Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016535

Physical Location & Seq

Genomic Coordinates Reverse (-)

3879276 .. 3880669

Gene Structure 1394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCTAATTTGTATGGAGATTATAACCAAAAGATCGATTACGTCTTCAAAGTCGTGTTGATCGGTGATTCTGCCGTTGGCAAAACTCAGCTTCTTGCTCGGTTCGCTAGGAATGAGTTTAGCGTCGATTCTAAAGCCACCATTGGTGTTGAATTCCAGACTAAAACGCTCGTCATTGATAACAAAACCGTCAAAGCTCAGATTTGGGATACTGCTGGCCAAGAAAGATATAGGGCGGTGACAAGTGCATACTACCGTGGAGCAGTTGGGGCAATGTTGGTCTACGACATGACCAAACGTCAATCATTCGATCACATGGCTAAATGGCTGGAAGAGTTACGAGGACATGCGGACAAGAACATAGTGATTATGCTAATTGGGAACAAATGTGATCTTGGAAGCCTAAGAGCAGTGCCAACAGAAGACGCACAAGAGTTTGCACAAAGAGAAAACTTGTTTTTCATGGAAACCTCTGCTCTAGAAGCTACCAATGTTGAAACAGCATTTTTGACCATCTTAACAGAGATCTACCGAATAATCAGCAAGAAATCACTAACGGCTGATGATGATGACGCCGATGGTAATTCAAGTCTCTTGAAAGGAACTAGAATCATCATCCCGAGCGAGCAAGAGAGTGGGAAAAGAGGTGGATGTTGCGGCAAATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0019899 GO:0019900 GO:0022414 GO:0022603 GO:0022604 GO:0030133 GO:0030154 GO:0030427 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0040008 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0070382 GO:0071840 GO:0080092 GO:0090404 GO:0090406 GO:0097708 GO:0099503 GO:0120025 GO:0120038 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

222

Amino Acids

24.72

Weight (kDa)

