AT3G12150

Abhydrolase domain containing 18

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013448
Physical Location & Seq
Reverse (-)
3876339 .. 3879068
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12150.1

Sequence Viewer

Length: 1092 bp
ATGAGAACAATGGTGACGACCAAATTGGGAATGCTCCATTATGTAATTGACCATATATATGGAGCGTTTATGCACCGCACCAAGATGACCCCACCCTTCTTCTCTCGAGGTTGGGGTGGTCCCAATCTCGAATTGCTCGAGCGTATGGTTCAACGCCTCTTCCCTCTTGAGGTTCAAGGTCAGAATTGGCCACCGCCTCTGGTTCGTCCAGTCTGGAGAACTGTTTGGGAGACAAAGACCGCTACTTTGAGAGAAGGTGTTTTCCAGACTCCTTGTGCCGATGAGCTTACCGCTGCTTTGCCTCCGGAGTCTCGCACAGCCAGGGTTGCTTGGCTTGTCCCCAAAAACGTTCCTCCCCAAAAGATGGCTTGTGTGGTTCATCTTGCAGGCACAGGTGATCATACATATGACCGAAGATTGCGTTTGGGTGGACCGTTGGTGAAACAAAACATTGCAACAATGGTGTTGGAAAGCCCTTTCTATGGCCAAAGGCGTCCCTTTCTTCAATGCGGTGCGAGACTCCTCTGTGTTAGTGATCTACTTTTGCTAGGGAGGGCAACAATCGAAGAGTCCCGCAGTCTTATTCACTGGCTAGACACTGAGGAAGGCTTTGGAAAGATGGGTGTTTGTGGGCTAAGTATGGGAGGAGTACATGCTTCGATGGTTGGATCGCTTCATCCAACACCAGTTGCAACACTTCCATTCCTATCTCCGCACTCTGCTGTTGTTGCATTCTGCGAAGGAATATTAAAGTATGGGACTGCTTGGGAGGCACTGAGGGAGGAACTTGCAGCACAGAAGATCACAATGACTCTTGATGAAGTGAGAGAGCGGATGCGGAATGTTCTCTCCCTCACAGACGTCACTCGCTTCCCTATTCCCAAAAACCCTGATGCTGTTATCTTTGTTGCTGCAACTGATGATGGATACATACCAAAACACTCAGTGTTGGAGCTTCAAAAGGCGTGGCCTGGTTCAGAAGTGAGATGGGTCACAGGTGGACACGTGTCTTCCTTTATACTTCACAATGATGAGTTTCGCAGAGCAATCGTGGACGGTCTCGATAGATTAGACTGGAAGGAGTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2048

Protein Analysis

363

Amino Acids

40.78

Weight (kDa)

