Prupe.7G072500_v2.0.a1

protein C4orf29 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013448
Physical Location & Seq
Forward (+)
11008436 .. 11011460
3025 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G072500.1

Sequence Viewer

Length: 1083 bp
ATGGTGACAGTGAATCTTGGAATGCTCCACTATGTATTGGACCATGTATATGGTGCATTCATGCACAGAACAAAGATAAGCCCACAATTTTTTTCAAGAGGGTGGGGAGGTACAAAGCTTGAGTTGCTTGAGAGAATGATCAAGCAGCTGTTCCCAGAAGTTGCAGGTCAGAATTGGCCTCCCACTGTTATCCAACCCAATTGGAAAACAGTTTGGGAGAGCCAGACAGCTACTCTTAGAGAAGGGGTTTTCAGGACACCTTGTGATGAGCAGCTTCTTAGTGCATTGCCTCCTGAGAGTCACAGTGCAAGAGTTGCATTTCTCGCCCCAAAATCCGTGCCCCCTCAGAAAATGGCCTGTGTGGTTCATCTTGCAGGAACAGGGGACCATACATTTGAAAGAAGATTGCGTCTTGGTGGACCATTATTGAAGGAAAACATTGCAACCATGGTGCTCGAGAGCCCTTTCTATGGACAAAGACGTCCTGTGATGCAGCATGGGGCAAAACTATTGTGTGTGAGTGACTTGCTTTTGTTAGGAAAGGCAACCATTGAGGAAGCTCGCAGTCTCTTGCATTGGTTAGACTGTGAGGCAGGGTTCGGAAAGATGGGTGTTTGTGGACTTAGTATGGGAGGAGTACATGCTGCAATGGTTGGATCACTGCACCCTACACCTGTTGCAACCCTTCCTTTTCTCTCTCCGCACTCTGCTGTTGTGGCTTTCTGTGAGGGAATATTAAAGCATGCCACTGCTTGGGAGGCACTGAGAGAGGATCTTGCAGTGCAGAAGGCTGCAATGACTCTTGAGGAGGTGAGAGAAAGGATGCGCAATGTTCTGTCCCTCACAGATGTCACGCGCTTTCCGATTCCAAAGAGTCCCAATGCTGTGATATTTGTTTCTGCCACTGATGATGGGTACATTCCAAAACACTCTGTGCTGGAGCTGCAAAAAGCTTGGCCAGGTTCAGAAGTAAGATGGGTCACTGGTGGCCATGTTTCATCTTTCCTTCTCCACAACGATGAGTTCCGCAGGGCCATTGTGGATGGACTTGACAGATTGCAATGGAAGGAGTCTCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2048

Protein Analysis

361

Amino Acids

39.97

Weight (kDa)

