Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016535

Physical Location & Seq

Genomic Coordinates Forward (+)

10909129 .. 10911641

Gene Structure 2513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCGAATTTGTACGGAGATTACAATCAGAAAATTGATTATGTGTTCAAAGTGGTGTTGATTGGAGACTCCGCGGTTGGAAAAACACAGCTGCTCGCGCGCTTTGCTAGAAATGAGTTCAGTGTGGACTCGAAAGCCACAATCGGGGTCGAATTTCAGACGAAAACTCTTGTTCTCGATCACAAGACGGTGAAGGCGCAGATTTGGGACACTGCTGGCCAAGAAAGGTACAGAGCTGTCACGAGTGCCTACTACCGAGGCGCAGTCGGAGCAATGCTGGTTTATGACATGACAAAGCGCCAATCATTTGATCACATGGCTAGGTGGTTGGAGGAATTAAGGGGCCATGCTGATAAGAACATTGTTATTATGCTCATCGGCAACAAATGCGACTTGGGAAGTCTCCGAGCAGTGCCAACTGAAGATGCACAGGAGTTTGCTCAAAGAGAGAACCTATTTTTTATGGAGACATCTGCTCTTGAAGCCACCAATGTCGAAACCGCCTTCTTGATGATTTTAATGGAGATATACCGGATAATGAGCAAGAAGACCCTCGCTTCCAATGATCAAGATGGTGGAGATTCAGGGCTTCTAAAGGGAACTGCGATTATCGTTCCTAGTCCAGAGTCGGATGCCTCCAGGAAGGGGGGCTGCTGCTTTTCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0019899 GO:0019900 GO:0022414 GO:0022603 GO:0022604 GO:0030133 GO:0030154 GO:0030427 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0040008 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0070382 GO:0071840 GO:0080092 GO:0090404 GO:0090406 GO:0097708 GO:0099503 GO:0120025 GO:0120038 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

223

Amino Acids

24.71

Weight (kDa)

