315
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	3 cut(s)	203, 248, 287
Hpy166II	GTNNAC	3 cut(s)	52, 211, 419
Hpy188I	TCNGA	2 cut(s)	157, 371
Hpy188III	TCNNGA	2 cut(s)	236, 438
Hpy8I	GTNNAC	3 cut(s)	52, 211, 419
HpyAV	CCTTC	2 cut(s)	157, 266
HpyCH4III	ACNGT	2 cut(s)	121, 176
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	15, 68
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 71, 194, 386, 395
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	25
KpnI	GGTACC	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	19, 322
LmnI	GCTCC	5 cut(s)	194, 318, 353, 371, 383
LpnPI	CCDG	8 cut(s)	69, 174, 230, 257, 328, 366, 385, 412
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	2 cut(s)	52, 61
MaeI	CTAG	2 cut(s)	266, 414
MaeII	ACGT	1 cut(s)	25
MalI	GATC	2 cut(s)	21, 324
MboI	GATC	2 cut(s)	19, 322
MboII	GAAGA	2 cut(s)	92, 157
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	2 cut(s)	96, 113
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	4 cut(s)	127, 163, 270, 295
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	3 cut(s)	245, 316, 400
MvaI	CCWGG	2 cut(s)	245, 400
MwoI	GCNNNNNNNGC	5 cut(s)	65, 71, 194, 386, 395
NciI	CCSGG	1 cut(s)	316
NdeI	CATATG	2 cut(s)	84, 180
NdeII	GATC	2 cut(s)	19, 322
NlaIV	GGNNCC	4 cut(s)	21, 313, 355, 385
PkrI	GCNGC	3 cut(s)	67, 358, 388
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	243, 398
PspCI	CACGTG	1 cut(s)	26
PspGI	CCWGG	2 cut(s)	243, 398
PspN4I	GGNNCC	4 cut(s)	21, 313, 355, 385
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	3 cut(s)	280, 313, 420
RsaNI	GTAC	3 cut(s)	279, 312, 419
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	3 cut(s)	66, 357, 387
Sau3AI	GATC	2 cut(s)	19, 322
ScrFI	CCNGG	3 cut(s)	245, 316, 400
SetI	ASST	7 cut(s)	28, 232, 249, 289, 306, 337, 376
SfaNI	GCATC	2 cut(s)	52, 61
SfcI	CTRYAG	2 cut(s)	66, 375
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	282, 330
SmoI	CTYRAG	2 cut(s)	282, 330
Sse9I	AATT	2 cut(s)	96, 113
SsiI	CCGC	5 cut(s)	109, 192, 276, 357, 387
SspMI	CTAG	2 cut(s)	266, 414
StyD4I	CCNGG	3 cut(s)	243, 314, 398
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	121, 176
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	4 cut(s)	237, 289, 363, 393
TasI	AATT	2 cut(s)	96, 113
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	2 cut(s)	359, 389
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	176
XagI	CCTNNNNNAGG	1 cut(s)	264
XapI	RAATTY	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmaJI	CCTAGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	2 cut(s)	266, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.