pycom12g05500

protein C4orf29 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013448
Physical Location & Seq
Reverse (-)
5373999 .. 5376492
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g05500.5

Sequence Viewer

Length: 1083 bp
ATGGTGACTGTGAATCTGGGAATGCTCCATTATGTTCTGGACCATGTGTATGGTGCATTCATGCACAGAACGAAGATAAGCCCTCAATTTTTTTCGAGAGGGTGGGGCGGCTCAAAGCTTGAGTTGCTCGAGAGGATGATAAAGCAGCTTTTCCCGGAAGCAGCTGGCCAGAATTGGCCTCCCGCTGTGATCCAACCCACTTGGAAAACTGTTTGGGAGAGCAAGACGGCTTCTCTCAGAGAAGGGATTTTCAGGACGCCTTGTGATGAGCAGCTTCTCGGTGCATTGCCTCCTGAGAGTCACCGTGCAAGAGTTGCATTTCTTGTTCCGAAGTCGGTTCCTCCTCAGAGGATGGCCTGTGTTGTTCATCTTGCAGGAACTGGGGACCATACATTTGAACGAAGGTTACGTCTTGGTGGACCGTTGCTGAAGGAAAACATTGCTACTATGGTGCTTGAGAGCCCTTTCTATGGACAAAGACGTCCTGTAATGCAGCGTGGGGCAAGACTCTTGTGTGTTAGTGACTTGCTTTTATTAGGAAAGGCAACCATTGAAGAAGCTCGCAGTCTCTTGCATTGGTTAGACTGTGAGGCGGGATTTGGCAAGATGGGTGTTTGTGGGCTTAGTATGGGAGGAGTACATGCTGCGATGGTTGGATCACTGCACCCTACACCTGTTGCAACCCTTCCTTTTCTTTCTCCACACTCAGCTGTTGTGGCATTCTGTGAGGGAATATTACAGCATGCAACTGCATGGGAGGCACTGAGAGATGATCTTGCAGTGCAGAAGGCTGCAATGACTCTCGAGGAGGTGAGAGAACGGATGCGCAATGTCCTGTCTCTCACAGATGTCACACGCTTTCCGATTCCAAAAAATCCCAATGCTGTGATATTTGTTTCTGCCACTGATGATGGGTACATCCCGAAACACTCTGTGCTAGAGCTTCAAAAAGCTTGGCCGGGTTCAGAAGTAAGATGGGTCACTGGCGGGCATGTCTCATCTTTCCTTCTCCACAATGGTGAGTTCCGGAGGGCCATTGTTGACGGACTTGACAGATTGCCATGGAAGGAGTCTCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2048

Protein Analysis

361

Amino Acids

39.96

Weight (kDa)

