Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016535

Physical Location & Seq

Genomic Coordinates Forward (+)

23571736 .. 23574314

Gene Structure 2579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCGAATATGTATGGTGATTATAACCAGAAGATTGATTATGTGTTCAAAGTGGTGTTGATCGGAGACTCGGCGGTTGGGAAAACACAGCTTCTCGCACGATTTGCAAGAAATGAATTCAGTTTAGACTCCAAAGCCACAATCGGAGTCGAATTTCAGACGAAAACACTTGTTCTTGATAACAAGACCGTTAAGGCGCAGATTTGGGATACTGCTGGCCAAGAAAGAGAAAAATCTGTCACCTTAAGATGTCCATTTGCTTTTGCTTCATCACCTTCAAGTACAACCTCCAATCTCATCTGGCTTCCCTCTATTTGCATTCCCAACTTCTACTCTGGTCTTGCTGTTGATTCTGCTAGTCCATCATTCTTTCTCACTCTTCCTTCACTCTGCCACCCAATTCTTAGTATGTACAGAGCAGTCACGAGTGCATACTACCGAGGTGCAGTCGGAGCAATGTTGGTGTATGACATGACCAAGCGTCAATCCTTTGACCACATGGCTAGGTGGTTGGAGGAATTAAGGGGGCATGCTGATAAGAACATTGTTATAATGCTCATCGGCAACAAATGTGACTTGGGAAGTCTTCGAGCAGTGCCAACTGAAGATGCTCAGGAGTTCGCTCAAAGAGAGAACCTATTCTTTATGGAGACATCTGCTCTTCAGGCTACCAATGTTGAAACAGCATTTTTAATGATTTTAAGGGAGATATATCGAATAATGAGCAAGAAGACCCTCGCTGCTAATGAGGCAGATGGTGGGGATTCAGGGCTCCTTAAGGGGACTGCAATTACTGTTCCTAGTCAAGAACCGGCTGGTGCCCAGAAGGGTGGCTGCTGCTTTGCCTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0019899 GO:0019900 GO:0022414 GO:0022603 GO:0022604 GO:0030133 GO:0030154 GO:0030427 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0040008 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0070382 GO:0071840 GO:0080092 GO:0090404 GO:0090406 GO:0097708 GO:0099503 GO:0120025 GO:0120038 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

284

Amino Acids

31.21

Weight (kDa)

