Rw3G021120

protein C4orf29 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013448
Physical Location & Seq
Reverse (-)
25334056 .. 25336935
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021120.1

Sequence Viewer

Length: 1050 bp
ATGGCAGCGAAGCTGGGAATGCTCCATTATGTATTGGACCATGTGTATGGTGCATTCATGCACAGAACCAAGATAAGCCCTCAGTTTTTTTCAAGAGGGTGGGGTGGTAAACAGCTTGAATTGCTGGAGAGGATGATTAACCAGCTATTTCCAGTGGCTGCAGCCGAGAATTGGCCTCCCATTTTGGTCCGGCCCACTTGGAAAACTGTTTGGGAGAGCAAGAACGCTTGTCTTCGAGAAGGGGTGTTCAGAACTCCTTGTGATGAGCAGCTTCTTAGTGCATTGCCTCCTGAGAGTCACAACGCGAGAGTTGCTTTTCTTGTTCCCAAATCGGTTCCCCCTCAGAAAATGGCTTGGACTGGGGACCATTCATTTGAACGAAGGTTACGACTTGGGGGACCATTATTGAAGGAAAACATTGCAACTATGGTGCTTGAGAGCCCTTTCTATGGACAAAGACGTCCTATGATGCAGCGTGGTGCAAAGCTATTGTGTGTTAGTGACTTGCTTTTATTAGGAAAGGCAACCATTGAAGAAGCCCGCAGTCTTTTGCATTGGTTAGACTCTGAGGAAGGGTTTGGGAAGATGGGTGTTTGTGGACTTAGTATGGGAGGAGTACATGCTGCAATGGTTGGATCACTGCACCCTACACCTGTTGCAACTCTTCCTTTTCTATCTCCACACTCTGCTACTGTGGCATTCTGTGAGGGAATATTACAGCATGCTACTGCATGGGAGGCACTGAGAAAGGATCTTGCAGTAATGACTCTCGAGGAGGTCAGAGAACGAATGCGCAGTGTTTTGTCTCTCACAGATGTGACACGCTTTCCAATTCCAAAAAATCCCAATGCTGTGATATTTGTCTCTGCTACTGATGATGGGTACATCCCAAAACACTCTGTGCTAGAGCTTCAAAAAGCTTGGCCCGGTTCAGAAGTAAGATGGGTCACTGGTGGACATGTCTCATCTTTCCTTCTCCACAATGGCGAGTTCCGCAGGGCCATTGTTGATGGACTTGACAGATTAGAATGGAAGGAGTCTCCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2048

Protein Analysis

349

Amino Acids

39.03

Weight (kDa)