8.9

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12150
fragaria_vesca FvH4_6g22800
malus_domestica MD12G1062300.v1.1
prunus_persica Prupe.7G072500_v2.0.a1 Prupe.7G072500_v2.0.a1
pyrus_communis pycom12g05500 pycom14g05050
rosa_chinensis RchiOBHm_Chr3g0480421
rosa_laevigata RLG00000023483
rosa_multiflora Rmu_sc0002205.1_g000024
rosa_roxburghii Rroxscaffold_6G00401370
rosa_rugosa Rorug03G0183800 Rorug03G0183900
rosa_samantha Rh3AG235300 Rh3BG268200 Rh3CG265300 Rh3DG261200
rosa_wichuraiana Rw3G021120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 480
AatII GACGTC 1 cut(s) 484
Acc16I TGCGCA 1 cut(s) 827
AccIII TCCGGA 1 cut(s) 1026
AciI CCGC 4 cut(s) 108, 183, 593, 987
AclWI GGATC 2 cut(s) 184, 664
AcoI YGGCCR 2 cut(s) 166, 956
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 2 cut(s) 257, 481
AdeI CACNNNGTG 1 cut(s) 934
AfaI GTAC 2 cut(s) 639, 917
AfiI CCNNNNNNNGG 1 cut(s) 470
AgsI TTSAA 3 cut(s) 398, 554, 947
AleI CACNNNNGTG 1 cut(s) 1017
AluBI AGCT 8 cut(s) 118, 148, 164, 274, 560, 710, 943, 953
AluI AGCT 8 cut(s) 118, 148, 164, 274, 560, 710, 943, 953
Alw26I GTCTC 4 cut(s) 572, 843, 1000, 1077
AlwI GGATC 2 cut(s) 184, 664
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 2 cut(s) 128, 803
Aor13HI TCCGGA 1 cut(s) 1026
AoxI GGCC 5 cut(s) 166, 176, 354, 956, 1032
ApeKI GCWGC 6 cut(s) 145, 161, 271, 493, 644, 791
ArsI GACNNNNNNTTYG 4 cut(s) 377, 394, 409, 426
AspLEI GCGC 1 cut(s) 828
AspS9I GGNCC 4 cut(s) 40, 385, 419, 1032
AsuC2I CCSGG 2 cut(s) 155, 960
AsuHPI GGTGA 4 cut(s) 16, 293, 823, 1031
AvaI CYCGRG 2 cut(s) 128, 803
AvaII GGWCC 3 cut(s) 40, 385, 419
BalI TGGCCA 1 cut(s) 168
BanII GRGCYC 1 cut(s) 464
BbvI GCAGC 6 cut(s) 157, 173, 283, 505, 631, 778
BccI CCATC 5 cut(s) 346, 601, 643, 905, 969
BceAI ACGGC 1 cut(s) 243
BcnI CCSGG 2 cut(s) 155, 960
BcoDI GTCTC 4 cut(s) 572, 843, 1000, 1077
BfaI CTAG 1 cut(s) 938
BisI GCNGC 7 cut(s) 109, 146, 162, 272, 494, 645, 792
BlsI GCNGC 7 cut(s) 110, 147, 163, 273, 495, 646, 793
Bme1390I CCNGG 2 cut(s) 155, 960
Bme18I GGWCC 3 cut(s) 40, 385, 419
BmeT110I CYCGRG 2 cut(s) 128, 803
BmgT120I GGNCC 4 cut(s) 40, 385, 419, 1032
BmiI GGNNCC 2 cut(s) 339, 386
BmrFI CCNGG 2 cut(s) 155, 960
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 813
BmuI ACTGGG 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 140, 476
BpuMI CCSGG 2 cut(s) 155, 960
BsaHI GRCGYC 2 cut(s) 257, 481
BsaJI CCNNGG 1 cut(s) 1061
BsaWI WCCGGW 1 cut(s) 1026
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 385, 988
Bse3DI GCAATG 4 cut(s) 284, 438, 801, 835
