Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Reverse (-)

26285059 .. 26288316

Gene Structure 3258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCGTATGTCTATTGGAAAATTATTCATGCAGGGTTGTCAAGTTCAATCCCCAACCTACAGGCCATCTCAACAGCCGAAGCCGAAGCCACAGCCATTCAATCACAAACATCACAAAGCTCTTGTTTTCGAACGCCTCACCACGGCCCAATCTCTACACGGTGCGAGAAGAATGAGGGGGAGAAGCTACAGTTACAGCCCTTCACCGCCGAGGGGTTACAGCAGACGACGTCGTAGCCCTAGCCCTAGAGGCCGCTATGGAGGAGGCCGTGCTAGGGATCTTCCCACCAGTCTTTTGGTTCGCAATCTTCGCCATGACTGCCGGCCTGAGGATTTACGTGGGCCGTTCGGGCAATTTGGTCCCCTCAAGGACATCTACTTGCCTAGGGATTATTATACTGGGGAACCACGTGGCTTTGGATTTGTTCAGTTTGTAGACCCTGCTGATGCTGCAGATGCCAAGTACCATATGGATGGGCAAATTCTTCTTGGGCGGGAATTGACAGTTGTATTTGCTGAGGAGAATAGGAAGAAACCCTCGGAAATGAGGGCAAGAGACCGGGGTCGGTCATATGACAGCAGGCAGAGCATTTATTCTCGTTCACCACGCTATGGTCGAACCTACTCTCGAAGTCCAGGTTATTATTCACCCTCCCCTAGGAGAAGGCGGTACTCAAGGTCGATTTCACCAAGAGGTAGGAGGTACCGGGAGCGATCGTACTCAAGGTCTCCCTATGGTTCAAGGAGCCGTAGCCGAAGTCAGAGCTATAGCAGGAGCCGCAGTCGTAGCCTGGACTACTCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

269

Amino Acids

31.37

Weight (kDa)

11.3

Isoelectric Point (pI)