6.83

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	17 - 81	2.1e-22	Ras family
Roc	PF08477	17 - 80	8e-19	Ras of Complex, Roc, domain of DAPkinase
Roc	PF08477	137 - 192	1.1e-08	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	138 - 238	1.2e-32	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12160
fragaria_vesca	FvH4_6g22850
malus_domestica	MD12G1062500.v1.1 MD14G1063200.v1.1
prunus_persica	Prupe.7G071600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480591
rosa_laevigata	RLG00000023465
rosa_multiflora	Rmu_sc0002205.1_g000059
rosa_roxburghii	Rroxscaffold_6G00401260
rosa_rugosa	Rorug03G0184300
rosa_samantha	Rh3AG236400 Rh3CG265900 Rh3DG261700
rosa_wichuraiana	Rw3G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	24, 551
AccB1I	GGYRCC	1 cut(s)	818
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	116, 152
AcuI	CTGAAG	2 cut(s)	624, 647
AfaI	GTAC	2 cut(s)	283, 413
AflII	CTTAAG	2 cut(s)	244, 776
AgsI	TTSAA	3 cut(s)	49, 279, 680
AhdI	GACNNNNNGTC	1 cut(s)	480
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	60, 644
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	740, 834, 837
ApoI	RAATTY	2 cut(s)	116, 152
Asp700I	GAANNNNTTC	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	3 cut(s)	29, 232, 264
BaeGI	GKGCMC	1 cut(s)	823
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	1 cut(s)	774
BauI	CACGAG	1 cut(s)	424
BbsI	GAAGAC	2 cut(s)	578, 737
BbvI	GCAGC	3 cut(s)	727, 821, 824
BccI	CCATC	2 cut(s)	370, 749
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	60, 644
BfaI	CTAG	3 cut(s)	357, 504, 801
BfrI	CTTAAG	2 cut(s)	244, 776
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	741, 835, 838
BlsI	GCNGC	3 cut(s)	742, 836, 839
BmeRI	GACNNNNNGTC	1 cut(s)	480
BmiI	GGNNCC	2 cut(s)	773, 820
BmsI	GCATC	1 cut(s)	598
BpiI	GAAGAC	2 cut(s)	578, 737
Bpu10I	CCTNAGC	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	811
Bse3DI	GCAATG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	823
BseXI	GCAGC	3 cut(s)	727, 821, 824
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	818
BsiSI	CCGG	1 cut(s)	812
BslFI	GGGAC	1 cut(s)	796
BsmAI	GTCTC	2 cut(s)	60, 644
BsmFI	GGGAC	1 cut(s)	796
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	774, 823
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	773, 820
BspQI	GCTCTTC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	818
BspTI	CTTAAG	2 cut(s)	244, 776
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	811
BsrGI	TGTACA	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	811
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	424
Bst2BI	CACGAG	1 cut(s)	424
Bst4CI	ACNGT	2 cut(s)	190, 796
Bst6I	CTCTTC	2 cut(s)	384, 666
BstAFI	CTTAAG	2 cut(s)	244, 776
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstAUI	TGTACA	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	217, 531
BstDEI	CTNAG	2 cut(s)	404, 612
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	2 cut(s)	60, 644
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 452, 665, 749
BstNSI	RCATGY	1 cut(s)	533
BstSLI	GKGCMC	1 cut(s)	823
BstV1I	GCAGC	3 cut(s)	727, 821, 824
BstV2I	GAAGAC	2 cut(s)	578, 737
BstXI	CCANNNNNNTGG	1 cut(s)	830
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	217, 531
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	811
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	282, 412
CviAII	CATG	3 cut(s)	472, 499, 530
CviJI	RGCY	9 cut(s)	91, 137, 219, 304, 503, 668, 772, 815, 834
CviKI_1	RGCY	9 cut(s)	91, 137, 219, 304, 503, 668, 772, 815, 834
CviQI	GTAC	2 cut(s)	282, 412
DdeI	CTNAG	2 cut(s)	404, 612
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DriI	GACNNNNNGTC	1 cut(s)	480
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	384, 666
Eam1105I	GACNNNNNGTC	1 cut(s)	480
EarI	CTCTTC	2 cut(s)	384, 666
Eco24I	GRGCYC	1 cut(s)	774
Eco57I	CTGAAG	2 cut(s)	624, 647
EcoRI	GAATTC	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	774
FaeI	CATG	3 cut(s)	475, 502, 533
FaqI	GGGAC	1 cut(s)	796
FatI	CATG	3 cut(s)	471, 498, 529
Fnu4HI	GCNGC	3 cut(s)	741, 835, 838
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	3 cut(s)	741, 835, 838
FspBI	CTAG	3 cut(s)	357, 504, 801
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	3 cut(s)	741, 835, 838
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	812
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	475, 502, 533
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	5 cut(s)	68, 128, 147, 350, 764
HpaII	CCGG	1 cut(s)	812
HphI	GGTGA	3 cut(s)	29, 232, 264
Hpy188I	TCNGA	4 cut(s)	65, 146, 159, 452
Hpy188III	TCNNGA	4 cut(s)	176, 424, 614, 806
HpyAV	CCTTC	3 cut(s)	285, 393, 820
HpyCH4III	ACNGT	2 cut(s)	190, 796
HpyCH4V	TGCA	5 cut(s)	107, 318, 431, 446, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 452, 665, 749
HpyF3I	CTNAG	2 cut(s)	404, 612
Hsp92II	CATG	3 cut(s)	475, 502, 533
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	452, 777
Lsp1109I	GCAGC	3 cut(s)	727, 821, 824
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	3 cut(s)	357, 504, 801
MaeIII	GTNAC	3 cut(s)	238, 421, 572
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	7 cut(s)	43, 371, 578, 617, 653, 742, 840
MhlI	GDGCHC	2 cut(s)	774, 823
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	5 cut(s)	116, 152, 399, 518, 789
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	62, 122, 156
MmeI	TCCRAC	2 cut(s)	430, 492
MnlI	CCTC	6 cut(s)	298, 319, 434, 508, 742, 746
Mox20I	TGGCCA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	638
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	6 cut(s)	192, 245, 521, 692, 701, 777
Msp20I	TGGCCA	1 cut(s)	219
MspCI	CTTAAG	2 cut(s)	244, 776
MspI	CCGG	1 cut(s)	812
Mva1269I	GAATGC	1 cut(s)	318
MwoI	GCNNNNNNNGC	4 cut(s)	104, 452, 665, 749
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	3 cut(s)	475, 502, 533
NlaIV	GGNNCC	2 cut(s)	773, 820
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	3 cut(s)	238, 421, 572
NspI	RCATGY	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	533
PciSI	GCTCTTC	1 cut(s)	666
PctI	GAATGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	2 cut(s)	350, 764
PkrI	GCNGC	3 cut(s)	742, 836, 839
PleI	GAGTC	3 cut(s)	62, 122, 155
PpsI	GAGTC	3 cut(s)	62, 122, 155
PsiI	TTATAA	2 cut(s)	24, 551
PspN4I	GGNNCC	2 cut(s)	773, 820
RsaI	GTAC	2 cut(s)	283, 413
RsaNI	GTAC	2 cut(s)	282, 412
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	6 cut(s)	192, 245, 521, 692, 701, 777
SatI	GCNGC	3 cut(s)	741, 835, 838
Sau3AI	GATC	1 cut(s)	60
SchI	GAGTC	3 cut(s)	62, 122, 156
SduI	GDGCHC	2 cut(s)	774, 823
SetI	ASST	7 cut(s)	93, 245, 277, 290, 445, 509, 639
SfaNI	GCATC	1 cut(s)	598
SmlI	CTYRAG	2 cut(s)	244, 776
SmoI	CTYRAG	2 cut(s)	244, 776
SphI	GCATGC	1 cut(s)	533
Sse9I	AATT	5 cut(s)	116, 152, 399, 518, 789
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	3 cut(s)	357, 504, 801
TaaI	ACNGT	2 cut(s)	190, 796
TaqI	TCGA	4 cut(s)	5, 150, 589, 715
TasI	AATT	5 cut(s)	116, 152, 399, 518, 789
TatI	WGTACW	2 cut(s)	281, 411
TfiI	GAWTC	2 cut(s)	350, 764
Tru1I	TTAA	6 cut(s)	192, 245, 521, 692, 701, 777
Tru9I	TTAA	6 cut(s)	192, 245, 521, 692, 701, 777
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	3 cut(s)	238, 421, 572
TseI	GCWGC	3 cut(s)	740, 834, 837
Tsp45I	GTSAC	3 cut(s)	238, 421, 572
TspDTI	ATGAA	2 cut(s)	129, 258
TspRI	CASTG	1 cut(s)	600
Vha464I	CTTAAG	2 cut(s)	244, 776
XapI	RAATTY	2 cut(s)	116, 152
XceI	RCATGY	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	3 cut(s)	357, 504, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.