BseAI TCCGGA 1 cut(s) 1026
BseDI CCNNGG 1 cut(s) 1061
BseGI GGATG 4 cut(s) 141, 357, 828, 918
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMI GCAATG 4 cut(s) 284, 438, 801, 835
BseMII CTCAG 5 cut(s) 250, 285, 359, 720, 755
BseNI ACTGG 2 cut(s) 385, 988
BseRI GAGGAG 3 cut(s) 333, 648, 821
BseXI GCAGC 6 cut(s) 157, 173, 283, 505, 631, 778
BsgI GTGCAG 2 cut(s) 647, 803
BshFI GGCC 5 cut(s) 168, 178, 356, 958, 1034
BsiHKCI CYCGRG 2 cut(s) 128, 803
BsiSI CCGG 3 cut(s) 155, 959, 1027
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 470
BsmAI GTCTC 4 cut(s) 572, 843, 1000, 1077
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 3 cut(s) 27, 56, 719
BsnI GGCC 5 cut(s) 168, 178, 356, 958, 1034
BsoBI CYCGRG 2 cut(s) 128, 803
Bsp1286I GDGCHC 1 cut(s) 464
Bsp13I TCCGGA 1 cut(s) 1026
Bsp143I GATC 3 cut(s) 189, 656, 772
Bsp19I CCATGG 1 cut(s) 1061
BspACI CCGC 4 cut(s) 108, 183, 593, 987
BspANI GGCC 5 cut(s) 168, 178, 356, 958, 1034
BspCNI CTCAG 5 cut(s) 249, 286, 358, 719, 756
BspEI TCCGGA 1 cut(s) 1026
BspLI GGNNCC 2 cut(s) 339, 386
BspPI GGATC 2 cut(s) 184, 664
BsrDI GCAATG 4 cut(s) 284, 438, 801, 835
BsrI ACTGG 2 cut(s) 385, 988
BssECI CCNNGG 1 cut(s) 1061
BssMI GATC 3 cut(s) 189, 656, 772
BssNI GRCGYC 2 cut(s) 257, 481
BssT1I CCWWGG 1 cut(s) 1061
Bst4CI ACNGT 5 cut(s) 10, 211, 305, 423, 587
BstACI GRCGYC 2 cut(s) 257, 481
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 4 cut(s) 166, 562, 744, 989
BstDEI CTNAG 6 cut(s) 236, 294, 345, 623, 706, 764
BstDSI CCRYGG 1 cut(s) 1061
BstF5I GGATG 4 cut(s) 141, 357, 828, 918
BstHHI GCGC 1 cut(s) 828
BstKTI GATC 3 cut(s) 192, 659, 775
BstMAI GTCTC 4 cut(s) 572, 843, 1000, 1077
BstMBI GATC 3 cut(s) 189, 656, 772
BstMWI GCNNNNNNNGC 4 cut(s) 124, 314, 716, 758
BstNSI RCATGY 3 cut(s) 644, 746, 995
BstSCI CCNGG 2 cut(s) 153, 958
BstV1I GCAGC 6 cut(s) 157, 173, 283, 505, 631, 778
BstXI CCANNNNNNTGG 1 cut(s) 50
BsuRI GGCC 5 cut(s) 168, 178, 356, 958, 1034
BtgI CCRYGG 1 cut(s) 1061
BtgZI GCGATG 1 cut(s) 662
BtsCI GGATG 4 cut(s) 141, 357, 828, 918
BtsI GCAGTG 2 cut(s) 659, 786
BtsIMutI CAGTG 5 cut(s) 659, 761, 786, 903, 981
Cac8I GCNNGC 4 cut(s) 166, 562, 744, 989
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 1 cut(s) 828
Cfr13I GGNCC 4 cut(s) 40, 385, 419, 1032
CseI GACGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 638, 916
CviAII CATG 7 cut(s) 44, 61, 641, 743, 753, 992, 1062
CviQI GTAC 2 cut(s) 638, 916
DdeI CTNAG 6 cut(s) 236, 294, 345, 623, 706, 764
DpnI GATC 3 cut(s) 191, 658, 774
DpnII GATC 3 cut(s) 189, 656, 772
