Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Reverse (-)

4429256 .. 4432159

Gene Structure 2904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGAGGAAGGAGCTACACGCCATCACCACCAAGGGGTTATGGAAGGAGGGGCCGGAGCCCTAGCCCTCGGGGCCGGTTTGGTGGGAGTCGTGACAGTGATCTCCCAACCAGTCTCTTGGTTCGCAACTTACGTCATGATTGCAGGCAAGAAGACCTCAGGAGGCCATTTGAGCAGTTTGGTCCCGTCAAGGACATCTACCTTCCTAGGGATTACTATACTGGAGATCCAAGGGGGTTTGGATTCATTCAGTTTATGGATCCTGCTGATGCTGCTGAGGCTAAACATCAAATGGATGGTTATCTTCTTCTTGGTCGTGAGTTGACTGTCGTATTTGCTGAAGAAAACCGGAAGAAGCCAACTGAGATGAGAACAAGGGATCGAGGTGGAAGGAGCAACAGATTCCAGGACAGAAGACGTTCTCCTCCTCGGTACTCTCGGTCTCCTCCTCCTCGCCGTGGTCGTAGATCACGATCACGTAGCCGCGGCTATAATTCTCCTCCCGCTAAAAGACATCAATCTAGGTCTGTCTCACCTCAGGATAGACGATATGAGAAGGAGAGGTCATACTCTCGCTCACCACCCCATAATGGCTCAAGGGTTCGCAGTGGAAGTCCTGGGAGAGTGAAGAGCCACAGCAGAAGCCCAAGAAGAAGCGTGAGCCCAAGAAAAAACAGGAGCTACACGCCAGAACAAGCAAGGAGCCAAAGCCCTGTCCCTAGGCAGAGCAGGAGCCCGACCCCAGTCCCTCGTGGAGCACAAAATGGAGACCGTTCTCCAAGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

262

Amino Acids

30.23

Weight (kDa)

11.68

Isoelectric Point (pI)