8.21

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12150
fragaria_vesca FvH4_6g22800
malus_domestica MD12G1062300.v1.1
prunus_persica Prupe.7G072500_v2.0.a1 Prupe.7G072500_v2.0.a1
pyrus_communis pycom12g05500 pycom14g05050
rosa_chinensis RchiOBHm_Chr3g0480421
rosa_laevigata RLG00000023483
rosa_multiflora Rmu_sc0002205.1_g000024
rosa_roxburghii Rroxscaffold_6G00401370
rosa_rugosa Rorug03G0183800 Rorug03G0183900
rosa_samantha Rh3AG235300 Rh3BG268200 Rh3CG265300 Rh3DG261200
rosa_wichuraiana Rw3G021120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 480
AatII GACGTC 1 cut(s) 484
Acc16I TGCGCA 1 cut(s) 827
Acc36I ACCTGC 1 cut(s) 155
AccB7I CCANNNNNTGG 1 cut(s) 753
AccII CGCG 1 cut(s) 856
AciI CCGC 2 cut(s) 701, 1027
AclWI GGATC 2 cut(s) 664, 780
AcoI YGGCCR 2 cut(s) 956, 988
AcyI GRCGYC 1 cut(s) 481
AdeI CACNNNGTG 2 cut(s) 263, 934
AfaI GTAC 3 cut(s) 112, 639, 917
AfiI CCNNNNNNNGG 2 cut(s) 470, 753
AgsI TTSAA 3 cut(s) 96, 398, 430
AjnI CCWGG 1 cut(s) 958
AluBI AGCT 7 cut(s) 118, 148, 230, 274, 560, 943, 953
AluI AGCT 7 cut(s) 118, 148, 230, 274, 560, 943, 953
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 2 cut(s) 572, 1077
AlwI GGATC 2 cut(s) 664, 780
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 5 cut(s) 176, 354, 956, 988, 1032
ApeKI GCWGC 6 cut(s) 145, 271, 493, 644, 791, 943
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AspLEI GCGC 2 cut(s) 828, 858
AspS9I GGNCC 4 cut(s) 40, 385, 419, 1032
AsuHPI GGTGA 2 cut(s) 16, 823
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 3 cut(s) 40, 385, 419
BaeGI GKGCMC 1 cut(s) 342
BalI TGGCCA 2 cut(s) 958, 990
BanII GRGCYC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 6 cut(s) 157, 283, 505, 631, 778, 930
BccI CCATC 4 cut(s) 601, 905, 969, 1037
BciT130I CCWGG 1 cut(s) 960
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 572, 1077
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 6 cut(s) 146, 272, 494, 645, 792, 944
BlsI GCNGC 6 cut(s) 147, 273, 495, 646, 793, 945
Bme1390I CCNGG 1 cut(s) 960
Bme18I GGWCC 3 cut(s) 40, 385, 419
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 4 cut(s) 40, 385, 419, 1032
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 960
BmsI GCATC 2 cut(s) 480, 813
BpmI CTGGAG 1 cut(s) 959
BpuEI CTTGAG 3 cut(s) 140, 149, 824
BsaHI GRCGYC 1 cut(s) 481
BsaJI CCNNGG 1 cut(s) 447
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 753
Bse1I ACTGG 1 cut(s) 988
Bse3DI GCAATG 6 cut(s) 284, 438, 654, 801, 835, 1067
BseBI CCWGG 1 cut(s) 960
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 828, 1048
BseLI CCNNNNNNNGG 2 cut(s) 470, 753
BseMI GCAATG 6 cut(s) 284, 438, 654, 801, 835, 1067
BseMII CTCAG 3 cut(s) 285, 359, 755
BseNI ACTGG 1 cut(s) 988
BseRI GAGGAG 2 cut(s) 648, 821
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 6 cut(s) 157, 283, 505, 631, 778, 930
BsgI GTGCAG 2 cut(s) 647, 803
Bsh1236I CGCG 1 cut(s) 856
BshFI GGCC 5 cut(s) 178, 356, 958, 990, 1034
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 455
BslFI GGGAC 3 cut(s) 398, 823, 861
BslI CCNNNNNNNGG 2 cut(s) 470, 753
BsmAI GTCTC 2 cut(s) 572, 1077
BsmFI GGGAC 3 cut(s) 398, 823, 861
BsmI GAATGC 2 cut(s) 27, 56
BsnI GGCC 5 cut(s) 178, 356, 958, 990, 1034
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 342, 456, 464
Bsp143I GATC 3 cut(s) 138, 656, 772
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 2 cut(s) 701, 1027