DraIII CACNNNGTG 1 cut(s) 934
DrdI GACNNNNNNGTC 1 cut(s) 480
DseDI GACNNNNNNGTC 1 cut(s) 480
EaeI YGGCCR 2 cut(s) 166, 956
Eco130I CCWWGG 1 cut(s) 1061
Eco24I GRGCYC 1 cut(s) 464
Eco47I GGWCC 3 cut(s) 40, 385, 419
Eco57I CTGAAG 1 cut(s) 449
Eco88I CYCGRG 2 cut(s) 128, 803
EcoT14I CCWWGG 1 cut(s) 1061
EcoT38I GRGCYC 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 1061
FaeI CATG 7 cut(s) 47, 64, 644, 746, 756, 995, 1065
FaqI GGGAC 1 cut(s) 398
FatI CATG 7 cut(s) 43, 60, 640, 742, 752, 991, 1061
FauI CCCGC 3 cut(s) 190, 586, 980
Fnu4HI GCNGC 7 cut(s) 109, 146, 162, 272, 494, 645, 792
FokI GGATG 4 cut(s) 148, 364, 835, 905
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 7 cut(s) 109, 146, 162, 272, 494, 645, 792
FspBI CTAG 1 cut(s) 938
FspI TGCGCA 1 cut(s) 827
GlaI GCGC 1 cut(s) 827
GluI GCNGC 7 cut(s) 109, 146, 162, 272, 494, 645, 792
HaeIII GGCC 5 cut(s) 168, 178, 356, 958, 1034
HapII CCGG 3 cut(s) 155, 959, 1027
HgaI GACGC 1 cut(s) 265
HhaI GCGC 1 cut(s) 828
Hin1I GRCGYC 2 cut(s) 257, 481
Hin1II CATG 7 cut(s) 47, 64, 644, 746, 756, 995, 1065
Hin6I GCGC 1 cut(s) 826
HinP1I GCGC 1 cut(s) 826
HincII GTYRAC 1 cut(s) 1042
HindII GTYRAC 1 cut(s) 1042
HindIII AAGCTT 2 cut(s) 116, 951
HinfI GANTC 6 cut(s) 13, 298, 507, 799, 865, 1070
HpaII CCGG 3 cut(s) 155, 959, 1027
HphI GGTGA 4 cut(s) 16, 293, 823, 1031
Hpy166II GTNNAC 2 cut(s) 419, 1042
Hpy188I TCNGA 5 cut(s) 239, 330, 348, 864, 967
Hpy188III TCNNGA 8 cut(s) 38, 96, 130, 253, 293, 803, 922, 1027
Hpy8I GTNNAC 2 cut(s) 419, 1042
HpyAV CCTTC 7 cut(s) 236, 396, 424, 695, 781, 1016, 1060
HpyCH4III ACNGT 5 cut(s) 10, 211, 305, 423, 587
HpyCH4IV ACGT 2 cut(s) 409, 481
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 314, 716, 758
HpyF3I CTNAG 6 cut(s) 236, 294, 345, 623, 706, 764
HpySE526I ACGT 2 cut(s) 409, 481
Hsp92I GRCGYC 2 cut(s) 257, 481
Hsp92II CATG 7 cut(s) 47, 64, 644, 746, 756, 995, 1065
HspAI GCGC 1 cut(s) 826
Kpn2I TCCGGA 1 cut(s) 1026
Kzo9I GATC 3 cut(s) 189, 656, 772
LmnI GCTCC 1 cut(s) 30
Lsp1109I GCAGC 6 cut(s) 157, 173, 283, 505, 631, 778
LweI GCATC 1 cut(s) 813
MaeI CTAG 1 cut(s) 938
MaeII ACGT 2 cut(s) 409, 481
MaeIII GTNAC 6 cut(s) 4, 299, 405, 521, 850, 979
MalI GATC 3 cut(s) 191, 658, 774
MboI GATC 3 cut(s) 189, 656, 772
MboII GAAGA 2 cut(s) 85, 566
MhlI GDGCHC 1 cut(s) 464
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 2 cut(s) 86, 172
MluNI TGGCCA 1 cut(s) 168
MlyI GAGTC 4 cut(s) 307, 501, 793, 1079
MmeI TCCRAC 2 cut(s) 217, 634
Mox20I TGGCCA 1 cut(s) 168
MroI TCCGGA 1 cut(s) 1026
MscI TGGCCA 1 cut(s) 168
