Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0013448

Physical Location & Seq

Genomic Coordinates Reverse (-)

26017638 .. 26021329

Gene Structure 3692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG268200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCAGCGAAGCTGGGAATGCTCCATTATGTATTGGACCATGTGTATGGTGCATTCATGCACAGAACCAAGATAAGCCCTCAGTTTTTTTCAAGAGGGTGGGGTGGTAAACAGCTTGAATTGCTGGAGAGGATGATCAACCAGCTATTTCCAGAGGCTGCAGGGCAGAATTGGCCTCCCATTTTGGTCCGGCCCACTTGGAAAACTGTTTGGGAGAGCAAGAACGCTTGTCTTCGAGAAGGGGTGTTCAGAACTCCTTGTGATGAGCAGCTTCTTAGTGCATTGCCTCCTGAGAGTCACAACGCGAGAGTTGCTTTTCTTGTTCCGAAATCGGTTCCCCCTCAGAAAATGGCTTGTGTGGTTCATCTTGCAGGGACTGGGGACCATTCATTTGAACGAAGGTTACGACTTGGGGGACCATTATTGAAGGAAAACATTGCAACTATGGTGCTTGAGAGCCCTTTCTATGGACAAAGACGTCCTATGATGCAGCGTGGTGCAAAGCTATTGTGTGTTAGTGACTTGCTTTTATTAGGAAAGGCAACAATTGAAGAAGCCCGCAGTCTCTTGCATTGGTTAGACTCTGAGGAAGGGTTTGGGAAGATGGGTGTTTGTGGACTTAGTATGGGAGGAGTACATGCTGCAATGGTTGGATCACTGCACCCTACACCTGTTGCAACTCTTCCTTTTCTATCTCCGCACTCTGCTACTGTGGCATTCTGTGAGGGAATATTACAGCATGCTACTGCATGGGAGGCACTGAGAAAGGATCTTGCAGTAATGACTCTTGAGGAGGTCAGAGAACGAATGCGCAGTGTTTTGTCTCTCACAGACGTGACACGCTTTCCAATTCCAAAAAATCCCAATGCTGTGATATTTGTCTCTGCTACTGTAAGTATTGGATTTCAATATCAACTTATGAGTGTGTTGCAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2048

Protein Analysis

312

Amino Acids

34.65

Weight (kDa)

