Rh3AG235300

protein C4orf29 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013448
Physical Location & Seq
Reverse (-)
24297411 .. 24302891
5481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG235300.1

Sequence Viewer

Length: 939 bp
ATGGCAGCGAAGCTGGGAATGCTCCATTATGTGTTGGACCATGTGTATGGTGCATTCATGCACAGAACCAAGATAAGCCCTCAGTTTTTTTCAAGAGGGTGGGGTGGCAAACAGCTTGAATTGCTGGAGAGGATGATTAACCAGCTATTTCCAGTGGCTGCAGCCCAGAATTGGCCGCCCATTTTGGTCCGGCCCACTTGGAAGACTGTTTGGGAGAGCAAGAACGCTTGTCTTCGAGAAGGGGTGTTCAGAACTCCTTGTGATGAGCAGCTTCTTAGTGCATTGCCTCCTGAGAGTCACAACGCGAGAGTTGCTTTTCTTGTTCCGAAATCGGTTCCCCCTCAGAAAATGGCTTGTGTGGTTCATCTTGCAGGGACTGGGGATCATTCATTTGAACGAAGGTTACGACTTGGGGCACCATTATTGAAGGAAAACATTGCAACTATGGTGCTTGAGAGCCCTTTCTATGGACAAAGACGTCCTATGATGCAGCGTGGTGCAAAGCTATTGTGTGTTAGTGACTTGCTTTTATTAGGAAAGGCAACCATTGAAGAAGCCCGCAGTCTTTTGCATTGGTTAGACTCTGAGGAAGGGTTTGGGAAGATGGGTGTTTGTGGACTTAGTATGGGAGGAGTACATGCTGCAATGGTTGGATCACTGCACCCTACACCTGTTGCAACTCTTCCTTTTCTATCTCCACACTCTGCTACTGTGGCATTCTGTGAGGGAATATTACAGCATGCTACTGCATGGGAGGCACTGAGAAAGGATCTTGCAGTAATGACTCTCGAGGAGGTCAGAGAACGAATGCGCAGTGTTTTGTCTCTCACAGATGTGACACGCTTTCCAATTCCAAAAAATCCCAATGCTGTGATATTTGTCTCTGCTACTGTAAGTATTGGATTTCAATATCAACTTACGAGTGTGTTGCAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2048

Protein Analysis

312

Amino Acids

34.62

Weight (kDa)

