Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016535

Physical Location & Seq

Genomic Coordinates Reverse (-)

26098963 .. 26101411

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG265900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTATGGTGATTATAACCAGAAGATTGATTATGTGTTCAAAGTGGTGTTGATCGGAGACTCGGCGGTTGGGAAAACACAGCTCCTCGCACGATTTGCAAGAAATGAATTCAGTTTGGACTCTAAAGCCACAATCGGAGTCGAATTTCAGACGAAAACACTTGTTCTTGATAACAAGACCGTTAAGGCGCAGATTTGGGATACTGCTGGCCAAGAAAGGTATAGAGCAGTCACGAGTGCATACTACCGAGGTGCAGTCGGAGCAATGTTGGTGTATGACATGACCAAGCGTCAATCTTTTGACCACATGGCTAGGTGGTTGGAGGAATTAAGGGGGCATGCTGATAAGAACATTGTTATAATGCTCATCGGCAACAAATGTGACTTGGGAAGTCTTCGAGCAGTGCCAACTGAAGATGCACAGGAGTTCGCTCAAAGAGAGAACCTATTCTTTATGGAGACATCTGCTCTTCAGGCTACCAATGTTGAAACAGCATTTTTAATGATTTTAAGGGAGATATATCGAATAATGAGCAAGAAGACCCTTGCTGCTAATGAGGCAGATGGTGGGGATTCAGGTCTCCTTAAGGGGACTGCAATTACTGTTCCTAGTCCAGAACCGGCTGGTGCCCAGAAGGGTGGCTGCTGCTTTGCCTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0019899 GO:0019900 GO:0022414 GO:0022603 GO:0022604 GO:0030133 GO:0030154 GO:0030427 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0040008 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0070382 GO:0071840 GO:0080092 GO:0090404 GO:0090406 GO:0097708 GO:0099503 GO:0120025 GO:0120038 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

220

Amino Acids

24.32

Weight (kDa)