8.51

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABHD18 PF09752 32 - 264 8.1e-96 Alpha/beta hydrolase domain containing 18
ABHD18 PF09752 264 - 356 1.1e-34 Alpha/beta hydrolase domain containing 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12150
fragaria_vesca FvH4_6g22800
malus_domestica MD12G1062300.v1.1
prunus_persica Prupe.7G072500_v2.0.a1 Prupe.7G072500_v2.0.a1
pyrus_communis pycom12g05500 pycom14g05050
rosa_chinensis RchiOBHm_Chr3g0480421
rosa_laevigata RLG00000023483
rosa_multiflora Rmu_sc0002205.1_g000024
rosa_roxburghii Rroxscaffold_6G00401370
rosa_rugosa Rorug03G0183800 Rorug03G0183900
rosa_samantha Rh3AG235300 Rh3BG268200 Rh3CG265300 Rh3DG261200
rosa_wichuraiana Rw3G021120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 864
AccB7I CCANNNNNTGG 1 cut(s) 364
AccBSI CCGCTC 1 cut(s) 832
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 9 cut(s) 76, 194, 240, 291, 510, 574, 713, 832, 838
AclI AACGTT 1 cut(s) 348
AclWI GGATC 1 cut(s) 676
AcoI YGGCCR 2 cut(s) 188, 484
AcvI CACGTG 1 cut(s) 1006
AcyI GRCGYC 2 cut(s) 493, 861
AdeI CACNNNGTG 1 cut(s) 946
AfaI GTAC 1 cut(s) 651
AfiI CCNNNNNNNGG 3 cut(s) 169, 364, 482
AflIII ACRYGT 2 cut(s) 1003, 1005
AgsI TTSAA 4 cut(s) 152, 176, 506, 959
AjnI CCWGG 2 cut(s) 320, 970
AluBI AGCT 2 cut(s) 286, 955
AluI AGCT 2 cut(s) 286, 955
Alw26I GTCTC 4 cut(s) 224, 315, 511, 1064
AlwI GGATC 1 cut(s) 676
Ama87I CYCGRG 2 cut(s) 105, 137
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 3 cut(s) 188, 484, 968
ApeKI GCWGC 3 cut(s) 293, 791, 911
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
AspS9I GGNCC 2 cut(s) 119, 431
AsuHPI GGTGA 3 cut(s) 25, 407, 451
AvaI CYCGRG 2 cut(s) 105, 137
AvaII GGWCC 2 cut(s) 119, 431
BalI TGGCCA 2 cut(s) 190, 486
BbrPI CACGTG 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 1002
BbvI GCAGC 3 cut(s) 280, 803, 898
BccI CCATC 5 cut(s) 358, 613, 655, 917, 981
BcgI CGANNNNNNTGC 2 cut(s) 1030, 1064
BciT130I CCWGG 2 cut(s) 322, 972
BciVI GTATCC 1 cut(s) 920
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 4 cut(s) 224, 315, 511, 1064
BfaI CTAG 2 cut(s) 548, 593
BfuI GTATCC 1 cut(s) 920
BisI GCNGC 3 cut(s) 294, 792, 912
BlsI GCNGC 3 cut(s) 295, 793, 913
Bme1390I CCNGG 2 cut(s) 322, 972
Bme18I GGWCC 2 cut(s) 119, 431
BmeT110I CYCGRG 2 cut(s) 105, 137
BmgT120I GGNCC 2 cut(s) 119, 431
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 322, 972
BmsI GCATC 2 cut(s) 825, 883
BoxI GACNNNNGTC 1 cut(s) 1006
BpiI GAAGAC 1 cut(s) 1002
BpmI CTGGAG 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 1006
BsaHI GRCGYC 2 cut(s) 493, 861
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 1 cut(s) 321
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 1 cut(s) 1073
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 364, 482
Bse1I ACTGG 4 cut(s) 209, 593, 686, 1079
Bse3DI GCAATG 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 2 cut(s) 322, 972
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 2 cut(s) 676, 840
BseLI CCNNNNNNNGG 3 cut(s) 169, 364, 482
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 3 cut(s) 591, 767, 957
BseNI ACTGG 4 cut(s) 209, 593, 686, 1079
BseRI GAGGAG 2 cut(s) 512, 660
BseXI GCAGC 3 cut(s) 280, 803, 898
BshFI GGCC 3 cut(s) 190, 486, 970
BsiHKCI CYCGRG 2 cut(s) 105, 137
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 5 cut(s) 105, 323, 480, 556, 772
