Rorug03G0183800

protein C4orf29 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013448
Physical Location & Seq
Reverse (-)
15817695 .. 15821265
3571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0183800.1

Sequence Viewer

Length: 834 bp
ATGGCGAACAAGATGAAGTTTTGGGGTGTTGAGGTAAAGAGTGGAGAGTCTATTGTTGTTGAACCTGGTATTACCCTTGTCCATCTTTCACAGGCCTGTCTGGATGAGGTCAAGAAAGGAAAGGGAAGTGATTCTATTTCACTCTTTGTGAAAACCGGTGATCAGAAGCTTGTTATTGGACATCTTTATGCTGATAAACTACCTCAGATATATTTTGATATTGTGTTTAATAAAAAATTTGTGCTATCTCATAATGGGAAAAGTGGGAGCGTCCACTTCCATGGATATATTGCTAATACAGGGACTTTTGGTACTGCCGAACCAAAGGTGAGTCTTGAGGAAGCTAAGAAAGAAATTAAATCTGATCAGAAGGATTCTAGTAGTGACGACGATGATGATGAATCTGAAGATGAAGAGTTTGATCAGGTCAAGAGTGTGGAAAATGGCAGTGAAGATGATGAAGAAAGTAGTGATGATGATGATGATGATAGTGAAGATGAAGATGATGACAGCGAAGAAGAGAATGAAGAGACTCCAAATAAGGTCGATGGGAGCAACAAACGTGCTGCTGAGAGTAGTAAAACACCTGTTCAAAAGAAGGCAAAGTTTGTTACTCCTGAAAAAACTAGTGGCAAGAAAGGAGCTGTCCACACAGCAACTCCTTACCCTTCAAAACAGGCTCTCAAAAAACCAGCTAATACTGACCAGACAAAGCTGCAGAGCTCAAAATCAAGTGGTGGTGGTGCATTCCGTTGTGATCCCTGCAATAGGTCGTTTAACTCAGATGGTGCACTGCAGAGTCATACAAAGGCAAAGCATGGAGCTGCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2048

Protein Analysis

277

Amino Acids

30.1

Weight (kDa)