97.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	98 - 167	3.3e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	232
Acc65I	GGTACC	1 cut(s)	702
AccB1I	GGYRCC	1 cut(s)	702
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	5 cut(s)	206, 253, 493, 667, 778
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	480
AcvI	CACGTG	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	4 cut(s)	464, 671, 704, 719
AfiI	CCNNNNNNNGG	6 cut(s)	142, 212, 274, 328, 611, 657
AgsI	TTSAA	3 cut(s)	47, 100, 741
AjnI	CCWGG	2 cut(s)	634, 789
AluBI	AGCT	3 cut(s)	119, 186, 765
AluI	AGCT	3 cut(s)	119, 186, 765
Alw26I	GTCTC	2 cut(s)	549, 732
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	6 cut(s)	62, 144, 250, 265, 323, 341
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	480
Asp718I	GGTACC	1 cut(s)	702
AspA2I	CCTAGG	2 cut(s)	383, 656
AspS9I	GGNCC	3 cut(s)	145, 341, 359
AsuC2I	CCSGG	2 cut(s)	560, 707
AsuHPI	GGTGA	5 cut(s)	130, 195, 594, 639, 678
AsuII	TTCGAA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	359
AvrII	CCTAGG	2 cut(s)	383, 656
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	702
BbrPI	CACGTG	1 cut(s)	410
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	2 cut(s)	73, 467
BceAI	ACGGC	4 cut(s)	159, 252, 328, 732
BciT130I	CCWGG	2 cut(s)	636, 791
BcnI	CCSGG	2 cut(s)	560, 707
BcoDI	GTCTC	2 cut(s)	549, 732
BfaI	CTAG	6 cut(s)	240, 246, 273, 384, 657, 805
BfmI	CTRYAG	4 cut(s)	58, 187, 450, 766
BglI	GCCNNNNNGGC	2 cut(s)	249, 349
BisI	GCNGC	3 cut(s)	253, 450, 778
BlnI	CCTAGG	2 cut(s)	383, 656
BlsI	GCNGC	3 cut(s)	254, 451, 779
Bme1390I	CCNGG	4 cut(s)	560, 636, 707, 791
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	3 cut(s)	145, 341, 359
BmiI	GGNNCC	5 cut(s)	361, 405, 704, 746, 776
BmrFI	CCNGG	4 cut(s)	560, 636, 707, 791
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	436, 445
BmuI	ACTGGG	1 cut(s)	408
BoxI	GACNNNNGTC	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	129
BpuEI	CTTGAG	3 cut(s)	350, 658, 706
BpuMI	CCSGG	2 cut(s)	560, 707
BsaAI	YACGTR	2 cut(s)	338, 410
BsaHI	GRCGYC	1 cut(s)	229
BsaI	GGTCTC	2 cut(s)	549, 732
BsaJI	CCNNGG	6 cut(s)	141, 209, 383, 537, 559, 656
BsaXI	ACNNNNNCTCC	4 cut(s)	701, 731, 766, 796
Bsc4I	CCNNNNNNNGG	6 cut(s)	142, 212, 274, 328, 611, 657
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	288, 403
Bse21I	CCTNAGG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	636, 791
BseDI	CCNNGG	6 cut(s)	141, 209, 383, 537, 559, 656
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	6 cut(s)	142, 212, 274, 328, 611, 657
BseMII	CTCAG	2 cut(s)	318, 507
BseNI	ACTGG	2 cut(s)	288, 403
BseRI	GAGGAG	2 cut(s)	276, 533
BseXI	GCAGC	1 cut(s)	436
Bsh1285I	CGRYCG	1 cut(s)	716
BshFI	GGCC	6 cut(s)	64, 146, 252, 267, 325, 343
BshNI	GGYRCC	1 cut(s)	702
BsiEI	CGRYCG	1 cut(s)	716
BsiSI	CCGG	3 cut(s)	322, 559, 706
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	6 cut(s)	142, 212, 274, 328, 611, 657
BsmAI	GTCTC	2 cut(s)	549, 732
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	6 cut(s)	64, 146, 252, 267, 325, 343
Bso31I	GGTCTC	2 cut(s)	549, 732
Bsp119I	TTCGAA	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	277, 713
BspACI	CCGC	5 cut(s)	206, 253, 493, 667, 778
BspANI	GGCC	6 cut(s)	64, 146, 252, 267, 325, 343
BspCNI	CTCAG	2 cut(s)	319, 508
BspLI	GGNNCC	5 cut(s)	361, 405, 704, 746, 776
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	702
BspTNI	GGTCTC	2 cut(s)	549, 732
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	288, 403
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	6 cut(s)	141, 209, 383, 537, 559, 656
BssMI	GATC	2 cut(s)	277, 713
BssNI	GRCGYC	1 cut(s)	229
BssT1I	CCWWGG	2 cut(s)	383, 656
Bst2UI	CCWGG	2 cut(s)	636, 791
Bst4CI	ACNGT	3 cut(s)	161, 191, 505
BstACI	GRCGYC	1 cut(s)	229
BstBAI	YACGTR	2 cut(s)	338, 410
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	323, 581
BstDEI	CTNAG	2 cut(s)	327, 516
BstDSI	CCRYGG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	655
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	280, 716
BstMAI	GTCTC	2 cut(s)	549, 732
BstMBI	GATC	2 cut(s)	277, 713
BstMCI	CGRYCG	1 cut(s)	716
BstMWI	GCNNNNNNNGC	9 cut(s)	249, 309, 318, 349, 449, 455, 585, 777, 786
BstNI	CCWGG	2 cut(s)	636, 791
BstPAI	GACNNNNGTC	1 cut(s)	561
BstSCI	CCNGG	4 cut(s)	558, 634, 705, 789
BstSFI	CTRYAG	4 cut(s)	58, 187, 450, 766
BstV1I	GCAGC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	2 cut(s)	295, 473
BstYI	RGATCY	1 cut(s)	277
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	6 cut(s)	64, 146, 252, 267, 325, 343
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	323, 581