9.3

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABHD18 PF09752 28 - 258 7.3e-92 Alpha/beta hydrolase domain containing 18
ABHD18 PF09752 261 - 297 5.3e-06 Alpha/beta hydrolase domain containing 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12150
fragaria_vesca FvH4_6g22800
malus_domestica MD12G1062300.v1.1
prunus_persica Prupe.7G072500_v2.0.a1 Prupe.7G072500_v2.0.a1
pyrus_communis pycom12g05500 pycom14g05050
rosa_chinensis RchiOBHm_Chr3g0480421
rosa_laevigata RLG00000023483
rosa_multiflora Rmu_sc0002205.1_g000024
rosa_roxburghii Rroxscaffold_6G00401370
rosa_rugosa Rorug03G0183800 Rorug03G0183900
rosa_samantha Rh3AG235300 Rh3BG268200 Rh3CG265300 Rh3DG261200
rosa_wichuraiana Rw3G021120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 477
AatII GACGTC 1 cut(s) 481
Acc16I TGCGCA 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 415
AccII CGCG 1 cut(s) 305
AciI CCGC 2 cut(s) 176, 559
AclWI GGATC 3 cut(s) 390, 661, 777
AcoI YGGCCR 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 478
AfaI GTAC 1 cut(s) 636
AfiI CCNNNNNNNGG 2 cut(s) 171, 467
AgsI TTSAA 6 cut(s) 93, 119, 395, 427, 551, 908
AleI CACNNNNGTG 1 cut(s) 833
AluBI AGCT 5 cut(s) 13, 115, 145, 271, 505
AluI AGCT 5 cut(s) 13, 115, 145, 271, 505
Alw26I GTCTC 2 cut(s) 828, 886
AlwI GGATC 3 cut(s) 390, 661, 777
AlwNI CAGNNNCTG 2 cut(s) 158, 377
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 2 cut(s) 173, 191
ApeKI GCWGC 6 cut(s) 5, 158, 161, 268, 490, 641
AspLEI GCGC 1 cut(s) 813
AspS9I GGNCC 3 cut(s) 37, 187, 192
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 2 cut(s) 37, 187
BaeGI GKGCMC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 461
BbsI GAAGAC 2 cut(s) 209, 224
BbvI GCAGC 6 cut(s) 17, 145, 173, 280, 502, 628
BccI CCATC 1 cut(s) 598
BcgI CGANNNNNNTGC 1 cut(s) 910
BcoDI GTCTC 2 cut(s) 828, 886
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 7 cut(s) 6, 159, 162, 176, 269, 491, 642
BlsI GCNGC 7 cut(s) 7, 160, 163, 177, 270, 492, 643
Bme18I GGWCC 2 cut(s) 37, 187
BmeT110I CYCGRG 1 cut(s) 788
BmgT120I GGNCC 3 cut(s) 37, 187, 192
BmiI GGNNCC 2 cut(s) 336, 417
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 477
BmuI ACTGGG 1 cut(s) 387
BpiI GAAGAC 2 cut(s) 209, 224
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 478
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 467
Bse1I ACTGG 2 cut(s) 152, 382
Bse3DI GCAATG 3 cut(s) 281, 435, 651
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 171, 467
BseMI GCAATG 3 cut(s) 281, 435, 651
BseMII CTCAG 5 cut(s) 95, 282, 356, 576, 752
BseNI ACTGG 2 cut(s) 152, 382
BseRI GAGGAG 2 cut(s) 645, 806
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 6 cut(s) 17, 145, 173, 280, 502, 628
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 644
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 2 cut(s) 175, 193
BshNI GGYRCC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 171, 467
BsmAI GTCTC 2 cut(s) 828, 886
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 4 cut(s) 24, 53, 716, 813
BsnI GGCC 2 cut(s) 175, 193
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 2 cut(s) 418, 461
Bsp143I GATC 3 cut(s) 382, 653, 769
BspACI CCGC 2 cut(s) 176, 559
BspANI GGCC 2 cut(s) 175, 193
BspCNI CTCAG 5 cut(s) 94, 283, 355, 577, 753
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 336, 417
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 3 cut(s) 390, 661, 777
BspT107I GGYRCC 1 cut(s) 415
BsrDI GCAATG 3 cut(s) 281, 435, 651
BsrI ACTGG 2 cut(s) 152, 382
BssMI GATC 3 cut(s) 382, 653, 769
BssNI GRCGYC 1 cut(s) 478
Bst4CI ACNGT 3 cut(s) 208, 712, 892
Bst6I CTCTTC 1 cut(s) 687
BstACI GRCGYC 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 559, 741
BstDEI CTNAG 7 cut(s) 81, 275, 291, 342, 585, 620, 761
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 3 cut(s) 385, 656, 772
BstMAI GTCTC 2 cut(s) 828, 886
BstMBI GATC 3 cut(s) 382, 653, 769
BstMWI GCNNNNNNNGC 5 cut(s) 19, 121, 311, 713, 755
BstNSI RCATGY 2 cut(s) 641, 743
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 6 cut(s) 17, 145, 173, 280, 502, 628
BstV2I GAAGAC 2 cut(s) 209, 224
BstX2I RGATCY 1 cut(s) 769
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 769
BsuRI GGCC 2 cut(s) 175, 193
BtsCI GGATG 1 cut(s) 138
BtsI GCAGTG 2 cut(s) 656, 820
BtsIMutI CAGTG 4 cut(s) 159, 656, 758, 820
Cac8I GCNNGC 2 cut(s) 559, 741
CaiI CAGNNNCTG 2 cut(s) 158, 377
CfoI GCGC 1 cut(s) 813
Cfr13I GGNCC 3 cut(s) 37, 187, 192
Csp6I GTAC 1 cut(s) 635