9.18

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABHD18	PF09752	28 - 258	2.7e-92	Alpha/beta hydrolase domain containing 18
ABHD18	PF09752	261 - 297	5.6e-06	Alpha/beta hydrolase domain containing 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12150
fragaria_vesca	FvH4_6g22800
malus_domestica	MD12G1062300.v1.1
prunus_persica	Prupe.7G072500_v2.0.a1 Prupe.7G072500_v2.0.a1
pyrus_communis	pycom12g05500 pycom14g05050
rosa_chinensis	RchiOBHm_Chr3g0480421
rosa_laevigata	RLG00000023483
rosa_multiflora	Rmu_sc0002205.1_g000024
rosa_roxburghii	Rroxscaffold_6G00401370
rosa_rugosa	Rorug03G0183800 Rorug03G0183900
rosa_samantha	Rh3AG235300 Rh3BG268200 Rh3CG265300 Rh3DG261200
rosa_wichuraiana	Rw3G021120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	477
AatII	GACGTC	1 cut(s)	481
Acc16I	TGCGCA	1 cut(s)	812
AccII	CGCG	1 cut(s)	305
AciI	CCGC	2 cut(s)	559, 698
AclWI	GGATC	2 cut(s)	661, 777
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	6 cut(s)	93, 119, 395, 427, 551, 908
AjiI	CACGTC	1 cut(s)	835
AleI	CACNNNNGTG	1 cut(s)	833
AluBI	AGCT	5 cut(s)	13, 115, 145, 271, 505
AluI	AGCT	5 cut(s)	13, 115, 145, 271, 505
Alw26I	GTCTC	3 cut(s)	569, 828, 886
AlwI	GGATC	2 cut(s)	661, 777
AlwNI	CAGNNNCTG	2 cut(s)	158, 377
AoxI	GGCC	2 cut(s)	173, 191
ApeKI	GCWGC	5 cut(s)	5, 158, 268, 490, 641
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	5 cut(s)	37, 187, 192, 382, 416
AvaII	GGWCC	4 cut(s)	37, 187, 382, 416
BanII	GRGCYC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	5 cut(s)	17, 145, 280, 502, 628
BccI	CCATC	1 cut(s)	598
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	3 cut(s)	569, 828, 886
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
BlsI	GCNGC	5 cut(s)	7, 160, 270, 492, 643
Bme18I	GGWCC	4 cut(s)	37, 187, 382, 416
BmgBI	CACGTC	1 cut(s)	835
BmgT120I	GGNCC	5 cut(s)	37, 187, 192, 382, 416
BmiI	GGNNCC	3 cut(s)	336, 383, 417
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	477
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	473, 809
BsaHI	GRCGYC	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	3 cut(s)	281, 435, 651
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	3 cut(s)	281, 435, 651
BseMII	CTCAG	5 cut(s)	95, 282, 356, 576, 752
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	2 cut(s)	645, 806
BseXI	GCAGC	5 cut(s)	17, 145, 280, 502, 628
BseYI	CCCAGC	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	175, 193
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	3 cut(s)	388, 395, 429
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	3 cut(s)	569, 828, 886
BsmFI	GGGAC	3 cut(s)	388, 395, 429
BsmI	GAATGC	4 cut(s)	24, 53, 716, 813
BsnI	GGCC	2 cut(s)	175, 193
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	3 cut(s)	135, 653, 769
BspACI	CCGC	2 cut(s)	559, 698
BspANI	GGCC	2 cut(s)	175, 193
BspCNI	CTCAG	5 cut(s)	94, 283, 355, 577, 753
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	3 cut(s)	336, 383, 417
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	2 cut(s)	661, 777
BsrDI	GCAATG	3 cut(s)	281, 435, 651
BsrI	ACTGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	135, 653, 769
BssNI	GRCGYC	1 cut(s)	478
Bst4CI	ACNGT	3 cut(s)	208, 712, 892
Bst6I	CTCTTC	1 cut(s)	687
BstACI	GRCGYC	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	559, 741
BstDEI	CTNAG	7 cut(s)	81, 275, 291, 342, 585, 620, 761
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	3 cut(s)	138, 656, 772
BstMAI	GTCTC	3 cut(s)	569, 828, 886
BstMBI	GATC	3 cut(s)	135, 653, 769
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 121, 172, 311, 713, 755
BstNSI	RCATGY	2 cut(s)	641, 743
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	5 cut(s)	17, 145, 280, 502, 628
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	769
BsuRI	GGCC	2 cut(s)	175, 193
BtrI	CACGTC	1 cut(s)	835
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	2 cut(s)	656, 820
BtsIMutI	CAGTG	3 cut(s)	656, 758, 820
Cac8I	GCNNGC	2 cut(s)	559, 741
CaiI	CAGNNNCTG	2 cut(s)	158, 377
CfoI	GCGC	1 cut(s)	813
Cfr13I	GGNCC	5 cut(s)	37, 187, 192, 382, 416