5.81

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 150	4.3e-14	ADP-ribosylation factor family
Ras	PF00071	17 - 177	1.6e-63	Ras family
Roc	PF08477	17 - 131	1.3e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	17 - 124	9.3e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12160
fragaria_vesca	FvH4_6g22850
malus_domestica	MD12G1062500.v1.1 MD14G1063200.v1.1
prunus_persica	Prupe.7G071600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480591
rosa_laevigata	RLG00000023465
rosa_multiflora	Rmu_sc0002205.1_g000059
rosa_roxburghii	Rroxscaffold_6G00401260
rosa_rugosa	Rorug03G0184300
rosa_samantha	Rh3AG236400 Rh3CG265900 Rh3DG261700
rosa_wichuraiana	Rw3G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	3 cut(s)	236, 350, 657
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	573
AgsI	TTSAA	5 cut(s)	49, 152, 497, 588, 598
AhdI	GACNNNNNGTC	1 cut(s)	297
AluBI	AGCT	3 cut(s)	91, 197, 485
AluI	AGCT	3 cut(s)	91, 197, 485
Alw26I	GTCTC	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	619
AoxI	GGCC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	77, 250
AvaI	CYCGRG	1 cut(s)	619
BalI	TGGCCA	1 cut(s)	219
BbsI	GAAGAC	2 cut(s)	37, 429
BccI	CCATC	2 cut(s)	521, 572
BceAI	ACGGC	2 cut(s)	59, 573
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	596
BfaI	CTAG	3 cut(s)	108, 479, 606
BfuI	GTATCC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	1 cut(s)	658
BlsI	GCNGC	1 cut(s)	659
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	619
BpiI	GAAGAC	2 cut(s)	37, 429
Bsa29I	ATCGAT	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	2 cut(s)	615, 656
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	101, 212
BshFI	GGCC	1 cut(s)	219
BshVI	ATCGAT	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	619
BsmAI	GTCTC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	619
Bsp143I	GATC	5 cut(s)	33, 60, 310, 391, 525
BspACI	CCGC	3 cut(s)	236, 350, 657
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	100, 211
BspDI	ATCGAT	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	5 cut(s)	33, 60, 310, 391, 525
BssNI	GRCGYC	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	190, 257
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	573
BstC8I	GCNNGC	2 cut(s)	217, 626
BstDEI	CTNAG	3 cut(s)	87, 198, 404
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	615, 656
BstKTI	GATC	5 cut(s)	36, 63, 313, 394, 528
BstMAI	GTCTC	1 cut(s)	596
BstMBI	GATC	5 cut(s)	33, 60, 310, 391, 525
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 269, 482
BstNSI	RCATGY	1 cut(s)	350
BstV2I	GAAGAC	2 cut(s)	37, 429
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
Bsu15I	ATCGAT	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	615, 656
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	2 cut(s)	217, 626
ClaI	ATCGAT	1 cut(s)	36
CseI	GACGC	3 cut(s)	112, 434, 581
CviAII	CATG	4 cut(s)	289, 316, 347, 463
CviJI	RGCY	9 cut(s)	91, 137, 197, 219, 320, 328, 402, 485, 560
CviKI_1	RGCY	9 cut(s)	91, 137, 197, 219, 320, 328, 402, 485, 560
DdeI	CTNAG	3 cut(s)	87, 198, 404
DpnI	GATC	5 cut(s)	35, 62, 312, 393, 527
DpnII	GATC	5 cut(s)	33, 60, 310, 391, 525
DriI	GACNNNNNGTC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	327
Eam1105I	GACNNNNNGTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	152
FaeI	CATG	4 cut(s)	292, 319, 350, 466
FatI	CATG	4 cut(s)	288, 315, 346, 462
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	658
FokI	GGATG	2 cut(s)	602, 663
Fsp4HI	GCNGC	1 cut(s)	658
FspBI	CTAG	3 cut(s)	108, 479, 606
GluI	GCNGC	1 cut(s)	658
HaeIII	GGCC	1 cut(s)	219
HgaI	GACGC	3 cut(s)	112, 434, 581
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	4 cut(s)	292, 319, 350, 466
HinfI	GANTC	3 cut(s)	68, 128, 609
HphI	GGTGA	2 cut(s)	77, 250
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	4 cut(s)	157, 479, 595, 619
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4III	ACNGT	2 cut(s)	190, 257
HpyCH4IV	ACGT	2 cut(s)	42, 298
HpyCH4V	TGCA	2 cut(s)	248, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 269, 482
HpyF3I	CTNAG	3 cut(s)	87, 198, 404
HpySE526I	ACGT	2 cut(s)	42, 298
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	4 cut(s)	292, 319, 350, 466
Kzo9I	GATC	5 cut(s)	33, 60, 310, 391, 525
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	3 cut(s)	170, 201, 314
MaeI	CTAG	3 cut(s)	108, 479, 606
MaeII	ACGT	2 cut(s)	42, 298
MaeIII	GTNAC	2 cut(s)	238, 336
MalI	GATC	5 cut(s)	35, 62, 312, 393, 527
MboI	GATC	5 cut(s)	33, 60, 310, 391, 525
MboII	GAAGA	3 cut(s)	37, 344, 434
MflI	RGATCY	1 cut(s)	525
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	4 cut(s)	7, 152, 375, 583
MluNI	TGGCCA	1 cut(s)	219
MnlI	CCTC	3 cut(s)	335, 481, 638
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	104, 269, 482
NdeII	GATC	5 cut(s)	33, 60, 310, 391, 525
NlaIII	CATG	4 cut(s)	292, 319, 350, 466
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	68, 128, 609
PkrI	GCNGC	1 cut(s)	659
PsiI	TTATAA	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	1 cut(s)	658
Sau3AI	GATC	5 cut(s)	33, 60, 310, 391, 525
SetI	ASST	7 cut(s)	45, 93, 199, 301, 473, 487, 649
Sse9I	AATT	4 cut(s)	7, 152, 375, 583
SsiI	CCGC	3 cut(s)	236, 350, 657
SspMI	CTAG	3 cut(s)	108, 479, 606
TaaI	ACNGT	2 cut(s)	190, 257
TaiI	ACGT	2 cut(s)	45, 301
TaqI	TCGA	3 cut(s)	36, 126, 309
TasI	AATT	4 cut(s)	7, 152, 375, 583
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	3 cut(s)	68, 128, 609
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	152
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	3 cut(s)	108, 479, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.