FvH4_6g22800

protein C4orf29 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013448
Physical Location & Seq
Reverse (-)
16493165 .. 16496477
3313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22800.t1

Sequence Viewer

Length: 1068 bp
ATGGCAACGAAGCTGGGAATGCTCCATTATGTATTGGACCATGTTTATGGTGCATTCATGCACAGAACCAAGATCAGCCCTCAATTTTTTTCAAGAGGGTGGGGTGGTAAACAGCTCGAATTGCTGGAGAGGATGATTAATCAGCTGTTTCCAGAAGCTGCAGGGCAGAATTGGCCTCCGGTTTTGGTCCGGCCCACTTGGAAGACTGTTTGGGAGAGCAAGAGTGCTTGTCTTCGAGAAGGGGTGTTCAGGACTCCTTGTGATGAGCAGCTTCTTAGTGCATTGCCTCCTGAGAGTCACACTGCTAGAGTTGCTTTTCTGGTACCGAAATCGGTTCCCCCTCAGAAAATGGCTTGTGTGGTTCATCTTGCAGGGACTGGGGATCATTCATTTGAACGAAGGCTACGACTTGGGGGACCATTATTGAAGGAAAACATTGCAACTATGGTGCTTGAGAGCCCTTTCTACGGACAAAGACGTCCTATGCTACAGCGTGGTGCAAAGCTATTGTGTGTTAGTGACTTGCTTTTATTAGGAAAGGCAACAATTGAAGAAGCCCGCAGTCTCTTGCATTGGTTAGACTCTGAGGAAGGGTTTGGGAAAATGGGTGTTTGTGGACTTAGTATGGGAGGAGTTCATGCTGCAATGGTTGGATCACTGCACCCTACACCTGTTGCAACTCTTCCTTTTCTTTCTCCACACTCTGCTACTGTGGCATTCTGTGAGGGAATATTACAGCATGCTACTGCATGGGAAGCACTGAGAAAAGATCTTGCAGTAATGACTCTTGAGGAGGTCAGAGAACGAATGCGCAATGTTTTCTCTCTCACAGATGTGACACGCTTTCCAATTCCAAAAAACCCCGATGCTGTGATCTTTGTCTCTGCTACTGATGATGGGTACATCCCAAAACACTCTGTGCTAGAGCTTCAGAAAGCTTGGCCCGGTTCAGAAGTAAGATGGGTCACTGGTGGACATGTCTCATCTTTCCTTCTCCACAATGGTGAGTTTCGCAGGGCCATTGTTGATGGACTTGGCAGATTAGAATGGAAAGAGTCTCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2048

Protein Analysis

356

Amino Acids

39.5

Weight (kDa)

