Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016535

Physical Location & Seq

Genomic Coordinates Reverse (-)

26011921 .. 26014381

Gene Structure 2461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG261700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGAATATGTATGGTGATTATAACCAGAAGATTGATTATGTGTTCAAAGTGGTGTTGATCGGAGACTCGGCGGTTGGGAAAACACAGCTCCTCGCACGATTTGCAAGAAATGAATTCAGTTTAGACTCCAAAGCCACAATCGGAGTCGAATTTCAGACGAAAACACTTGTTCTTGATAACAAGACCGTTAAGGCGCAGATTTGGGATACTGCTGGCCAAGAAAGGTATAGAGCAGTCACGAGTGCATACTACCGAGGTGCAGTCGGAGCAATGTTGGTGTATGACATGACCAAGCGTCAATCTTTTGACCACATGGCTAGGTGGTTGGAGGAATTAAGGGGGCATGCTGATAAGAACATTGTTATAATGCTCATCGGCAACAAATGTGACTTGGGAAGTCTTCGAGCAGTGCCAACTGAAGATGCACAGGAGTTCGCTCAAAGAGAGAACCTATTCTTTATGGAGACATCTGCTCTTCAGGCTACCAATGTTGAAACAGCATTTTTAATGATTTTAAGGGAGATATATCGAATAATGAGCAAGAAGACCCTTGCTGCTAATGAGGCAGATGGTGGGGATTCAGGGCTCCTTAAGGGGACTGCAATTACTGTTCCTAGTCCAGAACCGGCTGGTGCCCAGAAGGGTGGCTGCTGCTTTGCCTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0019899 GO:0019900 GO:0022414 GO:0022603 GO:0022604 GO:0030133 GO:0030154 GO:0030427 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0040008 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0070382 GO:0071840 GO:0080092 GO:0090404 GO:0090406 GO:0097708 GO:0099503 GO:0120025 GO:0120038 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

223

Amino Acids

24.65

Weight (kDa)

