Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Reverse (-)

91391701 .. 91394232

Gene Structure 2532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG532100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGGGGAAGGAGTTACAGTCCATCACCACCACCAAGGGGATATGGTAGGAGAGGGCGGAGTCCTAGCCCAAGGGGTCGTTATGGTGGTCATAGTAGAGATAGAGATCTTCCTACAAGCCTCCTAGTTCGTAACCTTCGCCATGATTGCAGGCCAGATGATCTTCGCCGTCCATTTGGGCAGTTTGGTCCTCTGAAGGACATTTACCTGCCAAAGGATTATTATTCAGGGCAACCTCGTGGTTTTGGTTTTGTCCAATTTGTTGATCCTACTGATGCTGCGGAGGCTAAATATCAAATGGATGGTCACGTTCTTCTTGGTCGCGAGGTAACTGTTGTATTTGCAGAGGAGAACAGGAAGAAGCCGTCTGATATGAGGCAAAGGGAGGGTCCAAGCTCCAGGGGTAGTGGTCGACATCGTGATCGAAGAGGGTCTCCTCCACGCTCTCCACGATATTCCCGATCTCCACCTCCACGTCATGCAAGATCTCGGCCCCGCAGCCCTTCTTATGATTCCCCTCCCCCAAAAAGAAGGGAATATTCGAGATCTGTCTCACCCCCAGGGAGAAGGTACAGTAGAGAGAGATCATTTTCCCGATCTCCTCCTCAACCATATAATGGCTCAAGGGGCCGCAGTCAGAGTCCAGTTAGGGGTCCAAGCCGGAGCAGAAGCCAGAGTCCAAGGCAAATTGGTAGAAGCTTGAGTGGCAGGCCACAGAGTCCTGATCATGAAGATTACTCAAGGGAACCAAATGGAGACAGGTCTCCTAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006355 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016482 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031326 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0035061 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903312 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

258

Amino Acids

29.41

Weight (kDa)

11.43

Isoelectric Point (pI)