112.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	39 - 108	5.4e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	486
AciI	CCGC	3 cut(s)	484, 486, 504
AclWI	GGATC	4 cut(s)	221, 254, 267, 387
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	4 cut(s)	35, 208, 458, 590
AjnI	CCWGG	2 cut(s)	405, 616
AluBI	AGCT	2 cut(s)	15, 681
AluI	AGCT	2 cut(s)	15, 681
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	4 cut(s)	119, 447, 535, 762
AlwI	GGATC	4 cut(s)	221, 254, 267, 387
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	3 cut(s)	52, 73, 164
ApeKI	GCWGC	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	418
AspA2I	CCTAGG	2 cut(s)	206, 719
AspS9I	GGNCC	3 cut(s)	52, 73, 182
AsuHPI	GGTGA	3 cut(s)	18, 525, 570
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	182
AvrII	CCTAGG	2 cut(s)	206, 719
AxyI	CCTNAGG	2 cut(s)	158, 537
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	3 cut(s)	62, 665, 737
BauI	CACGAG	1 cut(s)	750
BbsI	GAAGAC	2 cut(s)	159, 421
Bbv12I	GWGCWC	1 cut(s)	760
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	2 cut(s)	31, 290
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	2 cut(s)	407, 618
BcoDI	GTCTC	4 cut(s)	119, 447, 535, 762
BfaI	CTAG	4 cut(s)	63, 207, 522, 720
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	3 cut(s)	273, 484, 487
BlnI	CCTAGG	2 cut(s)	206, 719
BlsI	GCNGC	3 cut(s)	274, 485, 488
Bme1390I	CCNGG	2 cut(s)	407, 618
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	52, 73, 182
BmiI	GGNNCC	7 cut(s)	53, 59, 74, 184, 261, 704, 734
BmrFI	CCNGG	2 cut(s)	407, 618
BmrI	ACTGGG	1 cut(s)	737
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	737
BoxI	GACNNNNGTC	1 cut(s)	743
BpiI	GAAGAC	2 cut(s)	159, 421
BpmI	CTGGAG	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	580
BsaAI	YACGTR	1 cut(s)	479
BsaBI	GATNNNNATC	2 cut(s)	300, 472
BsaI	GGTCTC	2 cut(s)	447, 762
BsaJI	CCNNGG	9 cut(s)	32, 68, 206, 230, 428, 457, 484, 617, 719
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 208, 458, 590
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	4 cut(s)	111, 226, 743, 784
Bse21I	CCTNAGG	2 cut(s)	158, 537
Bse8I	GATNNNNATC	2 cut(s)	300, 472
BseBI	CCWGG	2 cut(s)	407, 618
BseDI	CCNNGG	9 cut(s)	32, 68, 206, 230, 428, 457, 484, 617, 719
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	2 cut(s)	300, 472
BseLI	CCNNNNNNNGG	4 cut(s)	35, 208, 458, 590
BseMII	CTCAG	4 cut(s)	172, 267, 354, 551
BseNI	ACTGG	4 cut(s)	111, 226, 743, 784
BseRI	GAGGAG	6 cut(s)	414, 417, 435, 438, 441, 489
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	3 cut(s)	54, 75, 166
BsiHKAI	GWGCWC	1 cut(s)	760
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	55, 76, 349
BslFI	GGGAC	3 cut(s)	168, 701, 731
BslI	CCNNNNNNNGG	4 cut(s)	35, 208, 458, 590
BsmAI	GTCTC	4 cut(s)	119, 447, 535, 762
BsmFI	GGGAC	3 cut(s)	168, 701, 731
BsnI	GGCC	3 cut(s)	54, 75, 166
Bso31I	GGTCTC	2 cut(s)	447, 762
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	4 cut(s)	62, 665, 737, 760
Bsp143I	GATC	6 cut(s)	100, 226, 259, 379, 467, 473
BspACI	CCGC	3 cut(s)	484, 486, 504
BspANI	GGCC	3 cut(s)	54, 75, 166
BspCNI	CTCAG	4 cut(s)	171, 268, 355, 550
BspFNI	CGCG	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	7 cut(s)	53, 59, 74, 184, 261, 704, 734
BspPI	GGATC	4 cut(s)	221, 254, 267, 387
BspQI	GCTCTTC	1 cut(s)	623
BspTNI	GGTCTC	2 cut(s)	447, 762
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	4 cut(s)	111, 226, 743, 784
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	9 cut(s)	32, 68, 206, 230, 428, 457, 484, 617, 719
BssMI	GATC	6 cut(s)	100, 226, 259, 379, 467, 473
BssSI	CACGAG	1 cut(s)	750
BssT1I	CCWWGG	4 cut(s)	32, 206, 230, 719
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	407, 618
Bst4CI	ACNGT	3 cut(s)	98, 328, 773
Bst6I	CTCTTC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	4 cut(s)	158, 276, 363, 537
BstDSI	CCRYGG	2 cut(s)	457, 484
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	486
BstKTI	GATC	6 cut(s)	103, 229, 262, 382, 470, 476
BstMAI	GTCTC	4 cut(s)	119, 447, 535, 762
BstMBI	GATC	6 cut(s)	100, 226, 259, 379, 467, 473
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 172, 272, 278
BstNI	CCWGG	2 cut(s)	407, 618
BstPAI	GACNNNNGTC	1 cut(s)	743
BstSCI	CCNGG	2 cut(s)	405, 616
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	2 cut(s)	159, 421
BstX2I	RGATCY	2 cut(s)	226, 259
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	2 cut(s)	226, 259
Bsu36I	CCTNAGG	2 cut(s)	158, 537
BsuRI	GGCC	3 cut(s)	54, 75, 166
BtgI	CCRYGG	2 cut(s)	457, 484
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	2 cut(s)	103, 613