8.78

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABHD18 PF09752 28 - 252 1.4e-83 Alpha/beta hydrolase domain containing 18
ABHD18 PF09752 255 - 341 6.2e-33 Alpha/beta hydrolase domain containing 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12150
fragaria_vesca FvH4_6g22800
malus_domestica MD12G1062300.v1.1
prunus_persica Prupe.7G072500_v2.0.a1 Prupe.7G072500_v2.0.a1
pyrus_communis pycom12g05500 pycom14g05050
rosa_chinensis RchiOBHm_Chr3g0480421
rosa_laevigata RLG00000023483
rosa_multiflora Rmu_sc0002205.1_g000024
rosa_roxburghii Rroxscaffold_6G00401370
rosa_rugosa Rorug03G0183800 Rorug03G0183900
rosa_samantha Rh3AG235300 Rh3BG268200 Rh3CG265300 Rh3DG261200
rosa_wichuraiana Rw3G021120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 459
AatII GACGTC 1 cut(s) 463
Acc16I TGCGCA 1 cut(s) 794
AccII CGCG 1 cut(s) 305
AciI CCGC 2 cut(s) 541, 994
AclWI GGATC 2 cut(s) 643, 759
AcyI GRCGYC 1 cut(s) 460
AdeI CACNNNGTG 1 cut(s) 901
AfaI GTAC 2 cut(s) 618, 884
AfiI CCNNNNNNNGG 2 cut(s) 171, 449
AflIII ACRYGT 1 cut(s) 958
AgsI TTSAA 6 cut(s) 93, 119, 377, 409, 533, 914
AleI CACNNNNGTG 1 cut(s) 815
AluBI AGCT 7 cut(s) 13, 115, 145, 271, 487, 910, 920
AluI AGCT 7 cut(s) 13, 115, 145, 271, 487, 910, 920
Alw26I GTCTC 4 cut(s) 810, 868, 967, 1044
AlwI GGATC 2 cut(s) 643, 759
AlwNI CAGNNNCTG 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 770
AoxI GGCC 4 cut(s) 173, 191, 923, 999
ApeKI GCWGC 6 cut(s) 5, 158, 161, 268, 472, 623
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 1 cut(s) 795
AspS9I GGNCC 7 cut(s) 37, 187, 192, 364, 398, 924, 999
AsuC2I CCSGG 1 cut(s) 927
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 4 cut(s) 37, 187, 364, 398
BanII GRGCYC 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 224
BbvI GCAGC 6 cut(s) 17, 145, 173, 280, 484, 610
BccI CCATC 4 cut(s) 580, 872, 936, 1004
BcnI CCSGG 1 cut(s) 927
BcoDI GTCTC 4 cut(s) 810, 868, 967, 1044
BfaI CTAG 1 cut(s) 905
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 6 cut(s) 6, 159, 162, 269, 473, 624
BlsI GCNGC 6 cut(s) 7, 160, 163, 270, 474, 625
Bme1390I CCNGG 1 cut(s) 927
Bme18I GGWCC 4 cut(s) 37, 187, 364, 398
BmeT110I CYCGRG 1 cut(s) 770
BmgT120I GGNCC 7 cut(s) 37, 187, 192, 364, 398, 924, 999
BmiI GGNNCC 3 cut(s) 336, 365, 399
BmrFI CCNGG 1 cut(s) 927
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 459
BmuI ACTGGG 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 927
BsaHI GRCGYC 1 cut(s) 460
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 449
Bse1I ACTGG 3 cut(s) 152, 364, 955
Bse3DI GCAATG 3 cut(s) 281, 417, 633
BseGI GGATG 2 cut(s) 138, 885
BseLI CCNNNNNNNGG 2 cut(s) 171, 449
BseMI GCAATG 3 cut(s) 281, 417, 633
BseMII CTCAG 5 cut(s) 95, 282, 356, 558, 734
BseNI ACTGG 3 cut(s) 152, 364, 955
BseRI GAGGAG 2 cut(s) 627, 788
BseXI GCAGC 6 cut(s) 17, 145, 173, 280, 484, 610
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 626
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 4 cut(s) 175, 193, 925, 1001
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 2 cut(s) 190, 927
BslFI GGGAC 2 cut(s) 377, 411
BslI CCNNNNNNNGG 2 cut(s) 171, 449
BsmAI GTCTC 4 cut(s) 810, 868, 967, 1044