4.93

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 7 - 97 9.4e-15 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12150
fragaria_vesca FvH4_6g22800
malus_domestica MD12G1062300.v1.1
prunus_persica Prupe.7G072500_v2.0.a1 Prupe.7G072500_v2.0.a1
pyrus_communis pycom12g05500 pycom14g05050
rosa_chinensis RchiOBHm_Chr3g0480421
rosa_laevigata RLG00000023483
rosa_multiflora Rmu_sc0002205.1_g000024
rosa_roxburghii Rroxscaffold_6G00401370
rosa_rugosa Rorug03G0183800 Rorug03G0183900
rosa_samantha Rh3AG235300 Rh3BG268200 Rh3CG265300 Rh3DG261200
rosa_wichuraiana Rw3G021120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 752
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 768
AgeI ACCGGT 1 cut(s) 155
AgsI TTSAA 3 cut(s) 62, 593, 672
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 7 cut(s) 169, 344, 644, 695, 715, 723, 824
AluI AGCT 7 cut(s) 169, 344, 644, 695, 715, 723, 824
Alw21I GWGCWC 2 cut(s) 725, 793
Alw26I GTCTC 1 cut(s) 524
Alw44I GTGCAC 1 cut(s) 789
AlwI GGATC 1 cut(s) 752
AoxI GGCC 1 cut(s) 93
ApaLI GTGCAC 1 cut(s) 789
ApeKI GCWGC 3 cut(s) 566, 715, 824
ApoI RAATTY 1 cut(s) 236
AsiGI ACCGGT 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 170, 340
BaeGI GKGCMC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 725
Bbv12I GWGCWC 2 cut(s) 725, 793
BbvI GCAGC 3 cut(s) 553, 702, 811
BccI CCATC 3 cut(s) 90, 542, 779
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 3 cut(s) 160, 364, 421
BcoDI GTCTC 1 cut(s) 524
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 2 cut(s) 378, 627
BfmI CTRYAG 2 cut(s) 716, 794
BisI GCNGC 3 cut(s) 567, 716, 825
BlsI GCNGC 3 cut(s) 568, 717, 826
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 768
Bse118I RCCGGY 1 cut(s) 155
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 768
BseMII CTCAG 3 cut(s) 218, 561, 795
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 3 cut(s) 553, 702, 811
BshFI GGCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 725, 793
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 768
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 746
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 725, 793
Bsp143I GATC 4 cut(s) 160, 364, 421, 757
Bsp19I CCATGG 1 cut(s) 280
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 3 cut(s) 217, 562, 794
BspMAI CTGCAG 2 cut(s) 720, 798
BspPI GGATC 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 4 cut(s) 160, 364, 421, 757
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 66
Bst6I CTCTTC 3 cut(s) 408, 513, 522
BstDEI CTNAG 4 cut(s) 204, 345, 570, 781
BstDSI CCRYGG 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 766
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 4 cut(s) 163, 367, 424, 760
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 4 cut(s) 160, 364, 421, 757
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 2 cut(s) 716, 794
BstSLI GKGCMC 1 cut(s) 793
BstV1I GCAGC 3 cut(s) 553, 702, 811
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 2 cut(s) 454, 791
BtsIMutI CAGTG 2 cut(s) 454, 791
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 1 cut(s) 259
CsiI ACCWGGT 1 cut(s) 64
Csp6I GTAC 1 cut(s) 312
CspAI ACCGGT 1 cut(s) 155
CviAII CATG 2 cut(s) 281, 818
CviJI RGCY 9 cut(s) 95, 169, 344, 644, 680, 695, 715, 723, 824
CviKI_1 RGCY 9 cut(s) 95, 169, 344, 644, 680, 695, 715, 723, 824
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 4 cut(s) 204, 345, 570, 781
DpnI GATC 4 cut(s) 162, 366, 423, 759
DpnII GATC 4 cut(s) 160, 364, 421, 757
Eam1104I CTCTTC 3 cut(s) 408, 513, 522
EarI CTCTTC 3 cut(s) 408, 513, 522
Ecl136II GAGCTC 1 cut(s) 723
Eco130I CCWWGG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 725
Eco53kI GAGCTC 1 cut(s) 723
Eco57I CTGAAG 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 723
EcoNI CCTNNNNNAGG 1 cut(s) 766
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 284, 821
FaiI YATR 7 cut(s) 189, 211, 252, 282, 288, 804, 819
FaqI GGGAC 1 cut(s) 316
FatI CATG 2 cut(s) 280, 817
FbaI TGATCA 3 cut(s) 160, 364, 421
Fnu4HI GCNGC 3 cut(s) 567, 716, 825
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 725
Fsp4HI GCNGC 3 cut(s) 567, 716, 825
FspBI CTAG 2 cut(s) 378, 627
GluI GCNGC 3 cut(s) 567, 716, 825
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 284, 821
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 7 cut(s) 47, 131, 331, 374, 401, 532, 799
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 170, 340
Hpy166II GTNNAC 3 cut(s) 274, 649, 791
Hpy188I TCNGA 6 cut(s) 165, 207, 364, 369, 406, 784
Hpy188III TCNNGA 5 cut(s) 101, 112, 335, 430, 617
Hpy8I GTNNAC 3 cut(s) 274, 649, 791
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 3 cut(s) 364, 592, 678
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 6 cut(s) 718, 746, 765, 791, 796, 827
HpyF3I CTNAG 4 cut(s) 204, 345, 570, 781
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 2 cut(s) 284, 821
Ksp22I TGATCA 3 cut(s) 160, 364, 421
Kzo9I GATC 4 cut(s) 160, 364, 421, 757
LmnI GCTCC 4 cut(s) 267, 552, 641, 821
Lsp1109I GCAGC 3 cut(s) 553, 702, 811
MabI ACCWGGT 1 cut(s) 64
MaeI CTAG 2 cut(s) 378, 627
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 2 cut(s) 383, 610
MalI GATC 4 cut(s) 162, 366, 423, 759
MboI GATC 4 cut(s) 160, 364, 421, 757
MboII GAAGA 9 cut(s) 419, 425, 464, 473, 506, 512, 527, 530, 539
MhlI GDGCHC 2 cut(s) 725, 793
MluCI AATT 2 cut(s) 236, 354
MlyI GAGTC 4 cut(s) 56, 340, 526, 808
MnlI CCTC 4 cut(s) 25, 100, 213, 331
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 3 cut(s) 228, 357, 777
MslI CAYNNNNRTG 2 cut(s) 186, 279
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 746
MvaI CCWGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 280
NdeII GATC 4 cut(s) 160, 364, 421, 757
NlaIII CATG 2 cut(s) 284, 821
NmuCI GTSAC 1 cut(s) 383
PceI AGGCCT 1 cut(s) 95
PctI GAATGC 1 cut(s) 746
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 3 cut(s) 131, 374, 401
PinAI ACCGGT 1 cut(s) 155
PkrI GCNGC 3 cut(s) 568, 717, 826
PleI GAGTC 4 cut(s) 55, 339, 526, 807
PpsI GAGTC 4 cut(s) 55, 339, 526, 807
Psp124BI GAGCTC 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PstI CTGCAG 2 cut(s) 720, 798
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 2 cut(s) 186, 279
SacI GAGCTC 1 cut(s) 725
SaqAI TTAA 3 cut(s) 228, 357, 777
SatI GCNGC 3 cut(s) 567, 716, 825
Sau3AI GATC 4 cut(s) 160, 364, 421, 757
SchI GAGTC 4 cut(s) 56, 340, 526, 808
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 2 cut(s) 725, 793
SexAI ACCWGGT 1 cut(s) 64
SfcI CTRYAG 2 cut(s) 716, 794
SmiMI CAYNNNNRTG 2 cut(s) 186, 279
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 2 cut(s) 236, 354
SseBI AGGCCT 1 cut(s) 95
SspMI CTAG 2 cut(s) 378, 627
SstI GAGCTC 1 cut(s) 725
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 280
TaiI ACGT 1 cut(s) 565
TaqI TCGA 1 cut(s) 546
TasI AATT 2 cut(s) 236, 354
TfiI GAWTC 3 cut(s) 131, 374, 401
Tru1I TTAA 3 cut(s) 228, 357, 777
Tru9I TTAA 3 cut(s) 228, 357, 777
TscAI CASTG 2 cut(s) 454, 798
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 3 cut(s) 566, 715, 824
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 6 cut(s) 29, 414, 426, 474, 513, 540
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 2 cut(s) 454, 798
VneI GTGCAC 1 cut(s) 789
XagI CCTNNNNNAGG 1 cut(s) 766
XapI RAATTY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 2 cut(s) 378, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.