8.71

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABHD18 PF09752 28 - 258 8.6e-92 Alpha/beta hydrolase domain containing 18
ABHD18 PF09752 261 - 346 4.5e-32 Alpha/beta hydrolase domain containing 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12150
fragaria_vesca FvH4_6g22800
malus_domestica MD12G1062300.v1.1
prunus_persica Prupe.7G072500_v2.0.a1 Prupe.7G072500_v2.0.a1
pyrus_communis pycom12g05500 pycom14g05050
rosa_chinensis RchiOBHm_Chr3g0480421
rosa_laevigata RLG00000023483
rosa_multiflora Rmu_sc0002205.1_g000024
rosa_roxburghii Rroxscaffold_6G00401370
rosa_rugosa Rorug03G0183800 Rorug03G0183900
rosa_samantha Rh3AG235300 Rh3BG268200 Rh3CG265300 Rh3DG261200
rosa_wichuraiana Rw3G021120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 477
AatII GACGTC 1 cut(s) 481
Acc16I TGCGCA 1 cut(s) 812
Acc65I GGTACC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 322
AciI CCGC 1 cut(s) 559
AclWI GGATC 2 cut(s) 390, 661
AcuI CTGAAG 1 cut(s) 914
AcyI GRCGYC 1 cut(s) 478
AdeI CACNNNGTG 1 cut(s) 919
AfaI GTAC 2 cut(s) 324, 902
AfiI CCNNNNNNNGG 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 976
AgsI TTSAA 4 cut(s) 93, 395, 427, 551
AleI CACNNNNGTG 2 cut(s) 833, 1002
AluBI AGCT 8 cut(s) 13, 115, 145, 158, 271, 505, 928, 938
AluI AGCT 8 cut(s) 13, 115, 145, 158, 271, 505, 928, 938
Alw26I GTCTC 4 cut(s) 569, 886, 985, 1062
AlwI GGATC 2 cut(s) 390, 661
AlwNI CAGNNNCTG 2 cut(s) 158, 377
AoxI GGCC 4 cut(s) 173, 191, 941, 1017
ApeKI GCWGC 3 cut(s) 158, 268, 641
AseI ATTAAT 1 cut(s) 138
Asp718I GGTACC 1 cut(s) 322
AspLEI GCGC 1 cut(s) 813
AspS9I GGNCC 6 cut(s) 37, 187, 192, 416, 942, 1017
AsuC2I CCSGG 1 cut(s) 945
AsuHPI GGTGA 1 cut(s) 1016
AvaII GGWCC 3 cut(s) 37, 187, 416
BanI GGYRCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 461
BbsI GAAGAC 2 cut(s) 209, 224
BbvI GCAGC 3 cut(s) 145, 280, 628
BccI CCATC 3 cut(s) 890, 954, 1022
BcnI CCSGG 1 cut(s) 945
BcoDI GTCTC 4 cut(s) 569, 886, 985, 1062
BfaI CTAG 2 cut(s) 306, 923
BfmI CTRYAG 2 cut(s) 159, 488
BglII AGATCT 1 cut(s) 769
BisI GCNGC 3 cut(s) 159, 269, 642
BlsI GCNGC 3 cut(s) 160, 270, 643
Bme1390I CCNGG 1 cut(s) 945
Bme18I GGWCC 3 cut(s) 37, 187, 416
BmgT120I GGNCC 6 cut(s) 37, 187, 192, 416, 942, 1017
BmiI GGNNCC 3 cut(s) 324, 336, 417
BmrFI CCNGG 1 cut(s) 945
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 856
BmuI ACTGGG 1 cut(s) 387
BpiI GAAGAC 2 cut(s) 209, 224
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 473, 809
BpuMI CCSGG 1 cut(s) 945
BsaHI GRCGYC 1 cut(s) 478
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse1I ACTGG 2 cut(s) 382, 973
Bse3DI GCAATG 4 cut(s) 281, 435, 651, 820
BseGI GGATG 2 cut(s) 138, 903
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMI GCAATG 4 cut(s) 281, 435, 651, 820
BseMII CTCAG 4 cut(s) 282, 356, 576, 752
BseNI ACTGG 2 cut(s) 382, 973
BseRI GAGGAG 2 cut(s) 645, 806
BseXI GCAGC 3 cut(s) 145, 280, 628
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 644
BshFI GGCC 4 cut(s) 175, 193, 943, 1019
BshNI GGYRCC 1 cut(s) 322
BsiSI CCGG 3 cut(s) 179, 190, 945
BslFI GGGAC 2 cut(s) 388, 429
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 4 cut(s) 569, 886, 985, 1062
BsmFI GGGAC 2 cut(s) 388, 429
BsmI GAATGC 4 cut(s) 24, 53, 716, 813