BsmFI GGGAC 2 cut(s) 377, 411
BsmI GAATGC 4 cut(s) 24, 53, 698, 795
BsnI GGCC 4 cut(s) 175, 193, 925, 1001
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 2 cut(s) 635, 751
BspACI CCGC 2 cut(s) 541, 994
BspANI GGCC 4 cut(s) 175, 193, 925, 1001
BspCNI CTCAG 5 cut(s) 94, 283, 355, 559, 735
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 3 cut(s) 336, 365, 399
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 2 cut(s) 643, 759
BsrDI GCAATG 3 cut(s) 281, 417, 633
BsrI ACTGG 3 cut(s) 152, 364, 955
BssMI GATC 2 cut(s) 635, 751
BssNI GRCGYC 1 cut(s) 460
Bst4CI ACNGT 2 cut(s) 208, 694
Bst6I CTCTTC 1 cut(s) 669
BstACI GRCGYC 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 541, 723
BstDEI CTNAG 7 cut(s) 81, 275, 291, 342, 567, 602, 743
BstF5I GGATG 2 cut(s) 138, 885
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 1 cut(s) 795
BstKTI GATC 2 cut(s) 638, 754
BstMAI GTCTC 4 cut(s) 810, 868, 967, 1044
BstMBI GATC 2 cut(s) 635, 751
BstMWI GCNNNNNNNGC 6 cut(s) 19, 121, 311, 695, 737, 993
BstNSI RCATGY 3 cut(s) 623, 725, 962
BstSCI CCNGG 1 cut(s) 925
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 6 cut(s) 17, 145, 173, 280, 484, 610
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 751
BsuRI GGCC 4 cut(s) 175, 193, 925, 1001
BtsCI GGATG 2 cut(s) 138, 885
BtsI GCAGTG 2 cut(s) 638, 802
BtsIMutI CAGTG 5 cut(s) 159, 638, 740, 802, 948
Cac8I GCNNGC 2 cut(s) 541, 723
CaiI CAGNNNCTG 1 cut(s) 158
CfoI GCGC 1 cut(s) 795
Cfr13I GGNCC 7 cut(s) 37, 187, 192, 364, 398, 924, 999
Csp6I GTAC 2 cut(s) 617, 883
CviAII CATG 6 cut(s) 41, 58, 620, 722, 732, 959
CviQI GTAC 2 cut(s) 617, 883
DdeI CTNAG 7 cut(s) 81, 275, 291, 342, 567, 602, 743
DpnI GATC 2 cut(s) 637, 753
DpnII GATC 2 cut(s) 635, 751
DraIII CACNNNGTG 1 cut(s) 901
DrdI GACNNNNNNGTC 1 cut(s) 459
DseDI GACNNNNNNGTC 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 443
Eco47I GGWCC 4 cut(s) 37, 187, 364, 398
Eco88I CYCGRG 1 cut(s) 770
EcoT38I GRGCYC 1 cut(s) 443
FaeI CATG 6 cut(s) 44, 61, 623, 725, 735, 962
FaqI GGGAC 2 cut(s) 377, 411
FatI CATG 6 cut(s) 40, 57, 619, 721, 731, 958
FauI CCCGC 1 cut(s) 548
Fnu4HI GCNGC 6 cut(s) 6, 159, 162, 269, 473, 624
FokI GGATG 2 cut(s) 145, 872
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 6 cut(s) 6, 159, 162, 269, 473, 624
FspBI CTAG 1 cut(s) 905
FspI TGCGCA 1 cut(s) 794
GlaI GCGC 1 cut(s) 794
GluI GCNGC 6 cut(s) 6, 159, 162, 269, 473, 624
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 4 cut(s) 175, 193, 925, 1001
HapII CCGG 2 cut(s) 190, 927
HhaI GCGC 1 cut(s) 795
Hin1I GRCGYC 1 cut(s) 460
Hin1II CATG 6 cut(s) 44, 61, 623, 725, 735, 962
Hin6I GCGC 1 cut(s) 793
HinP1I GCGC 1 cut(s) 793
HindIII AAGCTT 1 cut(s) 918
HinfI GANTC 4 cut(s) 295, 563, 766, 1037
HpaII CCGG 2 cut(s) 190, 927
Hpy166II GTNNAC 3 cut(s) 110, 599, 956
Hpy188I TCNGA 5 cut(s) 251, 345, 568, 782, 934
Hpy188III TCNNGA 4 cut(s) 93, 236, 290, 770
Hpy8I GTNNAC 3 cut(s) 110, 599, 956
HpyAV CCTTC 6 cut(s) 233, 375, 403, 566, 983, 1027
HpyCH4III ACNGT 2 cut(s) 208, 694
HpyCH4IV ACGT 1 cut(s) 460
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 121, 311, 695, 737, 993