BspANI GGCC 5 cut(s) 178, 356, 958, 990, 1034
BspCNI CTCAG 3 cut(s) 286, 358, 756
BspFNI CGCG 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 386
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 2 cut(s) 664, 780
BsrDI GCAATG 6 cut(s) 284, 438, 654, 801, 835, 1067
BsrI ACTGG 1 cut(s) 988
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 3 cut(s) 138, 656, 772
BssNI GRCGYC 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 5 cut(s) 10, 187, 211, 305, 587
BstACI GRCGYC 1 cut(s) 481
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 562, 744
BstDEI CTNAG 6 cut(s) 236, 278, 294, 345, 623, 764
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 2 cut(s) 828, 1048
BstFNI CGCG 1 cut(s) 856
BstHHI GCGC 2 cut(s) 828, 858
BstKTI GATC 3 cut(s) 141, 659, 775
BstMAI GTCTC 2 cut(s) 572, 1077
BstMBI GATC 3 cut(s) 138, 656, 772
BstMWI GCNNNNNNNGC 6 cut(s) 124, 314, 323, 716, 758, 943
BstNI CCWGG 1 cut(s) 960
BstNSI RCATGY 2 cut(s) 644, 746
BstSCI CCNGG 1 cut(s) 958
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 6 cut(s) 157, 283, 505, 631, 778, 930
BstX2I RGATCY 1 cut(s) 772
BstXI CCANNNNNNTGG 1 cut(s) 50
BstYI RGATCY 1 cut(s) 772
BsuRI GGCC 5 cut(s) 178, 356, 958, 990, 1034
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 2 cut(s) 828, 1048
BtsI GCAGTG 3 cut(s) 659, 747, 786
BtsIMutI CAGTG 9 cut(s) 15, 183, 310, 659, 747, 761, 786, 903, 981
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 562, 744
CfoI GCGC 2 cut(s) 828, 858
Cfr13I GGNCC 4 cut(s) 40, 385, 419, 1032
CseI GACGC 1 cut(s) 398
Csp6I GTAC 3 cut(s) 111, 638, 916
CviAII CATG 7 cut(s) 44, 61, 448, 497, 641, 743, 992
CviQI GTAC 3 cut(s) 111, 638, 916
DdeI CTNAG 6 cut(s) 236, 278, 294, 345, 623, 764
DpnI GATC 3 cut(s) 140, 658, 774
DpnII GATC 3 cut(s) 138, 656, 772
DraIII CACNNNGTG 2 cut(s) 263, 934
DrdI GACNNNNNNGTC 1 cut(s) 480
DseDI GACNNNNNNGTC 1 cut(s) 480
EaeI YGGCCR 2 cut(s) 956, 988
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 464
Eco47I GGWCC 3 cut(s) 40, 385, 419
Eco88I CYCGRG 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 958
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 7 cut(s) 47, 64, 451, 500, 644, 746, 995
FaqI GGGAC 3 cut(s) 398, 823, 861
FatI CATG 7 cut(s) 43, 60, 447, 496, 640, 742, 991
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 6 cut(s) 146, 272, 494, 645, 792, 944
FokI GGATG 2 cut(s) 835, 1055
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 6 cut(s) 146, 272, 494, 645, 792, 944
FspI TGCGCA 1 cut(s) 827
GlaI GCGC 2 cut(s) 827, 857
GluI GCNGC 6 cut(s) 146, 272, 494, 645, 792, 944
GsuI CTGGAG 1 cut(s) 959
HaeIII GGCC 5 cut(s) 178, 356, 958, 990, 1034
HgaI GACGC 1 cut(s) 398
HhaI GCGC 2 cut(s) 828, 858
Hin1I GRCGYC 1 cut(s) 481
Hin1II CATG 7 cut(s) 47, 64, 451, 500, 644, 746, 995
Hin6I GCGC 2 cut(s) 826, 856
HinP1I GCGC 2 cut(s) 826, 856
HindIII AAGCTT 2 cut(s) 116, 951
HinfI GANTC 6 cut(s) 13, 298, 799, 865, 874, 1070
HphI GGTGA 2 cut(s) 16, 823
Hpy166II GTNNAC 2 cut(s) 419, 620
Hpy188I TCNGA 5 cut(s) 171, 348, 602, 864, 967
Hpy188III TCNNGA 5 cut(s) 96, 253, 293, 457, 803
Hpy8I GTNNAC 2 cut(s) 419, 620
HpyAV CCTTC 6 cut(s) 236, 424, 695, 781, 1016, 1060
HpyCH4III ACNGT 5 cut(s) 10, 187, 211, 305, 587
HpyCH4IV ACGT 1 cut(s) 481
HpyF10VI GCNNNNNNNGC 6 cut(s) 124, 314, 323, 716, 758, 943
HpyF3I CTNAG 6 cut(s) 236, 278, 294, 345, 623, 764
HpySE526I ACGT 1 cut(s) 481