CviAII CATG 5 cut(s) 41, 58, 638, 740, 750
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 7 cut(s) 81, 275, 291, 342, 585, 620, 761
DpnI GATC 3 cut(s) 384, 655, 771
DpnII GATC 3 cut(s) 382, 653, 769
DrdI GACNNNNNNGTC 1 cut(s) 477
DseDI GACNNNNNNGTC 1 cut(s) 477
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 37, 187
Eco88I CYCGRG 1 cut(s) 788
EcoT38I GRGCYC 1 cut(s) 461
FaeI CATG 5 cut(s) 44, 61, 641, 743, 753
FaqI GGGAC 1 cut(s) 388
FatI CATG 5 cut(s) 40, 57, 637, 739, 749
FauI CCCGC 1 cut(s) 566
Fnu4HI GCNGC 7 cut(s) 6, 159, 162, 176, 269, 491, 642
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 7 cut(s) 6, 159, 162, 176, 269, 491, 642
FspI TGCGCA 1 cut(s) 812
GlaI GCGC 1 cut(s) 812
GluI GCNGC 7 cut(s) 6, 159, 162, 176, 269, 491, 642
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 2 cut(s) 175, 193
HapII CCGG 1 cut(s) 190
HhaI GCGC 1 cut(s) 813
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 5 cut(s) 44, 61, 641, 743, 753
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HinfI GANTC 3 cut(s) 295, 581, 784
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 5 cut(s) 251, 327, 345, 586, 800
Hpy188III TCNNGA 4 cut(s) 93, 236, 290, 788
Hpy8I GTNNAC 1 cut(s) 617
HpyAV CCTTC 4 cut(s) 233, 393, 421, 584
HpyCH4III ACNGT 3 cut(s) 208, 712, 892
HpyCH4IV ACGT 1 cut(s) 478
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 121, 311, 713, 755
HpyF3I CTNAG 7 cut(s) 81, 275, 291, 342, 585, 620, 761
HpySE526I ACGT 1 cut(s) 478
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 5 cut(s) 44, 61, 641, 743, 753
HspAI GCGC 1 cut(s) 811
Kzo9I GATC 3 cut(s) 382, 653, 769
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 9 cut(s) 110, 155, 165, 179, 203, 303, 357, 363, 684
Lsp1109I GCAGC 6 cut(s) 17, 145, 173, 280, 502, 628
LweI GCATC 1 cut(s) 477
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 4 cut(s) 296, 402, 518, 835
MalI GATC 3 cut(s) 384, 655, 771
MboI GATC 3 cut(s) 382, 653, 769
MboII GAAGA 5 cut(s) 214, 224, 563, 613, 674
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 2 cut(s) 418, 461
MluCI AATT 3 cut(s) 119, 169, 849
MlyI GAGTC 3 cut(s) 304, 575, 778
MmeI TCCRAC 2 cut(s) 15, 631
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 2 cut(s) 45, 833
MspI CCGG 1 cut(s) 190
Mva1269I GAATGC 4 cut(s) 24, 53, 716, 813
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 5 cut(s) 19, 121, 311, 713, 755
NdeII GATC 3 cut(s) 382, 653, 769
NlaIII CATG 5 cut(s) 44, 61, 641, 743, 753
NlaIV GGNNCC 2 cut(s) 336, 417
NmuCI GTSAC 3 cut(s) 296, 518, 835
NsbI TGCGCA 1 cut(s) 812
NspI RCATGY 2 cut(s) 641, 743
OliI CACNNNNGTG 1 cut(s) 833
PaeI GCATGC 1 cut(s) 743
PaeR7I CTCGAG 1 cut(s) 788
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PctI GAATGC 4 cut(s) 24, 53, 716, 813
PkrI GCNGC 7 cut(s) 7, 160, 163, 177, 270, 492, 643
PleI GAGTC 3 cut(s) 303, 575, 778
PpsI GAGTC 3 cut(s) 303, 575, 778
PspFI CCCAGC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 336, 417
PspPI GGNCC 3 cut(s) 37, 187, 192
PsrI GAACNNNNNNTAC 2 cut(s) 387, 419
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 2 cut(s) 158, 377
PsuI RGATCY 1 cut(s) 769
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
RseI CAYNNNNRTG 2 cut(s) 45, 833
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 7 cut(s) 6, 159, 162, 176, 269, 491, 642
Sau3AI GATC 3 cut(s) 382, 653, 769
Sau96I GGNCC 3 cut(s) 37, 187, 192
SchI GAGTC 3 cut(s) 304, 575, 778
SduI GDGCHC 2 cut(s) 418, 461
SetI ASST 9 cut(s) 15, 117, 147, 273, 404, 481, 507, 673, 798
SfaNI GCATC 1 cut(s) 477
SfcI CTRYAG 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 788
SinI GGWCC 2 cut(s) 37, 187
SlaI CTCGAG 1 cut(s) 788
SmiMI CAYNNNNRTG 2 cut(s) 45, 833
SmlI CTYRAG 2 cut(s) 452, 788
SmoI CTYRAG 2 cut(s) 452, 788
SphI GCATGC 1 cut(s) 743
Sse9I AATT 3 cut(s) 119, 169, 849
SsiI CCGC 2 cut(s) 176, 559
SspI AATATT 1 cut(s) 732
TaaI ACNGT 3 cut(s) 208, 712, 892
TaiI ACGT 1 cut(s) 481
TaqI TCGA 2 cut(s) 235, 789
TasI AATT 3 cut(s) 119, 169, 849
TatI WGTACW 1 cut(s) 634
TauI GCSGC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 4 cut(s) 159, 663, 765, 820
TseFI GTSAC 3 cut(s) 296, 518, 835
TseI GCWGC 6 cut(s) 5, 158, 161, 268, 490, 641
Tsp45I GTSAC 3 cut(s) 296, 518, 835
TspDTI ATGAA 3 cut(s) 46, 353, 378
TspRI CASTG 4 cut(s) 159, 663, 765, 820
VpaK11BI GGWCC 2 cut(s) 37, 187
XceI RCATGY 2 cut(s) 641, 743
XhoI CTCGAG 1 cut(s) 788
ZraI GACGTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.