BsnI GGCC 4 cut(s) 175, 193, 943, 1019
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 5 cut(s) 72, 382, 653, 769, 873
BspACI CCGC 1 cut(s) 559
BspANI GGCC 4 cut(s) 175, 193, 943, 1019
BspCNI CTCAG 4 cut(s) 283, 355, 577, 753
BspLI GGNNCC 3 cut(s) 324, 336, 417
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 2 cut(s) 390, 661
BspT107I GGYRCC 1 cut(s) 322
BsrDI GCAATG 4 cut(s) 281, 435, 651, 820
BsrI ACTGG 2 cut(s) 382, 973
BssMI GATC 5 cut(s) 72, 382, 653, 769, 873
BssNI GRCGYC 1 cut(s) 478
Bst4CI ACNGT 2 cut(s) 208, 712
Bst6I CTCTTC 1 cut(s) 687
BstACI GRCGYC 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 559, 741
BstDEI CTNAG 6 cut(s) 275, 291, 342, 585, 620, 761
BstF5I GGATG 2 cut(s) 138, 903
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 5 cut(s) 75, 385, 656, 772, 876
BstMAI GTCTC 4 cut(s) 569, 886, 985, 1062
BstMBI GATC 5 cut(s) 72, 382, 653, 769, 873
BstMWI GCNNNNNNNGC 6 cut(s) 19, 121, 172, 311, 713, 755
BstNSI RCATGY 2 cut(s) 743, 980
BstSCI CCNGG 1 cut(s) 943
BstSFI CTRYAG 2 cut(s) 159, 488
BstV1I GCAGC 3 cut(s) 145, 280, 628
BstV2I GAAGAC 2 cut(s) 209, 224
BstX2I RGATCY 1 cut(s) 769
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 769
BsuRI GGCC 4 cut(s) 175, 193, 943, 1019
BtsCI GGATG 2 cut(s) 138, 903
BtsI GCAGTG 2 cut(s) 300, 656
BtsIMutI CAGTG 4 cut(s) 300, 656, 758, 966
Cac8I GCNNGC 2 cut(s) 559, 741
CaiI CAGNNNCTG 2 cut(s) 158, 377
CfoI GCGC 1 cut(s) 813
Cfr13I GGNCC 6 cut(s) 37, 187, 192, 416, 942, 1017
Csp6I GTAC 2 cut(s) 323, 901
CviAII CATG 6 cut(s) 41, 58, 638, 740, 750, 977
CviQI GTAC 2 cut(s) 323, 901
DdeI CTNAG 6 cut(s) 275, 291, 342, 585, 620, 761
DpnI GATC 5 cut(s) 74, 384, 655, 771, 875
DpnII GATC 5 cut(s) 72, 382, 653, 769, 873
DraIII CACNNNGTG 1 cut(s) 919
DrdI GACNNNNNNGTC 1 cut(s) 477
DseDI GACNNNNNNGTC 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 461
Eco47I GGWCC 3 cut(s) 37, 187, 416
Eco57I CTGAAG 1 cut(s) 914
EcoT38I GRGCYC 1 cut(s) 461
FaeI CATG 6 cut(s) 44, 61, 641, 743, 753, 980
FaqI GGGAC 2 cut(s) 388, 429
FatI CATG 6 cut(s) 40, 57, 637, 739, 749, 976
FauI CCCGC 1 cut(s) 566
Fnu4HI GCNGC 3 cut(s) 159, 269, 642
FokI GGATG 2 cut(s) 145, 890
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 3 cut(s) 159, 269, 642
FspBI CTAG 2 cut(s) 306, 923
FspI TGCGCA 1 cut(s) 812
GlaI GCGC 1 cut(s) 812
GluI GCNGC 3 cut(s) 159, 269, 642
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 4 cut(s) 175, 193, 943, 1019
HapII CCGG 3 cut(s) 179, 190, 945
HhaI GCGC 1 cut(s) 813
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 6 cut(s) 44, 61, 641, 743, 753, 980
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 5 cut(s) 253, 295, 581, 784, 1055
HpaII CCGG 3 cut(s) 179, 190, 945
HphI GGTGA 1 cut(s) 1016
Hpy166II GTNNAC 3 cut(s) 110, 617, 974
Hpy188I TCNGA 5 cut(s) 345, 586, 800, 933, 952
Hpy188III TCNNGA 6 cut(s) 93, 152, 236, 250, 290, 788
Hpy8I GTNNAC 3 cut(s) 110, 617, 974
HpyAV CCTTC 5 cut(s) 233, 393, 421, 584, 1001
HpyCH4III ACNGT 2 cut(s) 208, 712
HpyCH4IV ACGT 1 cut(s) 478
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 121, 172, 311, 713, 755
HpyF3I CTNAG 6 cut(s) 275, 291, 342, 585, 620, 761
HpySE526I ACGT 1 cut(s) 478