5.97

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12160
fragaria_vesca	FvH4_6g22850
malus_domestica	MD12G1062500.v1.1 MD14G1063200.v1.1
prunus_persica	Prupe.7G071600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480591
rosa_laevigata	RLG00000023465
rosa_multiflora	Rmu_sc0002205.1_g000059
rosa_roxburghii	Rroxscaffold_6G00401260
rosa_rugosa	Rorug03G0184300
rosa_samantha	Rh3AG236400 Rh3CG265900 Rh3DG261700
rosa_wichuraiana	Rw3G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	74, 98, 100
AciI	CCGC	3 cut(s)	72, 74, 501
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	7, 152
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	2 cut(s)	14, 230
AfiI	CCNNNNNNNGG	2 cut(s)	144, 645
AgsI	TTSAA	2 cut(s)	49, 482
AjnI	CCWGG	1 cut(s)	638
AluBI	AGCT	2 cut(s)	91, 236
AluI	AGCT	2 cut(s)	91, 236
Alw26I	GTCTC	3 cut(s)	60, 407, 461
AoxI	GGCC	2 cut(s)	217, 343
ApeKI	GCWGC	3 cut(s)	91, 651, 654
ApoI	RAATTY	2 cut(s)	7, 152
AspLEI	GCGC	5 cut(s)	100, 102, 199, 263, 300
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	219
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	3 cut(s)	78, 638, 641
BccI	CCATC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	640
BclI	TGATCA	2 cut(s)	310, 565
BcoDI	GTCTC	3 cut(s)	60, 407, 461
BfaI	CTAG	3 cut(s)	108, 321, 618
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	3 cut(s)	92, 652, 655
BlsI	GCNGC	3 cut(s)	93, 653, 656
Bme1390I	CCNGG	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	415, 622
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	622
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	72, 256
BsaWI	WCCGGW	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 645
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	640
BseDI	CCNNGG	2 cut(s)	72, 256
BseGI	GGATG	1 cut(s)	637
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	144, 645
BseMI	GCAATG	1 cut(s)	279
BsePI	GCGCGC	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	78, 638, 641
Bsh1236I	CGCG	3 cut(s)	74, 98, 100
BshFI	GGCC	2 cut(s)	219, 345
BsiSI	CCGG	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	144, 645
BsmAI	GTCTC	3 cut(s)	60, 407, 461
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	219, 345
Bsp143I	GATC	3 cut(s)	178, 310, 565
BspACI	CCGC	3 cut(s)	72, 74, 501
BspANI	GGCC	2 cut(s)	219, 345
BspFNI	CGCG	3 cut(s)	74, 98, 100
BspLI	GGNNCC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	72, 256
BssHII	GCGCGC	1 cut(s)	98
BssMI	GATC	3 cut(s)	178, 310, 565
BssSI	CACGAG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	640
Bst4CI	ACNGT	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstC8I	GCNNGC	3 cut(s)	96, 100, 217
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	637
BstFNI	CGCG	3 cut(s)	74, 98, 100
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	5 cut(s)	100, 102, 199, 263, 300
BstKTI	GATC	3 cut(s)	181, 313, 568
BstMAI	GTCTC	3 cut(s)	60, 407, 461
BstMBI	GATC	3 cut(s)	178, 310, 565
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 104, 269, 387, 482
BstNI	CCWGG	1 cut(s)	640
BstSCI	CCNGG	1 cut(s)	638
BstUI	CGCG	3 cut(s)	74, 98, 100
BstV1I	GCAGC	3 cut(s)	78, 638, 641
BstV2I	GAAGAC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	219, 345
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	2 cut(s)	210, 417
BtsIMutI	CAGTG	3 cut(s)	127, 210, 417
Cac8I	GCNNGC	3 cut(s)	96, 100, 217
CfoI	GCGC	5 cut(s)	100, 102, 199, 263, 300
Cfr13I	GGNCC	1 cut(s)	343
Cfr42I	CCGCGG	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	13, 229
CviAII	CATG	3 cut(s)	289, 316, 347
CviJI	RGCY	9 cut(s)	91, 137, 219, 236, 320, 345, 485, 589, 651
CviKI_1	RGCY	9 cut(s)	91, 137, 219, 236, 320, 345, 485, 589, 651
CviQI	GTAC	2 cut(s)	13, 229
DpnI	GATC	3 cut(s)	180, 312, 567
DpnII	GATC	3 cut(s)	178, 310, 565
EaeI	YGGCCR	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	638
FaeI	CATG	3 cut(s)	292, 319, 350
FaiI	YATR	8 cut(s)	42, 285, 290, 317, 348, 371, 464, 529
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	288, 315, 346
FbaI	TGATCA	2 cut(s)	310, 565
Fnu4HI	GCNGC	3 cut(s)	92, 652, 655
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	3 cut(s)	92, 652, 655
FspBI	CTAG	3 cut(s)	108, 321, 618
GlaI	GCGC	5 cut(s)	99, 101, 198, 262, 299
GluI	GCNGC	3 cut(s)	92, 652, 655
GsuI	CTGGAG	1 cut(s)	622
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	219, 345
HapII	CCGG	1 cut(s)	532
HhaI	GCGC	5 cut(s)	100, 102, 199, 263, 300
Hin1II	CATG	3 cut(s)	292, 319, 350
Hin6I	GCGC	5 cut(s)	98, 100, 197, 261, 298
HinP1I	GCGC	5 cut(s)	98, 100, 197, 261, 298
HinfI	GANTC	4 cut(s)	68, 128, 581, 626
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	5 cut(s)	30, 159, 269, 407, 631
Hpy188III	TCNNGA	6 cut(s)	176, 241, 479, 508, 569, 623
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	3 cut(s)	187, 514, 637
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 104, 269, 387, 482
Hsp92II	CATG	3 cut(s)	292, 319, 350
HspAI	GCGC	5 cut(s)	98, 100, 197, 261, 298
Ksp22I	TGATCA	2 cut(s)	310, 565
KspI	CCGCGG	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	178, 310, 565
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	8 cut(s)	201, 263, 416, 545, 570, 625, 636, 652
Lsp1109I	GCAGC	3 cut(s)	78, 638, 641
LweI	GCATC	2 cut(s)	415, 622
MaeI	CTAG	3 cut(s)	108, 321, 618
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	180, 312, 567
MboI	GATC	3 cut(s)	178, 310, 565
MboII	GAAGA	2 cut(s)	434, 559
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	4 cut(s)	7, 33, 152, 335
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	62, 122, 635
MmeI	TCCRAC	4 cut(s)	58, 247, 309, 609
MnlI	CCTC	4 cut(s)	251, 325, 563, 646
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	2 cut(s)	338, 518
Msp20I	TGGCCA	1 cut(s)	219
MspA1I	CMGCKG	2 cut(s)	74, 91
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	640
MvnI	CGCG	3 cut(s)	74, 98, 100
MwoI	GCNNNNNNNGC	5 cut(s)	97, 104, 269, 387, 482
NdeII	GATC	3 cut(s)	178, 310, 565
NlaIII	CATG	3 cut(s)	292, 319, 350
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	238
PauI	GCGCGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	93, 653, 656
PleI	GAGTC	3 cut(s)	62, 122, 634
PpsI	GAGTC	3 cut(s)	62, 122, 634
Psp6I	CCWGG	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	638
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	343
PteI	GCGCGC	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	14, 230
RsaNI	GTAC	2 cut(s)	13, 229
SacII	CCGCGG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	338, 518
SatI	GCNGC	3 cut(s)	92, 652, 655
Sau3AI	GATC	3 cut(s)	178, 310, 565
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	3 cut(s)	62, 122, 635
ScrFI	CCNGG	1 cut(s)	640
SetI	ASST	5 cut(s)	93, 230, 238, 326, 456
SfaNI	GCATC	2 cut(s)	415, 622
Sfr303I	CCGCGG	1 cut(s)	75
SgrBI	CCGCGG	1 cut(s)	75
Sse9I	AATT	4 cut(s)	7, 33, 152, 335
SsiI	CCGC	3 cut(s)	72, 74, 501
SspMI	CTAG	3 cut(s)	108, 321, 618
StyD4I	CCNGG	1 cut(s)	638
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	5 cut(s)	5, 131, 150, 177, 495
TasI	AATT	4 cut(s)	7, 33, 152, 335
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	338, 518
Tru9I	TTAA	2 cut(s)	338, 518
TscAI	CASTG	3 cut(s)	127, 217, 417
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	3 cut(s)	91, 651, 654
Tsp45I	GTSAC	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	3 cut(s)	127, 217, 417
XapI	RAATTY	2 cut(s)	7, 152
XspI	CTAG	3 cut(s)	108, 321, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.