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	5 cut(s)	41, 58, 638, 740, 750
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	7 cut(s)	81, 275, 291, 342, 585, 620, 761
DpnI	GATC	3 cut(s)	137, 655, 771
DpnII	GATC	3 cut(s)	135, 653, 769
DrdI	GACNNNNNNGTC	1 cut(s)	477
DseDI	GACNNNNNNGTC	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	461
Eco47I	GGWCC	4 cut(s)	37, 187, 382, 416
EcoT38I	GRGCYC	1 cut(s)	461
FaeI	CATG	5 cut(s)	44, 61, 641, 743, 753
FaqI	GGGAC	3 cut(s)	388, 395, 429
FatI	CATG	5 cut(s)	40, 57, 637, 739, 749
FauI	CCCGC	1 cut(s)	566
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
FspI	TGCGCA	1 cut(s)	812
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
GsaI	CCCAGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	175, 193
HapII	CCGG	1 cut(s)	190
HhaI	GCGC	1 cut(s)	813
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	5 cut(s)	44, 61, 641, 743, 753
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HinfI	GANTC	3 cut(s)	295, 581, 784
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	110, 617
Hpy188I	TCNGA	5 cut(s)	251, 327, 345, 586, 800
Hpy188III	TCNNGA	5 cut(s)	93, 152, 236, 290, 788
Hpy8I	GTNNAC	2 cut(s)	110, 617
HpyAV	CCTTC	4 cut(s)	233, 393, 421, 584
HpyCH4III	ACNGT	3 cut(s)	208, 712, 892
HpyCH4IV	ACGT	2 cut(s)	478, 834
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 121, 172, 311, 713, 755
HpyF3I	CTNAG	7 cut(s)	81, 275, 291, 342, 585, 620, 761
HpySE526I	ACGT	2 cut(s)	478, 834
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	5 cut(s)	44, 61, 641, 743, 753
HspAI	GCGC	1 cut(s)	811
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	135, 653, 769
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	9 cut(s)	110, 147, 155, 165, 203, 303, 357, 363, 684
Lsp1109I	GCAGC	5 cut(s)	17, 145, 280, 502, 628
LweI	GCATC	1 cut(s)	477
MaeII	ACGT	2 cut(s)	478, 834
MaeIII	GTNAC	4 cut(s)	296, 402, 518, 835
MalI	GATC	3 cut(s)	137, 655, 771
MboI	GATC	3 cut(s)	135, 653, 769
MboII	GAAGA	4 cut(s)	224, 563, 613, 674
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	4 cut(s)	119, 169, 546, 849
MlyI	GAGTC	3 cut(s)	304, 575, 778
MmeI	TCCRAC	1 cut(s)	631
MslI	CAYNNNNRTG	2 cut(s)	45, 833
MspI	CCGG	1 cut(s)	190
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	4 cut(s)	24, 53, 716, 813
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	6 cut(s)	19, 121, 172, 311, 713, 755
NdeII	GATC	3 cut(s)	135, 653, 769
NlaIII	CATG	5 cut(s)	44, 61, 641, 743, 753
NlaIV	GGNNCC	3 cut(s)	336, 383, 417
NmuCI	GTSAC	3 cut(s)	296, 518, 835
NsbI	TGCGCA	1 cut(s)	812
NspI	RCATGY	2 cut(s)	641, 743
OliI	CACNNNNGTG	1 cut(s)	833
PaeI	GCATGC	1 cut(s)	743
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	4 cut(s)	24, 53, 716, 813
PkrI	GCNGC	5 cut(s)	7, 160, 270, 492, 643
PleI	GAGTC	3 cut(s)	303, 575, 778
PpsI	GAGTC	3 cut(s)	303, 575, 778
PspFI	CCCAGC	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	336, 383, 417
PspPI	GGNCC	5 cut(s)	37, 187, 192, 382, 416
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	2 cut(s)	158, 377
PsuI	RGATCY	1 cut(s)	769
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
RseI	CAYNNNNRTG	2 cut(s)	45, 833
SatI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
Sau3AI	GATC	3 cut(s)	135, 653, 769
Sau96I	GGNCC	5 cut(s)	37, 187, 192, 382, 416
SchI	GAGTC	3 cut(s)	304, 575, 778
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	4 cut(s)	37, 187, 382, 416
SmiMI	CAYNNNNRTG	2 cut(s)	45, 833
SmlI	CTYRAG	2 cut(s)	452, 788
SmoI	CTYRAG	2 cut(s)	452, 788
SphI	GCATGC	1 cut(s)	743
Sse9I	AATT	4 cut(s)	119, 169, 546, 849
SsiI	CCGC	2 cut(s)	559, 698
SspI	AATATT	1 cut(s)	732
TaaI	ACNGT	3 cut(s)	208, 712, 892
TaiI	ACGT	2 cut(s)	481, 837
TaqI	TCGA	1 cut(s)	235
TasI	AATT	4 cut(s)	119, 169, 546, 849
TatI	WGTACW	1 cut(s)	634
TscAI	CASTG	3 cut(s)	663, 765, 820
TseFI	GTSAC	3 cut(s)	296, 518, 835
TseI	GCWGC	5 cut(s)	5, 158, 268, 490, 641
Tsp45I	GTSAC	3 cut(s)	296, 518, 835
TspDTI	ATGAA	3 cut(s)	46, 353, 378
TspRI	CASTG	3 cut(s)	663, 765, 820
VpaK11BI	GGWCC	4 cut(s)	37, 187, 382, 416
XceI	RCATGY	2 cut(s)	641, 743
ZraI	GACGTC	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.