Cac8I	GCNNGC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	52, 73, 182
Cfr42I	CCGCGG	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	1 cut(s)	137
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	4 cut(s)	158, 276, 363, 537
DpnI	GATC	6 cut(s)	102, 228, 261, 381, 469, 475
DpnII	GATC	6 cut(s)	100, 226, 259, 379, 467, 473
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Eco130I	CCWWGG	4 cut(s)	32, 206, 230, 719
Eco24I	GRGCYC	3 cut(s)	62, 665, 737
Eco31I	GGTCTC	2 cut(s)	447, 762
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	360
Eco81I	CCTNAGG	2 cut(s)	158, 537
Eco88I	CYCGRG	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	405, 616
EcoT14I	CCWWGG	4 cut(s)	32, 206, 230, 719
EcoT38I	GRGCYC	3 cut(s)	62, 665, 737
ErhI	CCWWGG	4 cut(s)	32, 206, 230, 719
FaeI	CATG	1 cut(s)	140
FaiI	YATR	8 cut(s)	42, 138, 219, 257, 492, 552, 568, 588
FaqI	GGGAC	3 cut(s)	168, 701, 731
FatI	CATG	1 cut(s)	136
FauI	CCCGC	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	273, 484, 487
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	3 cut(s)	62, 665, 737
Fsp4HI	GCNGC	3 cut(s)	273, 484, 487
FspBI	CTAG	4 cut(s)	63, 207, 522, 720
GluI	GCNGC	3 cut(s)	273, 484, 487
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	54, 75, 166
HapII	CCGG	3 cut(s)	55, 76, 349
Hin1II	CATG	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	3 cut(s)	88, 243, 402
HpaII	CCGG	3 cut(s)	55, 76, 349
HphI	GGTGA	3 cut(s)	18, 525, 570
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188III	TCNNGA	6 cut(s)	92, 137, 160, 317, 471, 539
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	5 cut(s)	3, 39, 212, 384, 550
HpyCH4III	ACNGT	3 cut(s)	98, 328, 773
HpyCH4IV	ACGT	3 cut(s)	133, 418, 478
HpyCH4V	TGCA	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 172, 272, 278
HpyF3I	CTNAG	4 cut(s)	158, 276, 363, 537
HpySE526I	ACGT	3 cut(s)	133, 418, 478
Hsp92II	CATG	1 cut(s)	140
KspI	CCGCGG	1 cut(s)	487
Kzo9I	GATC	6 cut(s)	100, 226, 259, 379, 467, 473
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	7 cut(s)	12, 57, 393, 678, 702, 732, 755
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	4 cut(s)	63, 207, 522, 720
MaeII	ACGT	3 cut(s)	133, 418, 478
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	6 cut(s)	102, 228, 261, 381, 469, 475
MboI	GATC	6 cut(s)	100, 226, 259, 379, 467, 473
MboII	GAAGA	8 cut(s)	164, 296, 299, 353, 364, 426, 640, 663
MflI	RGATCY	2 cut(s)	226, 259
MhlI	GDGCHC	4 cut(s)	62, 665, 737, 760
MluCI	AATT	1 cut(s)	493
MlyI	GAGTC	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	418
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	3 cut(s)	55, 76, 349
MspR9I	CCNGG	2 cut(s)	407, 618
MvaI	CCWGG	2 cut(s)	407, 618
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	4 cut(s)	72, 172, 272, 278
NdeII	GATC	6 cut(s)	100, 226, 259, 379, 467, 473
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	7 cut(s)	53, 59, 74, 184, 261, 704, 734
NmuCI	GTSAC	1 cut(s)	92
PagI	TCATGA	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	3 cut(s)	130, 460, 469
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	243, 402
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	3 cut(s)	274, 485, 488
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	479
PshAI	GACNNNNGTC	1 cut(s)	743
Psp6I	CCWGG	2 cut(s)	405, 616
PspGI	CCWGG	2 cut(s)	405, 616
PspN4I	GGNNCC	7 cut(s)	53, 59, 74, 184, 261, 704, 734
PspPI	GGNCC	3 cut(s)	52, 73, 182
PsuI	RGATCY	2 cut(s)	226, 259
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacII	CCGCGG	1 cut(s)	487
SapI	GCTCTTC	1 cut(s)	623
SatI	GCNGC	3 cut(s)	273, 484, 487
Sau3AI	GATC	6 cut(s)	100, 226, 259, 379, 467, 473
Sau96I	GGNCC	3 cut(s)	52, 73, 182
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	407, 618
SduI	GDGCHC	4 cut(s)	62, 665, 737, 760
SfaNI	GCATC	1 cut(s)	259
Sfr303I	CCGCGG	1 cut(s)	487
SgrBI	CCGCGG	1 cut(s)	487
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	3 cut(s)	484, 486, 504
SspMI	CTAG	4 cut(s)	63, 207, 522, 720
StyD4I	CCNGG	2 cut(s)	405, 616
StyI	CCWWGG	4 cut(s)	32, 206, 230, 719
TaaI	ACNGT	3 cut(s)	98, 328, 773
TaiI	ACGT	3 cut(s)	136, 421, 481
TaqI	TCGA	1 cut(s)	382
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	1 cut(s)	493
TauI	GCSGC	2 cut(s)	486, 489
TfiI	GAWTC	2 cut(s)	243, 402
TscAI	CASTG	2 cut(s)	103, 613
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	235
TspRI	CASTG	2 cut(s)	103, 613
VpaK11BI	GGWCC	1 cut(s)	182
XmaJI	CCTAGG	2 cut(s)	206, 719
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	4 cut(s)	63, 207, 522, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.