108.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	41 - 110	1.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	412
AccII	CGCG	1 cut(s)	324
AciI	CCGC	4 cut(s)	58, 281, 496, 631
AclWI	GGATC	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	4 cut(s)	38, 214, 617, 650
AjiI	CACGTC	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	398, 559
AluBI	AGCT	2 cut(s)	396, 699
AluI	AGCT	2 cut(s)	396, 699
Alw26I	GTCTC	4 cut(s)	438, 556, 750, 768
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	4 cut(s)	152, 491, 628, 710
ApeKI	GCWGC	2 cut(s)	278, 498
ArsI	GACNNNNNNTTYG	4 cut(s)	289, 321, 373, 405
AspS9I	GGNCC	5 cut(s)	188, 389, 492, 628, 653
AsuHPI	GGTGA	2 cut(s)	18, 546
AvaII	GGWCC	3 cut(s)	188, 389, 653
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
BauI	CACGAG	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	265, 510
BccI	CCATC	2 cut(s)	31, 296
BceAI	ACGGC	2 cut(s)	153, 349
BciT130I	CCWGG	2 cut(s)	400, 561
BclI	TGATCA	1 cut(s)	724
BcoDI	GTCTC	4 cut(s)	438, 556, 750, 768
BfaI	CTAG	3 cut(s)	66, 125, 768
BfuAI	ACCTGC	1 cut(s)	216
BglII	AGATCT	3 cut(s)	106, 485, 545
BisI	GCNGC	3 cut(s)	279, 499, 631
BlsI	GCNGC	3 cut(s)	280, 500, 632
Bme1390I	CCNGG	2 cut(s)	400, 561
Bme18I	GGWCC	3 cut(s)	188, 389, 653
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	5 cut(s)	188, 389, 492, 628, 653
BmiI	GGNNCC	5 cut(s)	390, 494, 629, 654, 747
BmrFI	CCNGG	2 cut(s)	400, 561
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	382
BpuEI	CTTGAG	3 cut(s)	607, 721, 724
BsaBI	GATNNNNATC	1 cut(s)	105
BsaI	GGTCTC	2 cut(s)	438, 768
BsaJI	CCNNGG	6 cut(s)	35, 71, 399, 559, 560, 680
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 214, 617, 650
Bse1I	ACTGG	1 cut(s)	644
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	400, 561
BseDI	CCNNGG	6 cut(s)	35, 71, 399, 559, 560, 680
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	4 cut(s)	38, 214, 617, 650
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	4 cut(s)	362, 426, 591, 594
BseXI	GCAGC	2 cut(s)	265, 510
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	4 cut(s)	154, 493, 630, 712
BsiSI	CCGG	1 cut(s)	661
BslI	CCNNNNNNNGG	4 cut(s)	38, 214, 617, 650
BsmAI	GTCTC	4 cut(s)	438, 556, 750, 768
BsnI	GGCC	4 cut(s)	154, 493, 630, 712
Bso31I	GGTCTC	2 cut(s)	438, 768
Bsp68I	TCGCGA	1 cut(s)	324
BspACI	CCGC	4 cut(s)	58, 281, 496, 631
BspANI	GGCC	4 cut(s)	154, 493, 630, 712
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	5 cut(s)	390, 494, 629, 654, 747
BspMI	ACCTGC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	260
BspTNI	GGTCTC	2 cut(s)	438, 768
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	6 cut(s)	35, 71, 399, 559, 560, 680
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	3 cut(s)	35, 71, 680
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	400, 561
Bst4CI	ACNGT	3 cut(s)	20, 334, 575
Bst6I	CTCTTC	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	152, 710
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	324
BstMAI	GTCTC	4 cut(s)	438, 556, 750, 768
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 284, 627, 705
BstNI	CCWGG	2 cut(s)	400, 561
BstSCI	CCNGG	2 cut(s)	398, 559
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	265, 510
BstX2I	RGATCY	3 cut(s)	106, 485, 545
BstYI	RGATCY	3 cut(s)	106, 485, 545
BsuRI	GGCC	4 cut(s)	154, 493, 630, 712
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	307
BtuMI	TCGCGA	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	152, 710
CciI	TCATGA	1 cut(s)	727
Cfr13I	GGNCC	5 cut(s)	188, 389, 492, 628, 653
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	4 cut(s)	143, 479, 728, 774
CviQI	GTAC	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
EciI	GGCGGA	1 cut(s)	73
Eco130I	CCWWGG	3 cut(s)	35, 71, 680
Eco31I	GGTCTC	2 cut(s)	438, 768
Eco47I	GGWCC	3 cut(s)	188, 389, 653
Eco57I	CTGAAG	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	398, 559
EcoT14I	CCWWGG	3 cut(s)	35, 71, 680
ErhI	CCWWGG	3 cut(s)	35, 71, 680
FaeI	CATG	4 cut(s)	146, 482, 731, 777
FatI	CATG	4 cut(s)	142, 478, 727, 773
FauI	CCCGC	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	724
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	279, 499, 631
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	279, 499, 631
FspBI	CTAG	3 cut(s)	66, 125, 768
GluI	GCNGC	3 cut(s)	279, 499, 631
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	4 cut(s)	154, 493, 630, 712
HapII	CCGG	1 cut(s)	661
Hin1II	CATG	4 cut(s)	146, 482, 731, 777
HincII	GTYRAC	1 cut(s)	413
HindII	GTYRAC	1 cut(s)	413
HindIII	AAGCTT	1 cut(s)	697
HinfI	GANTC	5 cut(s)	61, 512, 640, 676, 718
HpaII	CCGG	1 cut(s)	661
HphI	GGTGA	2 cut(s)	18, 546
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	195, 370, 639
Hpy188III	TCNNGA	7 cut(s)	323, 419, 459, 543, 594, 722, 728
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	6 cut(s)	3, 146, 190, 513, 525, 561
HpyCH4III	ACNGT	3 cut(s)	20, 334, 575
HpyCH4IV	ACGT	2 cut(s)	309, 475
HpyCH4V	TGCA	3 cut(s)	150, 344, 482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 284, 627, 705
HpySE526I	ACGT	2 cut(s)	309, 475
Hsp92II	CATG	4 cut(s)	146, 482, 731, 777
Ksp22I	TGATCA	1 cut(s)	724
LmnI	GCTCC	2 cut(s)	401, 663
Lsp1109I	GCAGC	2 cut(s)	265, 510
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	3 cut(s)	66, 125, 768
MaeII	ACGT	2 cut(s)	309, 475
MaeIII	GTNAC	4 cut(s)	14, 131, 305, 328
MboII	GAAGA	6 cut(s)	101, 155, 305, 370, 438, 743
MflI	RGATCY	3 cut(s)	106, 485, 545
MluCI	AATT	2 cut(s)	257, 687
MlyI	GAGTC	4 cut(s)	70, 649, 685, 727
MspI	CCGG	1 cut(s)	661
MspR9I	CCNGG	2 cut(s)	400, 561
MvaI	CCWGG	2 cut(s)	400, 561
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	147, 284, 627, 705
NlaIII	CATG	4 cut(s)	146, 482, 731, 777
NlaIV	GGNNCC	5 cut(s)	390, 494, 629, 654, 747
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	305
NruI	TCGCGA	1 cut(s)	324
PagI	TCATGA	1 cut(s)	727
PasI	CCCWGGG	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	2 cut(s)	448, 457
PfeI	GAWTC	1 cut(s)	512
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	3 cut(s)	280, 500, 632
PleI	GAGTC	4 cut(s)	69, 648, 684, 726
PpsI	GAGTC	4 cut(s)	69, 648, 684, 726
Psp6I	CCWGG	2 cut(s)	398, 559
PspGI	CCWGG	2 cut(s)	398, 559
PspN4I	GGNNCC	5 cut(s)	390, 494, 629, 654, 747
PspPI	GGNCC	5 cut(s)	188, 389, 492, 628, 653
PsuI	RGATCY	3 cut(s)	106, 485, 545
RruI	TCGCGA	1 cut(s)	324
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SalI	GTCGAC	1 cut(s)	411
SatI	GCNGC	3 cut(s)	279, 499, 631
Sau96I	GGNCC	5 cut(s)	188, 389, 492, 628, 653
SchI	GAGTC	4 cut(s)	70, 649, 685, 727
ScrFI	CCNGG	2 cut(s)	400, 561
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	3 cut(s)	188, 389, 653
SmlI	CTYRAG	3 cut(s)	622, 700, 739
SmoI	CTYRAG	3 cut(s)	622, 700, 739
Sse9I	AATT	2 cut(s)	257, 687
SsiI	CCGC	4 cut(s)	58, 281, 496, 631
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	3 cut(s)	66, 125, 768
StyD4I	CCNGG	2 cut(s)	398, 559
StyI	CCWWGG	3 cut(s)	35, 71, 680
TaaI	ACNGT	3 cut(s)	20, 334, 575
TaiI	ACGT	2 cut(s)	312, 478
TaqI	TCGA	3 cut(s)	412, 424, 542
TasI	AATT	2 cut(s)	257, 687
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	1 cut(s)	512
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	278, 498
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	744
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	3 cut(s)	188, 389, 653
XagI	CCTNNNNNAGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	412
XspI	CTAG	3 cut(s)	66, 125, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.