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	3 cut(s)	145, 341, 359
Csp6I	GTAC	4 cut(s)	463, 670, 703, 718
CviAII	CATG	2 cut(s)	28, 314
CviQI	GTAC	4 cut(s)	463, 670, 703, 718
DdeI	CTNAG	2 cut(s)	327, 516
DpnI	GATC	2 cut(s)	279, 715
DpnII	GATC	2 cut(s)	277, 713
Eco130I	CCWWGG	2 cut(s)	383, 656
Eco31I	GGTCTC	2 cut(s)	549, 732
Eco47I	GGWCC	1 cut(s)	359
Eco72I	CACGTG	1 cut(s)	410
Eco81I	CCTNAGG	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	634, 789
EcoT14I	CCWWGG	2 cut(s)	383, 656
ErhI	CCWWGG	2 cut(s)	383, 656
FaeI	CATG	2 cut(s)	31, 317
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	2 cut(s)	27, 313
FauI	CCCGC	1 cut(s)	486
FauNDI	CATATG	2 cut(s)	468, 571
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	253, 450, 778
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	253, 450, 778
FspBI	CTAG	6 cut(s)	240, 246, 273, 384, 657, 805
GluI	GCNGC	3 cut(s)	253, 450, 778
HaeIII	GGCC	6 cut(s)	64, 146, 252, 267, 325, 343
HapII	CCGG	3 cut(s)	322, 559, 706
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	31, 317
HpaII	CCGG	3 cut(s)	322, 559, 706
HphI	GGTGA	5 cut(s)	130, 195, 594, 639, 678
Hpy166II	GTNNAC	2 cut(s)	436, 602
Hpy188I	TCNGA	2 cut(s)	541, 762
Hpy188III	TCNNGA	1 cut(s)	627
Hpy8I	GTNNAC	2 cut(s)	436, 602
Hpy99I	CGWCG	2 cut(s)	231, 234
HpyAV	CCTTC	2 cut(s)	210, 657
HpyCH4III	ACNGT	3 cut(s)	161, 191, 505
HpyCH4IV	ACGT	3 cut(s)	229, 337, 409
HpyCH4V	TGCA	2 cut(s)	31, 452
HpyF10VI	GCNNNNNNNGC	9 cut(s)	249, 309, 318, 349, 449, 455, 585, 777, 786
HpyF3I	CTNAG	2 cut(s)	327, 516
HpySE526I	ACGT	3 cut(s)	229, 337, 409
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	31, 317
KpnI	GGTACC	1 cut(s)	706
KroI	GCCGGC	1 cut(s)	321
KroNI	GCCGGC	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	277, 713
LmnI	GCTCC	3 cut(s)	709, 744, 774
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	2 cut(s)	436, 445
MaeI	CTAG	6 cut(s)	240, 246, 273, 384, 657, 805
MaeII	ACGT	3 cut(s)	229, 337, 409
MaeIII	GTNAC	2 cut(s)	191, 215
MalI	GATC	2 cut(s)	279, 715
MboI	GATC	2 cut(s)	277, 713
MboII	GAAGA	5 cut(s)	180, 272, 299, 476, 541
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	4 cut(s)	20, 353, 480, 497
MroNI	GCCGGC	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	3 cut(s)	322, 559, 706
MspR9I	CCNGG	4 cut(s)	560, 636, 707, 791
MvaI	CCWGG	2 cut(s)	636, 791
MwoI	GCNNNNNNNGC	9 cut(s)	249, 309, 318, 349, 449, 455, 585, 777, 786
NaeI	GCCGGC	1 cut(s)	323
NciI	CCSGG	2 cut(s)	560, 707
NdeI	CATATG	2 cut(s)	468, 571
NdeII	GATC	2 cut(s)	277, 713
NgoMIV	GCCGGC	1 cut(s)	321
NlaIII	CATG	2 cut(s)	31, 317
NlaIV	GGNNCC	5 cut(s)	361, 405, 704, 746, 776
NmeAIII	GCCGAG	1 cut(s)	234
NspV	TTCGAA	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PdiI	GCCGGC	1 cut(s)	323
PflFI	GACNNNGTC	1 cut(s)	228
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	254, 451, 779
Ple19I	CGATCG	1 cut(s)	716
PmaCI	CACGTG	1 cut(s)	410
PmlI	CACGTG	1 cut(s)	410
Ppu21I	YACGTR	2 cut(s)	338, 410
PshAI	GACNNNNGTC	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	634, 789
PspCI	CACGTG	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	634, 789
PspN4I	GGNNCC	5 cut(s)	361, 405, 704, 746, 776
PspPI	GGNCC	3 cut(s)	145, 341, 359
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	228
PvuI	CGATCG	1 cut(s)	716
RsaI	GTAC	4 cut(s)	464, 671, 704, 719
RsaNI	GTAC	4 cut(s)	463, 670, 703, 718
RseI	CAYNNNNRTG	1 cut(s)	471
SatI	GCNGC	3 cut(s)	253, 450, 778
Sau3AI	GATC	2 cut(s)	277, 713
Sau96I	GGNCC	3 cut(s)	145, 341, 359
ScrFI	CCNGG	4 cut(s)	560, 636, 707, 791
SfaNI	GCATC	2 cut(s)	436, 445
SfcI	CTRYAG	4 cut(s)	58, 187, 450, 766
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	3 cut(s)	365, 673, 721
SmoI	CTYRAG	3 cut(s)	365, 673, 721
Sse9I	AATT	4 cut(s)	20, 353, 480, 497
SsiI	CCGC	5 cut(s)	206, 253, 493, 667, 778
SspMI	CTAG	6 cut(s)	240, 246, 273, 384, 657, 805
StyD4I	CCNGG	4 cut(s)	558, 634, 705, 789
StyI	CCWWGG	2 cut(s)	383, 656
TaaI	ACNGT	3 cut(s)	161, 191, 505
TaiI	ACGT	3 cut(s)	232, 340, 412
TaqI	TCGA	4 cut(s)	129, 616, 628, 680
TaqII	GACCGA	1 cut(s)	555
TasI	AATT	4 cut(s)	20, 353, 480, 497
TauI	GCSGC	2 cut(s)	255, 780
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	16
Tth111I	GACNNNGTC	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	359
XagI	CCTNNNNNAGG	1 cut(s)	655
XapI	RAATTY	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	2 cut(s)	292, 466
XmaJI	CCTAGG	2 cut(s)	383, 656
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	6 cut(s)	240, 246, 273, 384, 657, 805
ZraI	GACGTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.