6.74

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	12 - 149	1.2e-13	ADP-ribosylation factor family
Ras	PF00071	14 - 174	2.3e-63	Ras family
Roc	PF08477	14 - 128	3.3e-35	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12160
fragaria_vesca	FvH4_6g22850
malus_domestica	MD12G1062500.v1.1 MD14G1063200.v1.1
prunus_persica	Prupe.7G071600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480591
rosa_laevigata	RLG00000023465
rosa_multiflora	Rmu_sc0002205.1_g000059
rosa_roxburghii	Rroxscaffold_6G00401260
rosa_rugosa	Rorug03G0184300
rosa_samantha	Rh3AG236400 Rh3CG265900 Rh3DG261700
rosa_wichuraiana	Rw3G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	15, 359
AccB1I	GGYRCC	1 cut(s)	626
AciI	CCGC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	107, 143
AcuI	CTGAAG	2 cut(s)	432, 455
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	2 cut(s)	40, 488
AhdI	GACNNNNNGTC	1 cut(s)	288
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw26I	GTCTC	3 cut(s)	51, 452, 584
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	548, 642, 645
ApoI	RAATTY	2 cut(s)	107, 143
Asp700I	GAANNNNTTC	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	626
BauI	CACGAG	1 cut(s)	232
BbsI	GAAGAC	2 cut(s)	386, 545
BbvI	GCAGC	3 cut(s)	535, 629, 632
BccI	CCATC	1 cut(s)	557
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	3 cut(s)	51, 452, 584
BfaI	CTAG	2 cut(s)	312, 609
BfrI	CTTAAG	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	3 cut(s)	549, 643, 646
BlsI	GCNGC	3 cut(s)	550, 644, 647
BmeRI	GACNNNNNGTC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	628
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	2 cut(s)	386, 545
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	619
Bse3DI	GCAATG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	3 cut(s)	535, 629, 632
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	626
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	604
BsmAI	GTCTC	3 cut(s)	51, 452, 584
BsmFI	GGGAC	1 cut(s)	604
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	628
BspQI	GCTCTTC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	626
BspTI	CTTAAG	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	619
BssAI	RCCGGY	1 cut(s)	619
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	181, 604
Bst6I	CTCTTC	1 cut(s)	474
BstAFI	CTTAAG	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	208, 339
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	3 cut(s)	51, 452, 584
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 260, 473, 557
BstNSI	RCATGY	1 cut(s)	341
BstSLI	GKGCMC	1 cut(s)	631
BstV1I	GCAGC	3 cut(s)	535, 629, 632
BstV2I	GAAGAC	2 cut(s)	386, 545
BstXI	CCANNNNNNTGG	1 cut(s)	638
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	208, 339
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	619
CseI	GACGC	1 cut(s)	278
CviAII	CATG	3 cut(s)	280, 307, 338
CviJI	RGCY	7 cut(s)	82, 128, 210, 311, 476, 623, 642
CviKI_1	RGCY	7 cut(s)	82, 128, 210, 311, 476, 623, 642
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DriI	GACNNNNNGTC	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	474
Eam1105I	GACNNNNNGTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	584
Eco57I	CTGAAG	2 cut(s)	432, 455
EcoRI	GAATTC	1 cut(s)	107
FaeI	CATG	3 cut(s)	283, 310, 341
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	3 cut(s)	279, 306, 337
Fnu4HI	GCNGC	3 cut(s)	549, 643, 646
Fsp4HI	GCNGC	3 cut(s)	549, 643, 646
FspBI	CTAG	2 cut(s)	312, 609
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	3 cut(s)	549, 643, 646
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	283, 310, 341
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	4 cut(s)	59, 119, 138, 572
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	56, 137, 150, 260
Hpy188III	TCNNGA	3 cut(s)	167, 232, 614
HpyAV	CCTTC	1 cut(s)	628
HpyCH4III	ACNGT	2 cut(s)	181, 604
HpyCH4V	TGCA	5 cut(s)	98, 239, 254, 419, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 260, 473, 557
Hsp92II	CATG	3 cut(s)	283, 310, 341
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	51
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	87, 260
LpnPI	CCDG	9 cut(s)	32, 192, 407, 458, 561, 609, 627, 633, 644
Lsp1109I	GCAGC	3 cut(s)	535, 629, 632
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	2 cut(s)	312, 609
MaeIII	GTNAC	2 cut(s)	229, 380
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	6 cut(s)	34, 386, 425, 461, 550, 648
MhlI	GDGCHC	1 cut(s)	631
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	4 cut(s)	107, 143, 326, 597
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	3 cut(s)	53, 113, 147
MmeI	TCCRAC	2 cut(s)	238, 300
MnlI	CCTC	4 cut(s)	95, 242, 316, 550
Mox20I	TGGCCA	1 cut(s)	210
MroXI	GAANNNNTTC	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	5 cut(s)	183, 329, 500, 509, 585
Msp20I	TGGCCA	1 cut(s)	210
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	4 cut(s)	95, 260, 473, 557
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	3 cut(s)	283, 310, 341
NlaIV	GGNNCC	1 cut(s)	628
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	2 cut(s)	229, 380
NspI	RCATGY	1 cut(s)	341
PaeI	GCATGC	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	3 cut(s)	550, 644, 647
PleI	GAGTC	3 cut(s)	53, 113, 146
PpsI	GAGTC	3 cut(s)	53, 113, 146
PsiI	TTATAA	2 cut(s)	15, 359
PspN4I	GGNNCC	1 cut(s)	628
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	5 cut(s)	183, 329, 500, 509, 585
SatI	GCNGC	3 cut(s)	549, 643, 646
Sau3AI	GATC	1 cut(s)	51
SchI	GAGTC	3 cut(s)	53, 113, 147
SduI	GDGCHC	1 cut(s)	631
SetI	ASST	6 cut(s)	84, 221, 253, 317, 447, 580
SfaNI	GCATC	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SphI	GCATGC	1 cut(s)	341
Sse9I	AATT	4 cut(s)	107, 143, 326, 597
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	2 cut(s)	312, 609
TaaI	ACNGT	2 cut(s)	181, 604
TaqI	TCGA	3 cut(s)	141, 397, 523
TasI	AATT	4 cut(s)	107, 143, 326, 597
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	5 cut(s)	183, 329, 500, 509, 585
Tru9I	TTAA	5 cut(s)	183, 329, 500, 509, 585
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	229, 380
TseI	GCWGC	3 cut(s)	548, 642, 645
Tsp45I	GTSAC	2 cut(s)	229, 380
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	408
Vha464I	CTTAAG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	107, 143
XceI	RCATGY	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	2 cut(s)	312, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.