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 6 cut(s) 44, 61, 641, 743, 753, 980
HspAI GCGC 1 cut(s) 811
KpnI GGTACC 1 cut(s) 326
Kzo9I GATC 5 cut(s) 72, 382, 653, 769, 873
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 3 cut(s) 145, 280, 628
LweI GCATC 1 cut(s) 856
MaeI CTAG 2 cut(s) 306, 923
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 4 cut(s) 296, 518, 835, 964
MalI GATC 5 cut(s) 74, 384, 655, 771, 875
MboI GATC 5 cut(s) 72, 382, 653, 769, 873
MboII GAAGA 4 cut(s) 214, 224, 563, 674
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 5 cut(s) 83, 119, 169, 546, 849
MlyI GAGTC 5 cut(s) 247, 304, 575, 778, 1064
MmeI TCCRAC 1 cut(s) 631
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 3 cut(s) 45, 833, 1002
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 3 cut(s) 179, 190, 945
MspR9I CCNGG 1 cut(s) 945
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 4 cut(s) 24, 53, 716, 813
MwoI GCNNNNNNNGC 6 cut(s) 19, 121, 172, 311, 713, 755
NciI CCSGG 1 cut(s) 945
NdeII GATC 5 cut(s) 72, 382, 653, 769, 873
NlaIII CATG 6 cut(s) 44, 61, 641, 743, 753, 980
NlaIV GGNNCC 3 cut(s) 324, 336, 417
NmuCI GTSAC 4 cut(s) 296, 518, 835, 964
NsbI TGCGCA 1 cut(s) 812
NspI RCATGY 2 cut(s) 743, 980
OliI CACNNNNGTG 2 cut(s) 833, 1002
PaeI GCATGC 1 cut(s) 743
PciI ACATGT 1 cut(s) 976
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PctI GAATGC 4 cut(s) 24, 53, 716, 813
PkrI GCNGC 3 cut(s) 160, 270, 643
PleI GAGTC 5 cut(s) 247, 303, 575, 778, 1063
PpsI GAGTC 5 cut(s) 247, 303, 575, 778, 1063
PscI ACATGT 1 cut(s) 976
PshBI ATTAAT 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 13
PspN4I GGNNCC 3 cut(s) 324, 336, 417
PspPI GGNCC 6 cut(s) 37, 187, 192, 416, 942, 1017
PsrI GAACNNNNNNTAC 2 cut(s) 387, 419
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 2 cut(s) 158, 377
PsuI RGATCY 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 145
RsaI GTAC 2 cut(s) 324, 902
RsaNI GTAC 2 cut(s) 323, 901
RseI CAYNNNNRTG 3 cut(s) 45, 833, 1002
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 3 cut(s) 159, 269, 642
Sau3AI GATC 5 cut(s) 72, 382, 653, 769, 873
Sau96I GGNCC 6 cut(s) 37, 187, 192, 416, 942, 1017
SchI GAGTC 5 cut(s) 247, 304, 575, 778, 1064
ScrFI CCNGG 1 cut(s) 945
SduI GDGCHC 1 cut(s) 461
SfaNI GCATC 1 cut(s) 856
SfcI CTRYAG 2 cut(s) 159, 488
SinI GGWCC 3 cut(s) 37, 187, 416
SmiMI CAYNNNNRTG 3 cut(s) 45, 833, 1002
SmlI CTYRAG 2 cut(s) 452, 788
SmoI CTYRAG 2 cut(s) 452, 788
SphI GCATGC 1 cut(s) 743
Sse9I AATT 5 cut(s) 83, 119, 169, 546, 849
SsiI CCGC 1 cut(s) 559
SspI AATATT 1 cut(s) 732
SspMI CTAG 2 cut(s) 306, 923
StyD4I CCNGG 1 cut(s) 943
TaaI ACNGT 2 cut(s) 208, 712
TaiI ACGT 1 cut(s) 481
TaqI TCGA 2 cut(s) 117, 235
TasI AATT 5 cut(s) 83, 119, 169, 546, 849
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 4 cut(s) 307, 663, 765, 973
TseFI GTSAC 4 cut(s) 296, 518, 835, 964
TseI GCWGC 3 cut(s) 158, 268, 641
Tsp45I GTSAC 4 cut(s) 296, 518, 835, 964
TspDTI ATGAA 4 cut(s) 46, 353, 378, 626
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 4 cut(s) 307, 663, 765, 973
VpaK11BI GGWCC 3 cut(s) 37, 187, 416
VspI ATTAAT 1 cut(s) 138
XceI RCATGY 2 cut(s) 743, 980
XspI CTAG 2 cut(s) 306, 923
ZraI GACGTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.