MslI CAYNNNNRTG 2 cut(s) 48, 1017
Msp20I TGGCCA 1 cut(s) 168
MspA1I CMGCKG 3 cut(s) 164, 185, 710
MspI CCGG 3 cut(s) 155, 959, 1027
MspR9I CCNGG 2 cut(s) 155, 960
Mva1269I GAATGC 3 cut(s) 27, 56, 719
MwoI GCNNNNNNNGC 4 cut(s) 124, 314, 716, 758
NciI CCSGG 2 cut(s) 155, 960
NcoI CCATGG 1 cut(s) 1061
NdeII GATC 3 cut(s) 189, 656, 772
NlaIII CATG 7 cut(s) 47, 64, 644, 746, 756, 995, 1065
NlaIV GGNNCC 2 cut(s) 339, 386
NmuCI GTSAC 5 cut(s) 4, 299, 521, 850, 979
NsbI TGCGCA 1 cut(s) 827
NspI RCATGY 3 cut(s) 644, 746, 995
OliI CACNNNNGTG 1 cut(s) 1017
PaeI GCATGC 1 cut(s) 746
PaeR7I CTCGAG 2 cut(s) 128, 803
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PctI GAATGC 3 cut(s) 27, 56, 719
PfeI GAWTC 2 cut(s) 13, 865
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 7 cut(s) 110, 147, 163, 273, 495, 646, 793
PleI GAGTC 4 cut(s) 306, 501, 793, 1078
PpsI GAGTC 4 cut(s) 306, 501, 793, 1078
PspN4I GGNNCC 2 cut(s) 339, 386
PspPI GGNCC 4 cut(s) 40, 385, 419, 1032
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
PstNI CAGNNNCTG 1 cut(s) 380
PvuII CAGCTG 2 cut(s) 164, 710
RsaI GTAC 2 cut(s) 639, 917
RsaNI GTAC 2 cut(s) 638, 916
RseI CAYNNNNRTG 2 cut(s) 48, 1017
SatI GCNGC 7 cut(s) 109, 146, 162, 272, 494, 645, 792
Sau3AI GATC 3 cut(s) 189, 656, 772
Sau96I GGNCC 4 cut(s) 40, 385, 419, 1032
SchI GAGTC 4 cut(s) 307, 501, 793, 1079
ScrFI CCNGG 2 cut(s) 155, 960
SduI GDGCHC 1 cut(s) 464
SfaNI GCATC 1 cut(s) 813
Sfr274I CTCGAG 2 cut(s) 128, 803
SinI GGWCC 3 cut(s) 40, 385, 419
SlaI CTCGAG 2 cut(s) 128, 803
SmiMI CAYNNNNRTG 2 cut(s) 48, 1017
SmlI CTYRAG 4 cut(s) 119, 128, 455, 803
SmoI CTYRAG 4 cut(s) 119, 128, 455, 803
SphI GCATGC 1 cut(s) 746
Sse9I AATT 2 cut(s) 86, 172
SsiI CCGC 4 cut(s) 108, 183, 593, 987
SspI AATATT 1 cut(s) 735
SspMI CTAG 1 cut(s) 938
StyD4I CCNGG 2 cut(s) 153, 958
StyI CCWWGG 1 cut(s) 1061
TaaI ACNGT 5 cut(s) 10, 211, 305, 423, 587
TaiI ACGT 2 cut(s) 412, 484
TaqI TCGA 3 cut(s) 95, 129, 804
TasI AATT 2 cut(s) 86, 172
TatI WGTACW 1 cut(s) 637
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 13, 865
TscAI CASTG 5 cut(s) 666, 768, 786, 910, 988
TseFI GTSAC 5 cut(s) 4, 299, 521, 850, 979
TseI GCWGC 6 cut(s) 145, 161, 271, 493, 644, 791
Tsp45I GTSAC 5 cut(s) 4, 299, 521, 850, 979
TspDTI ATGAA 2 cut(s) 49, 356
TspGWI ACGGA 2 cut(s) 835, 1059
TspRI CASTG 5 cut(s) 666, 768, 786, 910, 988
VpaK11BI GGWCC 3 cut(s) 40, 385, 419
XceI RCATGY 3 cut(s) 644, 746, 995
XhoI CTCGAG 2 cut(s) 128, 803
XspI CTAG 1 cut(s) 938
ZraI GACGTC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.