BslI CCNNNNNNNGG 3 cut(s) 169, 364, 482
BsmAI GTCTC 4 cut(s) 224, 315, 511, 1064
BsmFI GGGAC 5 cut(s) 105, 323, 480, 556, 772
BsmI GAATGC 2 cut(s) 36, 731
BsnI GGCC 3 cut(s) 190, 486, 970
Bso31I GGTCTC 1 cut(s) 1064
BsoBI CYCGRG 2 cut(s) 105, 137
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 4 cut(s) 397, 535, 668, 801
BspACI CCGC 9 cut(s) 76, 194, 240, 291, 510, 574, 713, 832, 838
BspANI GGCC 3 cut(s) 190, 486, 970
BspCNI CTCAG 3 cut(s) 592, 768, 956
BspEI TCCGGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 1064
BsrBI CCGCTC 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 4 cut(s) 209, 593, 686, 1079
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 4 cut(s) 397, 535, 668, 801
BssNI GRCGYC 2 cut(s) 493, 861
Bst2UI CCWGG 2 cut(s) 322, 972
Bst4CI ACNGT 3 cut(s) 223, 435, 1058
Bst6I CTCTTC 2 cut(s) 164, 561
BstACI GRCGYC 2 cut(s) 493, 861
BstBAI YACGTR 1 cut(s) 1006
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 4 cut(s) 600, 635, 776, 943
BstF5I GGATG 2 cut(s) 676, 840
BstKTI GATC 4 cut(s) 400, 538, 671, 804
BstMAI GTCTC 4 cut(s) 224, 315, 511, 1064
BstMBI GATC 4 cut(s) 397, 535, 668, 801
BstMWI GCNNNNNNNGC 3 cut(s) 326, 728, 770
BstNI CCWGG 2 cut(s) 322, 972
BstNSI RCATGY 1 cut(s) 656
BstPAI GACNNNNGTC 1 cut(s) 1006
BstSCI CCNGG 2 cut(s) 320, 970
BstV1I GCAGC 3 cut(s) 280, 803, 898
BstV2I GAAGAC 1 cut(s) 1002
BstXI CCANNNNNNTGG 1 cut(s) 59
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 3 cut(s) 190, 486, 970
BtsCI GGATG 2 cut(s) 676, 840
BtsIMutI CAGTG 4 cut(s) 586, 597, 773, 951
Cac8I GCNNGC 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 119, 431
CseI GACGC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 650
CspCI CAANNNNNGTGG 2 cut(s) 947, 982
CviAII CATG 2 cut(s) 653, 1086
CviQI GTAC 1 cut(s) 650
DdeI CTNAG 4 cut(s) 600, 635, 776, 943
DpnI GATC 4 cut(s) 399, 537, 670, 803
DpnII GATC 4 cut(s) 397, 535, 668, 801
DraIII CACNNNGTG 1 cut(s) 946
EaeI YGGCCR 2 cut(s) 188, 484
Eam1104I CTCTTC 2 cut(s) 164, 561
EarI CTCTTC 2 cut(s) 164, 561
Eco31I GGTCTC 1 cut(s) 1064
Eco47I GGWCC 2 cut(s) 119, 431
Eco72I CACGTG 1 cut(s) 1006
Eco88I CYCGRG 2 cut(s) 105, 137
EcoRII CCWGG 2 cut(s) 320, 970
FaeI CATG 2 cut(s) 656, 1089
FaqI GGGAC 5 cut(s) 105, 323, 480, 556, 772
FatI CATG 2 cut(s) 652, 1085
FauI CCCGC 1 cut(s) 581
FauNDI CATATG 1 cut(s) 406
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 3 cut(s) 294, 792, 912
FokI GGATG 2 cut(s) 663, 847
Fsp4HI GCNGC 3 cut(s) 294, 792, 912
FspBI CTAG 2 cut(s) 548, 593
GluI GCNGC 3 cut(s) 294, 792, 912
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 3 cut(s) 190, 486, 970
HapII CCGG 1 cut(s) 305
HgaI GACGC 1 cut(s) 482
Hin1I GRCGYC 2 cut(s) 493, 861
Hin1II CATG 2 cut(s) 656, 1089
HinfI GANTC 6 cut(s) 268, 308, 519, 569, 811, 1082
HpaII CCGG 1 cut(s) 305
HphI GGTGA 3 cut(s) 25, 407, 451
Hpy166II GTNNAC 3 cut(s) 431, 1001, 1054
Hpy188I TCNGA 2 cut(s) 183, 979
Hpy188III TCNNGA 8 cut(s) 105, 128, 167, 214, 265, 305, 815, 1061
Hpy8I GTNNAC 3 cut(s) 431, 1001, 1054
HpyAV CCTTC 5 cut(s) 106, 248, 599, 734, 1072
HpyCH4III ACNGT 3 cut(s) 223, 435, 1058
HpyCH4IV ACGT 3 cut(s) 348, 861, 1005
HpyCH4V TGCA 7 cut(s) 73, 386, 455, 692, 731, 791, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 728, 770
HpyF3I CTNAG 4 cut(s) 600, 635, 776, 943