6.74

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 152	1.1e-13	ADP-ribosylation factor family
Ras	PF00071	17 - 177	2.4e-63	Ras family
Roc	PF08477	17 - 131	3.4e-35	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12160
fragaria_vesca	FvH4_6g22850
malus_domestica	MD12G1062500.v1.1 MD14G1063200.v1.1
prunus_persica	Prupe.7G071600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480591
rosa_laevigata	RLG00000023465
rosa_multiflora	Rmu_sc0002205.1_g000059
rosa_roxburghii	Rroxscaffold_6G00401260
rosa_rugosa	Rorug03G0184300
rosa_samantha	Rh3AG236400 Rh3CG265900 Rh3DG261700
rosa_wichuraiana	Rw3G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	24, 368
AccB1I	GGYRCC	1 cut(s)	635
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	116, 152
AcuI	CTGAAG	2 cut(s)	441, 464
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	2 cut(s)	49, 497
AhdI	GACNNNNNGTC	1 cut(s)	297
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	60, 461
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	557, 651, 654
ApoI	RAATTY	2 cut(s)	116, 152
Asp700I	GAANNNNTTC	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	591
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	2 cut(s)	395, 554
BbvI	GCAGC	3 cut(s)	544, 638, 641
BccI	CCATC	1 cut(s)	566
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	60, 461
BfaI	CTAG	2 cut(s)	321, 618
BfrI	CTTAAG	1 cut(s)	593
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	558, 652, 655
BlsI	GCNGC	3 cut(s)	559, 653, 656
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmiI	GGNNCC	2 cut(s)	590, 637
BmsI	GCATC	1 cut(s)	415
BpiI	GAAGAC	2 cut(s)	395, 554
BsaJI	CCNNGG	1 cut(s)	256
Bse118I	RCCGGY	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	3 cut(s)	544, 638, 641
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	613
BsmAI	GTCTC	2 cut(s)	60, 461
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	591, 640
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	590, 637
BspQI	GCTCTTC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	635
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	190, 613
Bst6I	CTCTTC	1 cut(s)	483
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	217, 348
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	2 cut(s)	60, 461
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 269, 482, 566
BstNSI	RCATGY	1 cut(s)	350
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	3 cut(s)	544, 638, 641
BstV2I	GAAGAC	2 cut(s)	395, 554
BstXI	CCANNNNNNTGG	1 cut(s)	647
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	2 cut(s)	217, 348
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	628
CseI	GACGC	1 cut(s)	287
CviAII	CATG	3 cut(s)	289, 316, 347
CviJI	RGCY	8 cut(s)	91, 137, 219, 320, 485, 589, 632, 651
CviKI_1	RGCY	8 cut(s)	91, 137, 219, 320, 485, 589, 632, 651
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DriI	GACNNNNNGTC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	483
Eam1105I	GACNNNNNGTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	591
Eco57I	CTGAAG	2 cut(s)	441, 464
EcoRI	GAATTC	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	3 cut(s)	292, 319, 350
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	3 cut(s)	288, 315, 346
Fnu4HI	GCNGC	3 cut(s)	558, 652, 655
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	3 cut(s)	558, 652, 655
FspBI	CTAG	2 cut(s)	321, 618
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	3 cut(s)	558, 652, 655
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	629
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	292, 319, 350
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	4 cut(s)	68, 128, 147, 581
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	1 cut(s)	29
Hpy188I	TCNGA	4 cut(s)	65, 146, 159, 269
Hpy188III	TCNNGA	3 cut(s)	176, 241, 623
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	2 cut(s)	190, 613
HpyCH4V	TGCA	5 cut(s)	107, 248, 263, 428, 605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 269, 482, 566
Hsp92II	CATG	3 cut(s)	292, 319, 350
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	3 cut(s)	96, 269, 594
LpnPI	CCDG	9 cut(s)	41, 201, 416, 467, 570, 618, 636, 642, 653
Lsp1109I	GCAGC	3 cut(s)	544, 638, 641
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	321, 618
MaeIII	GTNAC	2 cut(s)	238, 389
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	6 cut(s)	43, 395, 434, 470, 559, 657
MhlI	GDGCHC	2 cut(s)	591, 640
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	4 cut(s)	116, 152, 335, 606
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	62, 122, 156
MmeI	TCCRAC	2 cut(s)	247, 309
MnlI	CCTC	4 cut(s)	104, 251, 325, 559
Mox20I	TGGCCA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	5 cut(s)	192, 338, 509, 518, 594
Msp20I	TGGCCA	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	4 cut(s)	104, 269, 482, 566
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	3 cut(s)	292, 319, 350
NlaIV	GGNNCC	2 cut(s)	590, 637
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	238, 389
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	3 cut(s)	559, 653, 656
PleI	GAGTC	3 cut(s)	62, 122, 155
PpsI	GAGTC	3 cut(s)	62, 122, 155
PsiI	TTATAA	2 cut(s)	24, 368
PspN4I	GGNNCC	2 cut(s)	590, 637
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	5 cut(s)	192, 338, 509, 518, 594
SatI	GCNGC	3 cut(s)	558, 652, 655
Sau3AI	GATC	1 cut(s)	60
SchI	GAGTC	3 cut(s)	62, 122, 156
SduI	GDGCHC	2 cut(s)	591, 640
SetI	ASST	5 cut(s)	93, 230, 262, 326, 456
SfaNI	GCATC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	4 cut(s)	116, 152, 335, 606
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	321, 618
TaaI	ACNGT	2 cut(s)	190, 613
TaqI	TCGA	4 cut(s)	5, 150, 406, 532
TasI	AATT	4 cut(s)	116, 152, 335, 606
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	5 cut(s)	192, 338, 509, 518, 594
Tru9I	TTAA	5 cut(s)	192, 338, 509, 518, 594
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	2 cut(s)	238, 389
TseI	GCWGC	3 cut(s)	557, 651, 654
Tsp45I	GTSAC	2 cut(s)	238, 389
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	417
Vha464I	CTTAAG	1 cut(s)	593
XapI	RAATTY	2 cut(s)	116, 152
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	2 cut(s)	321, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.