HpyF3I CTNAG 7 cut(s) 81, 275, 291, 342, 567, 602, 743
HpySE526I ACGT 1 cut(s) 460
Hsp92I GRCGYC 1 cut(s) 460
Hsp92II CATG 6 cut(s) 44, 61, 623, 725, 735, 962
HspAI GCGC 1 cut(s) 793
Kzo9I GATC 2 cut(s) 635, 751
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 6 cut(s) 17, 145, 173, 280, 484, 610
LweI GCATC 1 cut(s) 459
MaeI CTAG 1 cut(s) 905
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 5 cut(s) 296, 384, 500, 817, 946
MalI GATC 2 cut(s) 637, 753
MboI GATC 2 cut(s) 635, 751
MboII GAAGA 4 cut(s) 224, 545, 595, 656
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 3 cut(s) 119, 169, 831
MlyI GAGTC 4 cut(s) 304, 557, 760, 1046
MmeI TCCRAC 1 cut(s) 613
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 2 cut(s) 45, 815
MspI CCGG 2 cut(s) 190, 927
MspR9I CCNGG 1 cut(s) 927
Mva1269I GAATGC 4 cut(s) 24, 53, 698, 795
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 6 cut(s) 19, 121, 311, 695, 737, 993
NciI CCSGG 1 cut(s) 927
NdeII GATC 2 cut(s) 635, 751
NlaIII CATG 6 cut(s) 44, 61, 623, 725, 735, 962
NlaIV GGNNCC 3 cut(s) 336, 365, 399
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 4 cut(s) 296, 500, 817, 946
NsbI TGCGCA 1 cut(s) 794
NspI RCATGY 3 cut(s) 623, 725, 962
OliI CACNNNNGTG 1 cut(s) 815
PaeI GCATGC 1 cut(s) 725
PaeR7I CTCGAG 1 cut(s) 770
PciI ACATGT 1 cut(s) 958
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PctI GAATGC 4 cut(s) 24, 53, 698, 795
PkrI GCNGC 6 cut(s) 7, 160, 163, 270, 474, 625
PleI GAGTC 4 cut(s) 303, 557, 760, 1045
PpsI GAGTC 4 cut(s) 303, 557, 760, 1045
PscI ACATGT 1 cut(s) 958
PspFI CCCAGC 1 cut(s) 13
PspN4I GGNNCC 3 cut(s) 336, 365, 399
PspPI GGNCC 7 cut(s) 37, 187, 192, 364, 398, 924, 999
PsrI GAACNNNNNNTAC 2 cut(s) 369, 401
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 751
RsaI GTAC 2 cut(s) 618, 884
RsaNI GTAC 2 cut(s) 617, 883
RseI CAYNNNNRTG 2 cut(s) 45, 815
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 6 cut(s) 6, 159, 162, 269, 473, 624
Sau3AI GATC 2 cut(s) 635, 751
Sau96I GGNCC 7 cut(s) 37, 187, 192, 364, 398, 924, 999
SchI GAGTC 4 cut(s) 304, 557, 760, 1046
ScrFI CCNGG 1 cut(s) 927
SduI GDGCHC 1 cut(s) 443
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 770
SinI GGWCC 4 cut(s) 37, 187, 364, 398
SlaI CTCGAG 1 cut(s) 770
SmiMI CAYNNNNRTG 2 cut(s) 45, 815
SmlI CTYRAG 2 cut(s) 434, 770
SmoI CTYRAG 2 cut(s) 434, 770
SphI GCATGC 1 cut(s) 725
Sse9I AATT 3 cut(s) 119, 169, 831
SsiI CCGC 2 cut(s) 541, 994
SspI AATATT 1 cut(s) 714
SspMI CTAG 1 cut(s) 905
StyD4I CCNGG 1 cut(s) 925
TaaI ACNGT 2 cut(s) 208, 694
TaiI ACGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 235, 771
TasI AATT 3 cut(s) 119, 169, 831
TatI WGTACW 1 cut(s) 616
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 5 cut(s) 159, 645, 747, 802, 955
TseFI GTSAC 4 cut(s) 296, 500, 817, 946
TseI GCWGC 6 cut(s) 5, 158, 161, 268, 472, 623
Tsp45I GTSAC 4 cut(s) 296, 500, 817, 946
TspDTI ATGAA 2 cut(s) 46, 360
TspRI CASTG 5 cut(s) 159, 645, 747, 802, 955
VpaK11BI GGWCC 4 cut(s) 37, 187, 364, 398
XceI RCATGY 3 cut(s) 623, 725, 962
XhoI CTCGAG 1 cut(s) 770
XspI CTAG 1 cut(s) 905
ZraI GACGTC 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.