HpySE526I ACGT 3 cut(s) 348, 861, 1005
Hsp92I GRCGYC 2 cut(s) 493, 861
Hsp92II CATG 2 cut(s) 656, 1089
Kpn2I TCCGGA 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 4 cut(s) 397, 535, 668, 801
LmnI GCTCC 3 cut(s) 39, 62, 952
Lsp1109I GCAGC 3 cut(s) 280, 803, 898
LweI GCATC 2 cut(s) 825, 883
MaeI CTAG 2 cut(s) 548, 593
MaeII ACGT 3 cut(s) 348, 861, 1005
MaeIII GTNAC 3 cut(s) 13, 862, 991
MalI GATC 4 cut(s) 399, 537, 670, 803
MbiI CCGCTC 1 cut(s) 832
MboI GATC 4 cut(s) 397, 535, 668, 801
MboII GAAGA 7 cut(s) 91, 151, 426, 494, 578, 811, 1002
MlsI TGGCCA 2 cut(s) 190, 486
MluCI AATT 4 cut(s) 23, 45, 131, 184
MluNI TGGCCA 2 cut(s) 190, 486
MlyI GAGTC 6 cut(s) 262, 317, 513, 578, 805, 1091
MmeI TCCRAC 4 cut(s) 447, 646, 704, 930
Mox20I TGGCCA 2 cut(s) 190, 486
MroI TCCGGA 1 cut(s) 304
MscI TGGCCA 2 cut(s) 190, 486
MseI TTAA 1 cut(s) 749
MslI CAYNNNNRTG 4 cut(s) 57, 83, 405, 1029
Msp20I TGGCCA 2 cut(s) 190, 486
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 322, 972
Mva1269I GAATGC 2 cut(s) 36, 731
MvaI CCWGG 2 cut(s) 322, 972
MwoI GCNNNNNNNGC 3 cut(s) 326, 728, 770
NdeI CATATG 1 cut(s) 406
NdeII GATC 4 cut(s) 397, 535, 668, 801
NlaIII CATG 2 cut(s) 656, 1089
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 13, 862, 991
NspI RCATGY 1 cut(s) 656
PaeR7I CTCGAG 2 cut(s) 105, 137
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 2 cut(s) 36, 731
PflMI CCANNNNNTGG 1 cut(s) 364
PkrI GCNGC 3 cut(s) 295, 793, 913
PleI GAGTC 6 cut(s) 262, 316, 513, 577, 805, 1090
PmaCI CACGTG 1 cut(s) 1006
PmlI CACGTG 1 cut(s) 1006
PpsI GAGTC 6 cut(s) 262, 316, 513, 577, 805, 1090
Ppu21I YACGTR 1 cut(s) 1006
PshAI GACNNNNGTC 1 cut(s) 1006
Psp1406I AACGTT 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 320, 970
PspCI CACGTG 1 cut(s) 1006
PspGI CCWGG 2 cut(s) 320, 970
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 119, 431
PspXI VCTCGAGB 1 cut(s) 137
RsaI GTAC 1 cut(s) 651
RsaNI GTAC 1 cut(s) 650
RseI CAYNNNNRTG 4 cut(s) 57, 83, 405, 1029
SaqAI TTAA 1 cut(s) 749
SatI GCNGC 3 cut(s) 294, 792, 912
Sau3AI GATC 4 cut(s) 397, 535, 668, 801
Sau96I GGNCC 2 cut(s) 119, 431
SchI GAGTC 6 cut(s) 262, 317, 513, 578, 805, 1091
ScrFI CCNGG 2 cut(s) 322, 972
SfaNI GCATC 2 cut(s) 825, 883
Sfr274I CTCGAG 2 cut(s) 105, 137
SinI GGWCC 2 cut(s) 119, 431
SlaI CTCGAG 2 cut(s) 105, 137
SmiMI CAYNNNNRTG 4 cut(s) 57, 83, 405, 1029
SmlI CTYRAG 3 cut(s) 105, 137, 167
SmoI CTYRAG 3 cut(s) 105, 137, 167
Sse9I AATT 4 cut(s) 23, 45, 131, 184
SsiI CCGC 9 cut(s) 76, 194, 240, 291, 510, 574, 713, 832, 838
SspI AATATT 1 cut(s) 747
SspMI CTAG 2 cut(s) 548, 593
StyD4I CCNGG 2 cut(s) 320, 970
TaaI ACNGT 3 cut(s) 223, 435, 1058
TaiI ACGT 3 cut(s) 351, 864, 1008
TaqI TCGA 6 cut(s) 106, 129, 138, 564, 659, 1062
TaqII GACCGA 1 cut(s) 426
TasI AATT 4 cut(s) 23, 45, 131, 184
TatI WGTACW 1 cut(s) 649
Tru1I TTAA 1 cut(s) 749
Tru9I TTAA 1 cut(s) 749
TscAI CASTG 4 cut(s) 593, 604, 780, 951
TseFI GTSAC 3 cut(s) 13, 862, 991
TseI GCWGC 3 cut(s) 293, 791, 911
Tsp45I GTSAC 3 cut(s) 13, 862, 991
TspDTI ATGAA 3 cut(s) 368, 665, 834
TspRI CASTG 4 cut(s) 593, 604, 780, 951
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 119, 431
XceI RCATGY 1 cut(s) 656
XhoI CTCGAG 2 cut(s) 105, 137
XspI CTAG 2 cut(s) 548, 593
ZraI GACGTC 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.