Hsp92I GRCGYC 1 cut(s) 481
Hsp92II CATG 7 cut(s) 47, 64, 451, 500, 644, 746, 995
HspAI GCGC 2 cut(s) 826, 856
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 138, 656, 772
LmnI GCTCC 2 cut(s) 30, 940
Lsp1109I GCAGC 6 cut(s) 157, 283, 505, 631, 778, 930
LweI GCATC 2 cut(s) 480, 813
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 5 cut(s) 4, 299, 521, 850, 979
MalI GATC 3 cut(s) 140, 658, 774
MboI GATC 3 cut(s) 138, 656, 772
MboII GAAGA 1 cut(s) 414
MfeI CAATTG 1 cut(s) 199
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 3 cut(s) 342, 456, 464
MlsI TGGCCA 2 cut(s) 958, 990
MluCI AATT 3 cut(s) 86, 172, 199
MluNI TGGCCA 2 cut(s) 958, 990
MlyI GAGTC 4 cut(s) 307, 793, 883, 1079
MmeI TCCRAC 2 cut(s) 217, 634
Mox20I TGGCCA 2 cut(s) 958, 990
MscI TGGCCA 2 cut(s) 958, 990
MseI TTAA 1 cut(s) 737
MslI CAYNNNNRTG 2 cut(s) 48, 1017
Msp20I TGGCCA 2 cut(s) 958, 990
MspA1I CMGCKG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 960
MunI CAATTG 1 cut(s) 199
Mva1269I GAATGC 2 cut(s) 27, 56
MvaI CCWGG 1 cut(s) 960
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 6 cut(s) 124, 314, 323, 716, 758, 943
NcoI CCATGG 1 cut(s) 447
NdeII GATC 3 cut(s) 138, 656, 772
NlaIII CATG 7 cut(s) 47, 64, 451, 500, 644, 746, 995
NlaIV GGNNCC 1 cut(s) 386
NmuCI GTSAC 5 cut(s) 4, 299, 521, 850, 979
NsbI TGCGCA 1 cut(s) 827
NspI RCATGY 2 cut(s) 644, 746
PaeI GCATGC 1 cut(s) 746
PaeR7I CTCGAG 1 cut(s) 455
PcsI WCGNNNNNNNCGW 1 cut(s) 860
PctI GAATGC 2 cut(s) 27, 56
PfeI GAWTC 2 cut(s) 13, 865
PflMI CCANNNNNTGG 1 cut(s) 753
PkrI GCNGC 6 cut(s) 147, 273, 495, 646, 793, 945
PleI GAGTC 4 cut(s) 306, 793, 882, 1078
PpsI GAGTC 4 cut(s) 306, 793, 882, 1078
Psp6I CCWGG 1 cut(s) 958
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 4 cut(s) 40, 385, 419, 1032
PsuI RGATCY 1 cut(s) 772
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 3 cut(s) 112, 639, 917
RsaNI GTAC 3 cut(s) 111, 638, 916
RseI CAYNNNNRTG 2 cut(s) 48, 1017
SaqAI TTAA 1 cut(s) 737
SatI GCNGC 6 cut(s) 146, 272, 494, 645, 792, 944
Sau3AI GATC 3 cut(s) 138, 656, 772
Sau96I GGNCC 4 cut(s) 40, 385, 419, 1032
SchI GAGTC 4 cut(s) 307, 793, 883, 1079
ScrFI CCNGG 1 cut(s) 960
SduI GDGCHC 3 cut(s) 342, 456, 464
SfaNI GCATC 2 cut(s) 480, 813
Sfr274I CTCGAG 1 cut(s) 455
SinI GGWCC 3 cut(s) 40, 385, 419
SlaI CTCGAG 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 48, 1017
SmlI CTYRAG 4 cut(s) 119, 128, 455, 803
SmoI CTYRAG 4 cut(s) 119, 128, 455, 803
SphI GCATGC 1 cut(s) 746
Sse9I AATT 3 cut(s) 86, 172, 199
SsiI CCGC 2 cut(s) 701, 1027
SspI AATATT 1 cut(s) 735
StyD4I CCNGG 1 cut(s) 958
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 5 cut(s) 10, 187, 211, 305, 587
TaiI ACGT 1 cut(s) 484
TaqI TCGA 1 cut(s) 456
TasI AATT 3 cut(s) 86, 172, 199
TatI WGTACW 1 cut(s) 637
TfiI GAWTC 2 cut(s) 13, 865
Tru1I TTAA 1 cut(s) 737
Tru9I TTAA 1 cut(s) 737
TscAI CASTG 9 cut(s) 15, 190, 310, 666, 754, 768, 786, 910, 988
TseFI GTSAC 5 cut(s) 4, 299, 521, 850, 979
TseI GCWGC 6 cut(s) 145, 271, 493, 644, 791, 943
Tsp45I GTSAC 5 cut(s) 4, 299, 521, 850, 979
TspDTI ATGAA 3 cut(s) 49, 356, 987
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 9 cut(s) 15, 190, 310, 666, 754, 768, 786, 910, 988
Van91I CCANNNNNTGG 1 cut(s) 753
VpaK11BI GGWCC 3 cut(s) 40, 385, 419
XceI RCATGY 2 cut(s) 644, 746
XhoI CTCGAG 1 cut(s) 455
ZraI GACGTC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.